Wall clock time and date at job start Mon Mar 30 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 N 1.46505 * 109.47010 * 120.00033 * 2 1 3 5 5 C 1.46764 * 124.34624 * 120.00501 * 4 2 1 6 6 C 1.54477 * 105.47358 * 162.96359 * 5 4 2 7 7 H 1.09006 * 110.96616 * 267.29578 * 6 5 4 8 8 C 1.52998 * 110.97362 * 143.56676 * 6 5 4 9 9 H 1.08997 * 109.47127 * 303.08978 * 8 6 5 10 10 C 1.53000 * 109.47311 * 183.08606 * 8 6 5 11 11 C 1.50704 * 109.47022 * 63.08723 * 8 6 5 12 12 H 1.08005 * 120.00060 * 35.00690 * 11 8 6 13 13 C 1.37879 * 119.99960 * 215.00454 * 11 8 6 14 14 N 1.31516 * 119.99766 * 184.90460 * 13 11 8 15 15 Si 1.86799 * 119.99998 * 4.90616 * 13 11 8 16 16 H 1.48499 * 109.46925 * 84.81008 * 15 13 11 17 17 H 1.48502 * 109.47061 * 204.80966 * 15 13 11 18 18 H 1.48497 * 109.47169 * 324.81156 * 15 13 11 19 19 C 1.54628 * 101.76706 * 25.40845 * 6 5 4 20 20 C 1.34418 * 124.35009 * 299.97554 * 4 2 1 21 21 O 1.21281 * 124.94273 * 0.46608 * 20 4 2 22 22 H 1.09001 * 109.47004 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47018 * 299.99652 * 1 2 3 24 24 H 1.08998 * 109.47124 * 59.99863 * 1 2 3 25 25 H 1.09004 * 109.47127 * 240.00016 * 2 1 3 26 26 H 1.09000 * 109.47060 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47152 * 300.00119 * 3 2 1 28 28 H 1.09004 * 109.47025 * 59.99954 * 3 2 1 29 29 H 1.08992 * 110.25104 * 43.95663 * 5 4 2 30 30 H 1.09007 * 110.24451 * 281.96000 * 5 4 2 31 31 H 1.08996 * 109.47037 * 295.11999 * 10 8 6 32 32 H 1.08996 * 109.46952 * 55.11712 * 10 8 6 33 33 H 1.09001 * 109.46994 * 175.11854 * 10 8 6 34 34 H 0.96996 * 119.99686 * 180.02562 * 14 13 11 35 35 H 1.09002 * 110.48581 * 93.87863 * 19 6 5 36 36 H 1.09002 * 110.49003 * 216.52773 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8656 -1.8888 1.1727 6 6 3.4728 -1.9920 2.5894 7 1 4.4406 -1.4927 2.6363 8 6 3.5915 -3.4526 3.0292 9 1 2.6106 -3.9260 2.9856 10 6 4.1233 -3.5121 4.4626 11 6 4.5407 -4.1782 2.1107 12 1 5.3983 -3.6630 1.7039 13 6 4.3144 -5.4999 1.7898 14 7 5.1924 -6.1608 1.0675 15 14 2.7606 -6.3517 2.3810 16 1 1.6527 -6.0752 1.4316 17 1 2.9960 -7.8161 2.4540 18 1 2.3977 -5.8410 3.7274 19 6 2.4211 -1.2413 3.4387 20 6 1.7484 -0.3081 2.4562 21 8 1.0644 0.6460 2.7610 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.6562 -1.7773 0.4307 30 1 2.2645 -2.7716 0.9547 31 1 5.1389 -3.1173 4.4899 32 1 3.4837 -2.9148 5.1124 33 1 4.1260 -4.5464 4.8065 34 1 5.0330 -7.0905 0.8414 35 1 1.6976 -1.9415 3.8563 36 1 2.9065 -0.6738 4.2328 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260580206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:42 Heat of formation + Delta-G solvation = -54.604685 kcal Electronic energy + Delta-G solvation = -16278.102256 eV Core-core repulsion = 13761.476691 eV Total energy + Delta-G solvation = -2516.625565 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.18331 -36.47047 -35.52583 -33.15486 -31.44795 -28.67241 -27.09570 -27.01847 -24.98185 -22.21556 -21.95564 -19.19122 -18.46187 -17.08620 -16.26469 -15.74861 -14.95907 -14.31073 -13.82795 -13.66725 -13.32981 -13.11880 -12.96828 -12.50967 -12.30576 -12.16683 -11.94907 -11.87349 -11.35005 -11.15333 -11.11462 -10.99664 -10.72410 -10.70804 -10.10389 -9.78701 -9.63541 -9.16194 -8.97396 -8.58787 -8.30778 -6.14272 -4.13777 2.99151 3.22768 3.32883 3.34019 3.36937 4.35747 4.76802 5.07429 5.18463 5.18711 5.25969 5.33497 5.43029 5.62035 5.67862 5.82927 5.89696 5.93374 6.08862 6.10476 6.28680 6.31125 6.34669 6.36441 6.41422 6.59660 6.78682 6.84587 7.01182 7.15192 7.37848 7.55640 7.69645 8.44298 8.59546 8.90423 9.48835 10.98897 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.008283 C = 0.007699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.714851 B = 3379.685643 C = 3635.911148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 C -0.165 4.165 4 N -0.618 5.618 5 C 0.116 3.884 6 C -0.076 4.076 7 H 0.080 0.920 8 C 0.019 3.981 9 H 0.033 0.967 10 C -0.139 4.139 11 C -0.512 4.512 12 H 0.074 0.926 13 C 0.073 3.927 14 N -0.899 5.899 15 Si 0.872 3.128 16 H -0.276 1.276 17 H -0.290 1.290 18 H -0.264 1.264 19 C -0.157 4.157 20 C 0.518 3.482 21 O -0.551 6.551 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.025 0.975 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 8.988 -0.678 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.047 3.953 3 C -0.223 4.223 4 N -0.351 5.351 5 C -0.005 4.005 6 C -0.095 4.095 7 H 0.098 0.902 8 C 0.000 4.000 9 H 0.051 0.949 10 C -0.196 4.196 11 C -0.550 4.550 12 H 0.092 0.908 13 C -0.129 4.129 14 N -0.537 5.537 15 Si 0.699 3.301 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.189 1.189 19 C -0.197 4.197 20 C 0.307 3.693 21 O -0.430 6.430 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.530 9.323 -0.697 11.404 hybrid contribution -0.687 -0.767 0.131 1.038 sum -7.217 8.557 -0.566 11.208 Atomic orbital electron populations 1.22171 0.95191 1.02259 1.02810 1.20876 0.94177 0.92978 0.87281 1.22163 1.01302 0.96071 1.02781 1.48648 1.51356 1.29484 1.05654 1.22190 0.93327 0.85649 0.99373 1.22196 0.96665 0.98857 0.91818 0.90179 1.19182 0.97038 0.90243 0.93571 0.94896 1.21992 0.99978 0.99943 0.97727 1.20945 1.10457 0.95963 1.27600 0.90758 1.25035 0.96154 0.97181 0.94547 1.69900 1.34936 1.10326 1.38513 0.86947 0.84286 0.78746 0.80075 1.20220 1.21629 1.18885 1.22547 1.00017 0.98773 0.98319 1.21064 0.79672 0.84362 0.84200 1.90612 1.40586 1.29807 1.82007 0.92550 0.91138 0.91913 0.89559 0.92508 0.91928 0.91184 0.90418 0.90827 0.93457 0.95631 0.93845 0.92639 0.88380 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.20 37.16 0.34 -1.83 16 2 C 0.15 2.06 3.47 -67.93 -0.24 1.82 16 3 C -0.17 -2.11 9.20 37.16 0.34 -1.77 16 4 N -0.62 -10.00 2.83 -164.84 -0.47 -10.47 16 5 C 0.12 2.01 6.32 -3.12 -0.02 1.99 16 6 C -0.08 -1.36 2.67 -88.99 -0.24 -1.60 16 7 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 8 C 0.02 0.40 1.30 -91.77 -0.12 0.28 16 9 H 0.03 0.71 5.27 -51.93 -0.27 0.43 16 10 C -0.14 -2.69 9.08 37.16 0.34 -2.36 16 11 C -0.51 -12.96 8.31 -34.44 -0.29 -13.24 16 12 H 0.07 2.05 8.06 -52.48 -0.42 1.63 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -26.04 13.96 55.43 0.77 -25.27 16 15 Si 0.87 20.38 26.99 -169.99 -4.59 15.79 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.26 -5.91 6.82 56.52 0.39 -5.53 16 19 C -0.16 -2.56 5.41 -26.74 -0.14 -2.70 16 20 C 0.52 9.12 7.41 -10.86 -0.08 9.04 16 21 O -0.55 -10.86 15.12 5.56 0.08 -10.78 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 1.06 6.77 -51.93 -0.35 0.71 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.04 6.80 -51.93 -0.35 0.69 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.35 7.88 -51.92 -0.41 0.94 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.02 0.42 7.30 -51.93 -0.38 0.04 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.10 1.57 7.88 -51.93 -0.41 1.16 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -28.78 287.38 -6.04 -34.82 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.97 Total: 0.10 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.20 Total: -8.53 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.31 Total: -35.74 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.59 Total: 15.79 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.78 -6.04 -34.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260580206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.781 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds