Wall clock time and date at job start Mon Mar 30 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 120.00247 * 2 1 4 4 N 1.34783 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.47423 * 125.64789 * 5.10820 * 4 2 1 6 6 C 1.54905 * 104.82892 * 204.09455 * 5 4 2 7 7 C 1.55156 * 101.58578 * 322.98882 * 6 5 4 8 8 C 1.47026 * 125.64583 * 185.06690 * 4 2 1 9 9 H 1.09002 * 109.87760 * 59.40822 * 8 4 2 10 10 C 1.52992 * 109.88307 * 298.39142 * 8 4 2 11 11 H 1.09008 * 109.47184 * 61.58692 * 10 8 4 12 12 C 1.53002 * 109.47017 * 181.57817 * 10 8 4 13 13 C 1.52997 * 109.47359 * 301.58097 * 10 8 4 14 14 C 1.50705 * 109.47073 * 174.42219 * 13 10 8 15 15 H 1.07995 * 120.00140 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99916 * 179.97438 * 14 13 10 17 17 N 1.31518 * 119.99725 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46969 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46659 * 120.00162 * 18 16 14 21 21 H 1.48496 * 109.47228 * 240.00286 * 18 16 14 22 22 H 1.09000 * 109.46870 * 239.99979 * 1 2 3 23 23 H 1.09005 * 109.46896 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46901 * 119.99579 * 1 2 3 25 25 H 1.09000 * 110.36588 * 322.93439 * 5 4 2 26 26 H 1.08998 * 110.36585 * 85.25818 * 5 4 2 27 27 H 1.09004 * 111.00742 * 81.06419 * 6 5 4 28 28 H 1.09000 * 111.00624 * 204.91570 * 6 5 4 29 29 H 1.08991 * 110.72166 * 277.14340 * 7 6 5 30 30 H 1.09002 * 110.72440 * 153.86331 * 7 6 5 31 31 H 1.09002 * 109.47038 * 60.00716 * 12 10 8 32 32 H 1.09001 * 109.46917 * 180.02562 * 12 10 8 33 33 H 1.08995 * 109.47751 * 300.00325 * 12 10 8 34 34 H 1.08995 * 109.47123 * 294.42630 * 13 10 8 35 35 H 1.08998 * 109.47173 * 54.42797 * 13 10 8 36 36 H 0.97003 * 119.99433 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5771 -2.5079 -0.1078 6 6 2.6102 -3.4612 0.5429 7 6 3.9505 -2.8259 0.0876 8 6 3.6400 -1.3143 0.1049 9 1 3.9906 -0.8722 1.0375 10 6 4.3191 -0.6299 -1.0829 11 1 4.0867 0.4350 -1.0703 12 6 5.8338 -0.8224 -0.9846 13 6 3.8101 -1.2477 -2.3868 14 6 4.3734 -0.4844 -3.5578 15 1 5.0292 0.3569 -3.3889 16 6 4.0523 -0.8607 -4.8448 17 7 3.2540 -1.8855 -5.0504 18 14 4.7511 0.0849 -6.2963 19 1 5.6156 1.1857 -5.8000 20 1 5.5553 -0.8320 -7.1434 21 1 3.6383 0.6526 -7.0992 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 0.6330 -2.5433 0.4359 26 1 1.4234 -2.7721 -1.1540 27 1 2.5219 -3.4503 1.6293 28 1 2.5061 -4.4742 0.1543 29 1 4.2108 -3.1545 -0.9185 30 1 4.7486 -3.0637 0.7908 31 1 6.0663 -1.8872 -0.9973 32 1 6.3177 -0.3344 -1.8307 33 1 6.1965 -0.3823 -0.0558 34 1 4.1285 -2.2885 -2.4444 35 1 2.7214 -1.1989 -2.4112 36 1 3.0278 -2.1500 -5.9559 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260491465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:19 Heat of formation + Delta-G solvation = -53.058007 kcal Electronic energy + Delta-G solvation = -16521.835429 eV Core-core repulsion = 14005.276933 eV Total energy + Delta-G solvation = -2516.558496 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85039 -37.20338 -34.37071 -32.19833 -31.34459 -29.19847 -27.73876 -26.55539 -23.79485 -22.66124 -21.43080 -19.46997 -17.82425 -16.61988 -16.33837 -15.71699 -14.74549 -14.39340 -14.23547 -13.68300 -13.18325 -12.72355 -12.64571 -12.46223 -12.14768 -11.97986 -11.67350 -11.39868 -11.36795 -10.92199 -10.88362 -10.83360 -10.63312 -10.27909 -10.05268 -9.71611 -9.17907 -9.07887 -8.86375 -8.25951 -8.01289 -5.93727 -3.92637 3.13337 3.34627 3.42098 3.47606 3.51043 4.52319 4.83535 4.86059 5.17894 5.29437 5.42492 5.49215 5.59233 5.64783 5.70036 5.81123 5.95029 6.04858 6.10157 6.18474 6.23104 6.25610 6.33333 6.55087 6.70253 6.83361 7.09026 7.21426 7.32736 7.78164 7.95977 8.05952 8.08276 8.54734 8.68903 9.13406 9.69956 11.17762 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026053 B = 0.009089 C = 0.008456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.468159 B = 3079.894428 C = 3310.366066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.525 3.475 3 O -0.545 6.545 4 N -0.606 5.606 5 C 0.100 3.900 6 C -0.132 4.132 7 C -0.132 4.132 8 C 0.144 3.856 9 H 0.059 0.941 10 C -0.103 4.103 11 H 0.072 0.928 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.508 4.508 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 -4.033 11.395 12.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.315 3.685 3 O -0.423 6.423 4 N -0.340 5.340 5 C -0.023 4.023 6 C -0.170 4.170 7 C -0.170 4.170 8 C 0.041 3.959 9 H 0.077 0.923 10 C -0.122 4.122 11 H 0.091 0.909 12 C -0.188 4.188 13 C 0.000 4.000 14 C -0.546 4.546 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 H 0.099 0.901 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.647 -3.481 11.263 12.340 hybrid contribution 0.249 0.374 -0.999 1.096 sum -3.399 -3.107 10.264 11.250 Atomic orbital electron populations 1.21879 0.92386 1.04828 1.03691 1.20273 0.89963 0.82321 0.75987 1.90687 1.70687 1.30749 1.50135 1.48445 1.07665 1.05572 1.72364 1.22325 0.96238 0.82301 1.01418 1.22728 0.95481 0.98772 1.00039 1.22834 0.96660 0.94037 1.03468 1.21687 0.79818 0.95642 0.98790 0.92326 1.21570 0.94120 1.00919 0.95571 0.90915 1.21688 0.96382 1.00685 1.00034 1.19078 0.96115 0.95269 0.89519 1.21342 1.28186 1.14114 0.90998 0.92772 1.24983 0.95406 0.95234 0.98871 1.69968 1.36342 1.26907 1.20699 0.86614 0.78918 0.80062 0.82912 1.19784 1.21157 1.21160 0.90121 0.89431 0.89518 0.91332 0.90551 0.91386 0.90172 0.88757 0.91005 0.93544 0.91885 0.95094 0.96678 0.96701 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.25 36.01 0.33 -1.91 16 2 C 0.53 9.81 7.78 -10.98 -0.09 9.72 16 3 O -0.54 -12.50 15.96 5.56 0.09 -12.41 16 4 N -0.61 -10.63 2.16 -163.02 -0.35 -10.99 16 5 C 0.10 1.41 6.70 -2.53 -0.02 1.39 16 6 C -0.13 -1.63 7.08 -24.58 -0.17 -1.80 16 7 C -0.13 -2.00 5.20 -24.90 -0.13 -2.13 16 8 C 0.14 2.61 2.71 -66.95 -0.18 2.42 16 9 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 10 C -0.10 -2.26 2.05 -90.62 -0.19 -2.44 16 11 H 0.07 1.83 6.73 -51.92 -0.35 1.48 16 12 C -0.13 -2.56 8.78 37.16 0.33 -2.23 16 13 C 0.04 0.96 3.98 -27.88 -0.11 0.84 16 14 C -0.51 -14.70 8.41 -34.44 -0.29 -14.99 16 15 H 0.05 1.57 7.09 -52.49 -0.37 1.20 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 18 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H 0.08 0.83 7.96 -51.93 -0.41 0.41 16 23 H 0.09 1.12 8.12 -51.93 -0.42 0.70 16 24 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 26 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.65 5.55 -51.93 -0.29 1.36 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.84 7.09 -51.93 -0.37 0.48 16 32 H 0.06 1.34 6.99 -51.93 -0.36 0.97 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.40 6.27 -51.93 -0.33 0.08 16 35 H 0.01 0.41 7.35 -51.93 -0.38 0.03 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 285.59 15.07 4.30 4.30 Total: -1.00 -33.37 285.59 -6.62 -39.99 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.76 Total: -2.28 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.61 Total: -9.61 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.38 Total: -37.29 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.37 -6.62 -39.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260491465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.066 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds