Wall clock time and date at job start Mon Mar 30 2020 03:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 N 1.46503 * 109.47308 * 120.00203 * 2 1 3 5 5 C 1.46762 * 124.35197 * 120.00033 * 4 2 1 6 6 C 1.54481 * 105.47557 * 162.96391 * 5 4 2 7 7 H 1.09004 * 110.96798 * 143.56782 * 6 5 4 8 8 C 1.52998 * 110.96903 * 267.29753 * 6 5 4 9 9 H 1.08997 * 109.47013 * 56.90732 * 8 6 5 10 10 C 1.52996 * 109.47042 * 176.90941 * 8 6 5 11 11 C 1.50695 * 109.47096 * 296.90934 * 8 6 5 12 12 H 1.08009 * 120.00056 * 354.37182 * 11 8 6 13 13 C 1.37874 * 120.00120 * 174.37018 * 11 8 6 14 14 N 1.31518 * 120.00332 * 156.56427 * 13 11 8 15 15 Si 1.86801 * 120.00059 * 336.56799 * 13 11 8 16 16 H 1.48508 * 109.46874 * 179.97438 * 15 13 11 17 17 H 1.48497 * 109.46980 * 59.99868 * 15 13 11 18 18 H 1.48494 * 109.46909 * 299.99804 * 15 13 11 19 19 C 1.54631 * 101.79705 * 25.43562 * 6 5 4 20 20 C 1.34423 * 124.34594 * 299.97480 * 4 2 1 21 21 O 1.21276 * 124.94161 * 0.46315 * 20 4 2 22 22 H 1.09005 * 109.47278 * 299.99764 * 1 2 3 23 23 H 1.09003 * 109.47353 * 59.99866 * 1 2 3 24 24 H 1.09003 * 109.47387 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47278 * 240.00236 * 2 1 3 26 26 H 1.09002 * 109.47243 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.47509 * 300.00156 * 3 2 1 28 28 H 1.09004 * 109.47211 * 60.00366 * 3 2 1 29 29 H 1.08999 * 110.24444 * 43.96189 * 5 4 2 30 30 H 1.09003 * 110.31988 * 282.00113 * 5 4 2 31 31 H 1.08998 * 109.47020 * 172.70604 * 10 8 6 32 32 H 1.08998 * 109.47285 * 292.70622 * 10 8 6 33 33 H 1.09000 * 109.47562 * 52.70601 * 10 8 6 34 34 H 0.97004 * 119.99372 * 354.93749 * 14 13 11 35 35 H 1.08990 * 110.48726 * 93.86190 * 19 6 5 36 36 H 1.09006 * 110.48377 * 216.50755 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8656 -1.8888 1.1727 6 6 3.4728 -1.9920 2.5894 7 1 3.5573 -3.0326 2.9027 8 6 4.8312 -1.2912 2.6553 9 1 4.7185 -0.2510 2.3498 10 6 5.3650 -1.3471 4.0880 11 6 5.7992 -1.9840 1.7312 12 1 5.5063 -2.8915 1.2241 13 6 7.0587 -1.4594 1.5331 14 7 8.0401 -2.2382 1.1328 15 14 7.3716 0.3576 1.8331 16 1 8.7963 0.6678 1.5510 17 1 7.0650 0.6855 3.2486 18 1 6.5025 1.1638 0.9388 19 6 2.4212 -1.2419 3.4395 20 6 1.7484 -0.3080 2.4562 21 8 1.0645 0.6460 2.7610 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.6561 -1.7772 0.4307 30 1 2.2658 -2.7723 0.9542 31 1 6.3855 -0.9650 4.1107 32 1 4.7342 -0.7373 4.7348 33 1 5.3555 -2.3789 4.4393 34 1 7.8968 -3.1939 1.0477 35 1 1.6980 -1.9423 3.8569 36 1 2.9069 -0.6749 4.2338 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260580209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:44 Heat of formation + Delta-G solvation = -53.689997 kcal Electronic energy + Delta-G solvation = -16528.175955 eV Core-core repulsion = 14011.590053 eV Total energy + Delta-G solvation = -2516.585901 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20334 -36.43763 -35.45648 -33.20731 -31.27400 -28.62987 -27.11684 -27.01671 -24.50614 -22.16518 -21.97677 -19.15417 -18.40477 -17.52173 -16.26427 -15.52354 -15.05030 -14.02348 -13.83914 -13.61495 -13.37894 -13.28032 -13.10250 -12.56733 -12.12891 -11.96187 -11.82301 -11.54086 -11.34121 -11.25775 -11.08502 -10.94254 -10.49408 -10.28956 -10.22556 -9.72245 -9.61708 -9.14583 -8.91169 -8.25261 -8.19666 -6.48181 -4.07976 3.03755 3.39683 3.42254 3.44701 3.61229 4.49369 4.79233 5.10143 5.17351 5.23433 5.25866 5.38018 5.45985 5.61231 5.73713 5.85296 5.89899 5.97122 6.05519 6.09633 6.31653 6.35083 6.37628 6.45670 6.49938 6.55221 6.81581 6.90783 7.04919 7.22888 7.48733 7.59565 8.11875 8.34666 8.64267 8.86813 9.56680 10.88440 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.009553 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.975776 B = 2930.329441 C = 3164.648104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.610 5.610 5 C 0.107 3.893 6 C -0.076 4.076 7 H 0.084 0.916 8 C 0.026 3.974 9 H 0.020 0.980 10 C -0.144 4.144 11 C -0.604 4.604 12 H 0.058 0.942 13 C 0.039 3.961 14 N -0.900 5.900 15 Si 1.033 2.967 16 H -0.287 1.287 17 H -0.278 1.278 18 H -0.285 1.285 19 C -0.161 4.161 20 C 0.521 3.479 21 O -0.550 6.550 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.023 0.977 33 H 0.043 0.957 34 H 0.269 0.731 35 H 0.091 0.909 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.195 1.856 -0.555 11.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 C -0.226 4.226 4 N -0.344 5.344 5 C -0.015 4.015 6 C -0.095 4.095 7 H 0.102 0.898 8 C 0.007 3.993 9 H 0.038 0.962 10 C -0.202 4.202 11 C -0.641 4.641 12 H 0.077 0.923 13 C -0.167 4.167 14 N -0.533 5.533 15 Si 0.862 3.138 16 H -0.213 1.213 17 H -0.204 1.204 18 H -0.211 1.211 19 C -0.201 4.201 20 C 0.310 3.690 21 O -0.429 6.429 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.397 3.546 -0.599 11.002 hybrid contribution -1.073 -1.331 0.029 1.710 sum -11.471 2.215 -0.570 11.696 Atomic orbital electron populations 1.22169 0.95278 1.01925 1.02879 1.20858 0.93832 0.93268 0.87138 1.22180 1.01956 0.95856 1.02641 1.48455 1.51035 1.29265 1.05664 1.22307 0.93142 0.85454 1.00610 1.22145 0.95314 1.00227 0.91783 0.89753 1.18969 0.90930 0.95658 0.93778 0.96234 1.22172 1.00219 0.99704 0.98100 1.21845 0.99392 1.12581 1.30262 0.92350 1.25626 0.92024 1.05235 0.93785 1.70859 1.32309 1.06390 1.43693 0.84176 0.76002 0.76459 0.77206 1.21288 1.20380 1.21107 1.22588 0.99367 0.99284 0.98840 1.20978 0.79415 0.84473 0.84110 1.90609 1.40697 1.29655 1.81952 0.91133 0.91895 0.92824 0.89655 0.92005 0.91971 0.91199 0.88589 0.92677 0.93177 0.95836 0.93820 0.92123 0.89067 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.20 37.15 0.34 -1.80 16 2 C 0.15 2.24 3.47 -67.93 -0.24 2.00 16 3 C -0.17 -2.53 9.20 37.16 0.34 -2.18 16 4 N -0.61 -10.36 2.83 -164.80 -0.47 -10.83 16 5 C 0.11 1.82 6.67 -3.12 -0.02 1.80 16 6 C -0.08 -1.37 2.62 -88.99 -0.23 -1.61 16 7 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 8 C 0.03 0.57 1.48 -91.78 -0.14 0.43 16 9 H 0.02 0.46 6.71 -51.93 -0.35 0.11 16 10 C -0.14 -3.02 8.61 37.16 0.32 -2.70 16 11 C -0.60 -15.56 7.64 -34.44 -0.26 -15.82 16 12 H 0.06 1.59 7.86 -52.48 -0.41 1.17 16 13 C 0.04 1.09 5.18 -17.82 -0.09 0.99 16 14 N -0.90 -26.50 13.70 55.43 0.76 -25.74 16 15 Si 1.03 24.85 26.45 -169.99 -4.50 20.35 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.31 6.18 56.52 0.35 -5.96 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.16 -2.67 6.27 -26.69 -0.17 -2.84 16 20 C 0.52 9.61 7.41 -10.81 -0.08 9.53 16 21 O -0.55 -11.34 15.12 5.56 0.08 -11.26 16 22 H 0.07 1.07 6.77 -51.93 -0.35 0.72 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.18 6.80 -51.93 -0.35 0.82 16 29 H 0.10 1.82 6.94 -51.93 -0.36 1.46 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.12 5.51 -51.93 -0.29 0.84 16 32 H 0.02 0.43 6.63 -51.93 -0.34 0.08 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.27 7.85 8.73 -40.82 -0.36 7.49 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.10 1.68 6.25 -51.93 -0.32 1.36 16 LS Contribution 281.65 15.07 4.24 4.24 Total: -1.00 -29.39 281.65 -5.89 -35.28 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.79 Total: 0.16 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.23 Total: -12.20 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.29 Total: -36.57 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -4.50 Total: 20.35 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.39 -5.89 -35.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260580209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.412 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds