Wall clock time and date at job start Mon Mar 30 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 120.00247 * 2 1 4 4 N 1.34783 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.47423 * 125.64789 * 5.10820 * 4 2 1 6 6 C 1.54905 * 104.82892 * 204.09455 * 5 4 2 7 7 C 1.55156 * 101.58578 * 322.98882 * 6 5 4 8 8 C 1.47026 * 125.64583 * 185.06690 * 4 2 1 9 9 H 1.09002 * 109.87760 * 59.40822 * 8 4 2 10 10 C 1.52992 * 109.88307 * 298.39142 * 8 4 2 11 11 H 1.09008 * 109.47184 * 61.58692 * 10 8 4 12 12 C 1.53002 * 109.47017 * 181.57817 * 10 8 4 13 13 C 1.52997 * 109.47359 * 301.58097 * 10 8 4 14 14 C 1.50705 * 109.47073 * 174.42219 * 13 10 8 15 15 H 1.07995 * 120.00140 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99916 * 179.97438 * 14 13 10 17 17 N 1.31518 * 119.99725 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46969 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46659 * 120.00162 * 18 16 14 21 21 H 1.48496 * 109.47228 * 240.00286 * 18 16 14 22 22 H 1.09000 * 109.46870 * 239.99979 * 1 2 3 23 23 H 1.09005 * 109.46896 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46901 * 119.99579 * 1 2 3 25 25 H 1.09000 * 110.36588 * 322.93439 * 5 4 2 26 26 H 1.08998 * 110.36585 * 85.25818 * 5 4 2 27 27 H 1.09004 * 111.00742 * 81.06419 * 6 5 4 28 28 H 1.09000 * 111.00624 * 204.91570 * 6 5 4 29 29 H 1.08991 * 110.72166 * 277.14340 * 7 6 5 30 30 H 1.09002 * 110.72440 * 153.86331 * 7 6 5 31 31 H 1.09002 * 109.47038 * 60.00716 * 12 10 8 32 32 H 1.09001 * 109.46917 * 180.02562 * 12 10 8 33 33 H 1.08995 * 109.47751 * 300.00325 * 12 10 8 34 34 H 1.08995 * 109.47123 * 294.42630 * 13 10 8 35 35 H 1.08998 * 109.47173 * 54.42797 * 13 10 8 36 36 H 0.97003 * 119.99433 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5771 -2.5079 -0.1078 6 6 2.6102 -3.4612 0.5429 7 6 3.9505 -2.8259 0.0876 8 6 3.6400 -1.3143 0.1049 9 1 3.9906 -0.8722 1.0375 10 6 4.3191 -0.6299 -1.0829 11 1 4.0867 0.4350 -1.0703 12 6 5.8338 -0.8224 -0.9846 13 6 3.8101 -1.2477 -2.3868 14 6 4.3734 -0.4844 -3.5578 15 1 5.0292 0.3569 -3.3889 16 6 4.0523 -0.8607 -4.8448 17 7 3.2540 -1.8855 -5.0504 18 14 4.7511 0.0849 -6.2963 19 1 5.6156 1.1857 -5.8000 20 1 5.5553 -0.8320 -7.1434 21 1 3.6383 0.6526 -7.0992 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 0.6330 -2.5433 0.4359 26 1 1.4234 -2.7721 -1.1540 27 1 2.5219 -3.4503 1.6293 28 1 2.5061 -4.4742 0.1543 29 1 4.2108 -3.1545 -0.9185 30 1 4.7486 -3.0637 0.7908 31 1 6.0663 -1.8872 -0.9973 32 1 6.3177 -0.3344 -1.8307 33 1 6.1965 -0.3823 -0.0558 34 1 4.1285 -2.2885 -2.4444 35 1 2.7214 -1.1989 -2.4112 36 1 3.0278 -2.1500 -5.9559 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260491465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:19 Heat of formation + Delta-G solvation = -74.127619 kcal Electronic energy + Delta-G solvation = -16522.749076 eV Core-core repulsion = 14005.276933 eV Total energy + Delta-G solvation = -2517.472143 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25356 -38.69328 -36.13800 -34.23775 -32.68177 -30.42661 -29.45246 -28.18786 -25.61000 -24.26166 -22.74073 -20.93101 -19.38079 -18.62370 -17.82208 -17.13819 -16.53045 -16.09063 -15.78469 -15.14099 -14.55077 -14.34506 -14.18783 -13.85321 -13.73723 -13.27950 -13.12063 -12.96587 -12.82262 -12.81751 -12.65001 -12.30635 -12.13954 -11.96199 -11.54707 -11.49915 -11.06160 -10.87821 -10.70883 -10.47067 -9.47229 -8.19458 -6.26305 1.33597 1.34773 1.47445 1.71792 2.22857 2.39126 3.13059 3.61586 3.75168 4.05034 4.08479 4.28961 4.38522 4.45029 4.50750 4.61585 4.63593 4.68217 4.75538 4.92643 5.01969 5.03139 5.11344 5.16600 5.24811 5.32906 5.42341 5.47108 5.54689 5.60085 5.86499 5.95834 6.33207 6.71756 6.87884 7.27889 7.40214 8.91735 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026053 B = 0.009089 C = 0.008456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.468159 B = 3079.894428 C = 3310.366066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.507 3.493 3 O -0.602 6.602 4 N -0.611 5.611 5 C 0.094 3.906 6 C -0.118 4.118 7 C -0.129 4.129 8 C 0.139 3.861 9 H 0.065 0.935 10 C -0.097 4.097 11 H 0.031 0.969 12 C -0.123 4.123 13 C 0.055 3.945 14 C -0.534 4.534 15 H 0.043 0.957 16 C 0.005 3.995 17 N -0.926 5.926 18 Si 0.952 3.048 19 H -0.271 1.271 20 H -0.272 1.272 21 H -0.279 1.279 22 H 0.121 0.879 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.005 0.995 35 H -0.015 1.015 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 -5.281 12.483 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.298 3.702 3 O -0.484 6.484 4 N -0.343 5.343 5 C -0.028 4.028 6 C -0.156 4.156 7 C -0.166 4.166 8 C 0.036 3.964 9 H 0.083 0.917 10 C -0.117 4.117 11 H 0.050 0.950 12 C -0.181 4.181 13 C 0.018 3.982 14 C -0.572 4.572 15 H 0.062 0.938 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.777 3.223 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.205 1.205 22 H 0.139 0.861 23 H 0.107 0.893 24 H 0.112 0.888 25 H 0.127 0.873 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.023 0.977 35 H 0.004 0.996 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.038 -4.770 12.355 13.846 hybrid contribution 0.361 0.759 -1.350 1.590 sum -3.677 -4.011 11.005 12.277 Atomic orbital electron populations 1.21879 0.88180 1.05773 1.05825 1.21347 0.92173 0.81804 0.74853 1.90652 1.72233 1.32747 1.52789 1.48674 1.07642 1.06806 1.71212 1.22556 0.98642 0.80786 1.00836 1.22759 0.92401 0.98829 1.01622 1.22776 0.99435 0.91659 1.02762 1.21688 0.80411 0.97511 0.96807 0.91669 1.21400 0.96150 0.98470 0.95659 0.95008 1.21603 0.94444 1.01668 1.00391 1.18829 0.93987 0.94510 0.90852 1.21694 1.28535 1.14339 0.92661 0.93837 1.25790 0.95665 0.96159 1.01615 1.70065 1.37063 1.27978 1.21616 0.85596 0.78401 0.78869 0.79407 1.19595 1.19761 1.20520 0.86113 0.89256 0.88850 0.87271 0.93176 0.88506 0.88277 0.91643 0.88179 0.91975 0.94260 0.92388 0.97683 0.99632 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.25 71.24 0.66 -3.28 16 2 C 0.51 19.02 7.78 87.66 0.68 19.70 16 3 O -0.60 -28.74 15.96 -3.02 -0.05 -28.79 16 4 N -0.61 -21.11 2.16 -788.06 -1.71 -22.81 16 5 C 0.09 2.43 6.70 86.85 0.58 3.02 16 6 C -0.12 -2.51 7.08 31.98 0.23 -2.28 16 7 C -0.13 -3.65 5.20 31.78 0.17 -3.48 16 8 C 0.14 5.00 2.71 45.34 0.12 5.13 16 9 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 10 C -0.10 -4.42 2.05 -10.80 -0.02 -4.45 16 11 H 0.03 1.69 6.73 -2.38 -0.02 1.67 16 12 C -0.12 -4.88 8.78 71.98 0.63 -4.25 16 13 C 0.06 2.96 3.98 29.85 0.12 3.08 16 14 C -0.53 -32.00 8.41 25.60 0.22 -31.79 16 15 H 0.04 2.63 7.09 -2.91 -0.02 2.61 16 16 C 0.01 0.32 5.46 84.66 0.46 0.78 16 17 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 18 Si 0.95 46.36 29.54 68.60 2.03 48.39 16 19 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 22 H 0.12 2.03 7.96 -2.39 -0.02 2.01 16 23 H 0.09 2.20 8.12 -2.38 -0.02 2.18 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.11 1.95 7.48 -2.39 -0.02 1.93 16 26 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.26 5.55 -2.39 -0.01 2.24 16 30 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 2.23 7.09 -2.39 -0.02 2.22 16 32 H 0.04 1.70 6.99 -2.39 -0.02 1.69 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.01 0.28 6.27 -2.39 -0.01 0.26 16 35 H -0.01 -0.86 7.35 -2.39 -0.02 -0.88 16 36 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -75.96 285.59 5.44 -70.52 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.04 Total: 6.81 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 3.84 Total: -17.83 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -1.42 Total: -79.10 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.79 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -75.96 5.44 -70.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260491465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.610 kcal (2) G-P(sol) polarization free energy of solvation -75.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds