Wall clock time and date at job start Mon Mar 30 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46858 * 2 1 4 4 C 1.52999 * 109.47304 * 240.00298 * 2 1 3 5 5 C 1.50698 * 109.47464 * 64.99678 * 4 2 1 6 6 H 1.07998 * 119.99623 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00289 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00172 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99901 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46774 * 90.00198 * 9 7 5 11 11 H 1.48497 * 109.47120 * 209.99991 * 9 7 5 12 12 H 1.48500 * 109.46967 * 330.00296 * 9 7 5 13 13 C 1.52994 * 109.47481 * 119.99471 * 2 1 3 14 14 H 1.08998 * 109.40550 * 304.99210 * 13 2 1 15 15 C 1.53075 * 109.39771 * 64.81580 * 13 2 1 16 16 C 1.53345 * 108.42582 * 169.02970 * 15 13 2 17 17 C 1.52916 * 108.67312 * 292.46667 * 16 15 13 18 18 N 1.45756 * 110.32338 * 50.86007 * 17 16 15 19 19 C 1.46497 * 117.95002 * 160.82253 * 18 17 16 20 20 C 1.33095 * 124.30514 * 340.59433 * 18 17 16 21 21 O 1.21279 * 118.32807 * 182.40394 * 20 18 17 22 22 H 1.08997 * 109.46977 * 182.46100 * 1 2 3 23 23 H 1.09003 * 109.47594 * 302.45842 * 1 2 3 24 24 H 1.08998 * 109.47494 * 62.45889 * 1 2 3 25 25 H 1.08994 * 109.47242 * 184.99814 * 4 2 1 26 26 H 1.08999 * 109.46807 * 304.99517 * 4 2 1 27 27 H 0.97004 * 120.00111 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.67420 * 49.29125 * 15 13 2 29 29 H 1.09002 * 109.70378 * 288.78020 * 15 13 2 30 30 H 1.09007 * 109.60403 * 172.71175 * 16 15 13 31 31 H 1.09000 * 109.73953 * 52.30631 * 16 15 13 32 32 H 1.09006 * 109.30106 * 171.06413 * 17 16 15 33 33 H 1.08999 * 109.30312 * 290.64464 * 17 16 15 34 34 H 1.09005 * 109.47322 * 89.99579 * 19 18 17 35 35 H 1.08997 * 109.47328 * 209.99552 * 19 18 17 36 36 H 1.08999 * 109.47074 * 329.99721 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 1.6440 0.2768 -4.7994 9 14 2.9629 -1.9888 -3.9028 10 1 2.0237 -3.1331 -4.0189 11 1 3.8109 -1.9190 -5.1198 12 1 3.8253 -2.1754 -2.7084 13 6 2.0400 -0.7211 1.2492 14 1 1.6050 -0.2606 2.1362 15 6 1.6303 -2.1947 1.1886 16 6 2.3762 -2.9511 2.2944 17 6 3.8675 -2.9671 1.9565 18 7 4.3329 -1.6189 1.6562 19 6 5.7723 -1.3569 1.7304 20 6 3.5362 -0.6091 1.3141 21 8 4.0441 0.4586 1.0439 22 1 -0.3633 -1.0267 0.0441 23 1 -0.3634 0.5515 0.8671 24 1 -0.3634 0.4752 -0.9112 25 1 3.1263 -0.7994 -1.2056 26 1 1.6054 -1.7197 -1.2951 27 1 1.8913 -0.0461 -5.6800 28 1 1.8961 -2.6098 0.2164 29 1 0.5551 -2.2839 1.3439 30 1 2.0036 -3.9739 2.3533 31 1 2.2231 -2.4506 3.2505 32 1 4.4254 -3.3596 2.8068 33 1 4.0338 -3.6071 1.0901 34 1 6.2268 -1.5464 0.7579 35 1 5.9384 -0.3173 2.0126 36 1 6.2229 -2.0122 2.4758 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260552551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:21 Heat of formation + Delta-G solvation = -75.600512 kcal Electronic energy + Delta-G solvation = -16564.093026 eV Core-core repulsion = 14046.557013 eV Total energy + Delta-G solvation = -2517.536012 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.73279 -37.87391 -37.28495 -34.82962 -33.30439 -30.35137 -29.12951 -27.96656 -25.95877 -24.45752 -23.16776 -20.90898 -19.26969 -18.96302 -17.51838 -17.45068 -16.59016 -16.46964 -15.38900 -15.11233 -15.06519 -14.89170 -14.44304 -14.29844 -13.68656 -13.52438 -13.19802 -13.05003 -12.82053 -12.75081 -12.65894 -12.08676 -12.03028 -11.84239 -11.63270 -11.49270 -11.12476 -10.97592 -10.74174 -10.52569 -9.69914 -8.29760 -6.31351 1.26871 1.31716 1.42647 1.68820 2.14180 2.33046 3.04753 3.64078 3.81862 3.86959 3.94048 4.29284 4.36150 4.42176 4.53207 4.54899 4.60941 4.67351 4.73707 4.86749 4.89965 4.98318 5.02658 5.13507 5.15458 5.25647 5.36965 5.43301 5.53130 5.53817 5.70234 5.71463 6.30806 6.49953 6.74995 7.24118 7.31197 8.87438 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.010010 C = 0.009073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.691213 B = 2796.538373 C = 3085.267430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 H 0.035 0.965 4 C 0.007 3.993 5 C -0.520 4.520 6 H 0.032 0.968 7 C 0.001 3.999 8 N -0.952 5.952 9 Si 0.947 3.053 10 H -0.253 1.253 11 H -0.285 1.285 12 H -0.261 1.261 13 C -0.091 4.091 14 H 0.115 0.885 15 C -0.126 4.126 16 C -0.127 4.127 17 C 0.103 3.897 18 N -0.612 5.612 19 C 0.075 3.925 20 C 0.510 3.490 21 O -0.601 6.601 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.035 0.965 25 H -0.010 1.010 26 H 0.031 0.969 27 H 0.265 0.735 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 -12.522 18.171 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.084 4.084 3 H 0.054 0.946 4 C -0.031 4.031 5 C -0.558 4.558 6 H 0.050 0.950 7 C -0.195 4.195 8 N -0.594 5.594 9 Si 0.770 3.230 10 H -0.177 1.177 11 H -0.211 1.211 12 H -0.185 1.185 13 C -0.112 4.112 14 H 0.133 0.867 15 C -0.163 4.163 16 C -0.164 4.164 17 C -0.018 4.018 18 N -0.344 5.344 19 C -0.068 4.068 20 C 0.300 3.700 21 O -0.483 6.483 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.008 0.992 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.086 -12.012 17.865 21.748 hybrid contribution 0.601 0.208 -1.032 1.212 sum 3.687 -11.804 16.834 20.887 Atomic orbital electron populations 1.21674 0.93372 1.02408 1.00926 1.20815 0.96907 0.97846 0.92795 0.94623 1.19517 0.94313 0.96002 0.93224 1.21477 1.34293 1.08642 0.91396 0.94950 1.25993 0.96864 1.01122 0.95492 1.70073 1.49045 1.41591 0.98656 0.85708 0.79453 0.80099 0.77712 1.17696 1.21097 1.18536 1.21318 0.89827 0.99747 1.00296 0.86680 1.21900 1.02599 0.91785 1.00013 1.21916 0.92689 1.03249 0.98559 1.21796 0.97049 0.80821 1.02118 1.47377 1.07997 1.11416 1.67563 1.21775 0.80087 1.02814 1.02127 1.20592 0.91027 0.83238 0.75182 1.90656 1.76736 1.29930 1.50954 0.91061 0.91516 0.94629 0.99185 0.95073 0.92630 0.92304 0.88326 0.86701 0.89833 0.87204 0.91820 0.93939 0.92455 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.86 71.98 0.64 -3.96 16 2 C -0.06 -2.73 1.92 -10.80 -0.02 -2.75 16 3 H 0.04 1.76 7.63 -2.39 -0.02 1.75 16 4 C 0.01 0.33 2.78 29.85 0.08 0.41 16 5 C -0.52 -31.79 8.93 25.60 0.23 -31.56 16 6 H 0.03 2.18 7.31 -2.91 -0.02 2.15 16 7 C 0.00 0.08 5.47 84.65 0.46 0.54 16 8 N -0.95 -62.37 13.96 21.44 0.30 -62.07 16 9 Si 0.95 46.63 27.47 68.60 1.88 48.51 16 10 H -0.25 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 13 C -0.09 -2.94 2.20 -11.68 -0.03 -2.97 16 14 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 15 C -0.13 -3.05 4.58 30.73 0.14 -2.91 16 16 C -0.13 -1.99 6.02 30.68 0.18 -1.81 16 17 C 0.10 1.87 6.40 86.49 0.55 2.42 16 18 N -0.61 -17.28 3.20 -852.00 -2.73 -20.01 16 19 C 0.07 1.86 10.21 127.77 1.30 3.17 16 20 C 0.51 18.89 5.94 87.75 0.52 19.42 16 21 O -0.60 -28.38 15.30 -3.03 -0.05 -28.43 16 22 H 0.07 2.21 6.71 -2.39 -0.02 2.20 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.03 1.52 6.88 -2.39 -0.02 1.50 16 25 H -0.01 -0.55 6.29 -2.39 -0.02 -0.57 16 26 H 0.03 1.44 5.84 -2.39 -0.01 1.43 16 27 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 28 H 0.06 1.72 5.88 -2.39 -0.01 1.70 16 29 H 0.10 1.98 7.09 -2.39 -0.02 1.96 16 30 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 32 H 0.11 1.19 7.92 -2.38 -0.02 1.18 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.06 1.67 7.19 -2.39 -0.02 1.65 16 36 H 0.11 1.68 7.86 -2.39 -0.02 1.66 16 Total: -1.00 -80.46 277.73 4.47 -75.99 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.99 Total: 5.98 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 4.07 Total: -19.99 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -2.43 Total: -82.07 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.88 Total: 48.51 kcal Total: -80.46 4.47 -75.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.392 kcal (2) G-P(sol) polarization free energy of solvation -80.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds