Wall clock time and date at job start Mon Mar 30 2020 03:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47139 * 2 1 4 4 N 1.46503 * 109.47308 * 120.00203 * 2 1 3 5 5 C 1.46762 * 124.35197 * 120.00033 * 4 2 1 6 6 C 1.54481 * 105.47557 * 162.96391 * 5 4 2 7 7 H 1.09004 * 110.96798 * 143.56782 * 6 5 4 8 8 C 1.52998 * 110.96903 * 267.29753 * 6 5 4 9 9 H 1.08997 * 109.47013 * 56.90732 * 8 6 5 10 10 C 1.52996 * 109.47042 * 176.90941 * 8 6 5 11 11 C 1.50695 * 109.47096 * 296.90934 * 8 6 5 12 12 H 1.08009 * 120.00056 * 354.37182 * 11 8 6 13 13 C 1.37874 * 120.00120 * 174.37018 * 11 8 6 14 14 N 1.31518 * 120.00332 * 156.56427 * 13 11 8 15 15 Si 1.86801 * 120.00059 * 336.56799 * 13 11 8 16 16 H 1.48508 * 109.46874 * 179.97438 * 15 13 11 17 17 H 1.48497 * 109.46980 * 59.99868 * 15 13 11 18 18 H 1.48494 * 109.46909 * 299.99804 * 15 13 11 19 19 C 1.54631 * 101.79705 * 25.43562 * 6 5 4 20 20 C 1.34423 * 124.34594 * 299.97480 * 4 2 1 21 21 O 1.21276 * 124.94161 * 0.46315 * 20 4 2 22 22 H 1.09005 * 109.47278 * 299.99764 * 1 2 3 23 23 H 1.09003 * 109.47353 * 59.99866 * 1 2 3 24 24 H 1.09003 * 109.47387 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47278 * 240.00236 * 2 1 3 26 26 H 1.09002 * 109.47243 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.47509 * 300.00156 * 3 2 1 28 28 H 1.09004 * 109.47211 * 60.00366 * 3 2 1 29 29 H 1.08999 * 110.24444 * 43.96189 * 5 4 2 30 30 H 1.09003 * 110.31988 * 282.00113 * 5 4 2 31 31 H 1.08998 * 109.47020 * 172.70604 * 10 8 6 32 32 H 1.08998 * 109.47285 * 292.70622 * 10 8 6 33 33 H 1.09000 * 109.47562 * 52.70601 * 10 8 6 34 34 H 0.97004 * 119.99372 * 354.93749 * 14 13 11 35 35 H 1.08990 * 110.48726 * 93.86190 * 19 6 5 36 36 H 1.09006 * 110.48377 * 216.50755 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8656 -1.8888 1.1727 6 6 3.4728 -1.9920 2.5894 7 1 3.5573 -3.0326 2.9027 8 6 4.8312 -1.2912 2.6553 9 1 4.7185 -0.2510 2.3498 10 6 5.3650 -1.3471 4.0880 11 6 5.7992 -1.9840 1.7312 12 1 5.5063 -2.8915 1.2241 13 6 7.0587 -1.4594 1.5331 14 7 8.0401 -2.2382 1.1328 15 14 7.3716 0.3576 1.8331 16 1 8.7963 0.6678 1.5510 17 1 7.0650 0.6855 3.2486 18 1 6.5025 1.1638 0.9388 19 6 2.4212 -1.2419 3.4395 20 6 1.7484 -0.3080 2.4562 21 8 1.0645 0.6460 2.7610 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.6561 -1.7772 0.4307 30 1 2.2658 -2.7723 0.9542 31 1 6.3855 -0.9650 4.1107 32 1 4.7342 -0.7373 4.7348 33 1 5.3555 -2.3789 4.4393 34 1 7.8968 -3.1939 1.0477 35 1 1.6980 -1.9423 3.8569 36 1 2.9069 -0.6749 4.2338 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260580209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:43 Heat of formation + Delta-G solvation = -71.489906 kcal Electronic energy + Delta-G solvation = -16528.947817 eV Core-core repulsion = 14011.590053 eV Total energy + Delta-G solvation = -2517.357763 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.58634 -37.98754 -36.80823 -34.97242 -33.01873 -30.06738 -28.56666 -28.12848 -26.40169 -23.66718 -23.31769 -20.82351 -19.83679 -19.44054 -17.59208 -16.95653 -16.43710 -15.79818 -15.37709 -15.13933 -14.82563 -14.71455 -14.47953 -13.97085 -13.68667 -13.43895 -13.25122 -13.01746 -12.88192 -12.62819 -12.32861 -12.21751 -12.19760 -12.01788 -11.82473 -11.55285 -11.27717 -10.89526 -10.53507 -10.28844 -9.59318 -8.63809 -6.22419 1.47251 1.49501 1.64484 1.69107 2.14848 2.50352 3.08423 3.50170 3.73001 3.97980 4.02629 4.12567 4.20986 4.30690 4.62292 4.68035 4.69596 4.75275 4.76060 4.79781 4.88542 4.89533 5.00477 5.02763 5.14727 5.21116 5.28786 5.33987 5.50883 5.74000 5.78923 6.12154 6.19849 6.25915 6.72489 7.26372 7.47542 8.72028 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.009553 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.975776 B = 2930.329441 C = 3164.648104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 C -0.163 4.163 4 N -0.610 5.610 5 C 0.111 3.889 6 C -0.075 4.075 7 H 0.096 0.904 8 C 0.023 3.977 9 H 0.007 0.993 10 C -0.143 4.143 11 C -0.588 4.588 12 H 0.037 0.963 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 1.064 2.936 16 H -0.294 1.294 17 H -0.256 1.256 18 H -0.276 1.276 19 C -0.151 4.151 20 C 0.512 3.488 21 O -0.577 6.577 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.041 0.959 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.030 0.970 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.257 0.743 35 H 0.123 0.877 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 2.082 -0.255 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 C -0.221 4.221 4 N -0.343 5.343 5 C -0.011 4.011 6 C -0.094 4.094 7 H 0.114 0.886 8 C 0.004 3.996 9 H 0.025 0.975 10 C -0.200 4.200 11 C -0.626 4.626 12 H 0.055 0.945 13 C -0.208 4.208 14 N -0.573 5.573 15 Si 0.888 3.112 16 H -0.220 1.220 17 H -0.181 1.181 18 H -0.201 1.201 19 C -0.191 4.191 20 C 0.302 3.698 21 O -0.459 6.459 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.141 0.859 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.152 3.765 -0.303 12.726 hybrid contribution -0.576 -1.443 -0.114 1.557 sum -12.728 2.323 -0.417 12.945 Atomic orbital electron populations 1.22073 0.93658 1.02476 1.02971 1.21163 0.95150 0.92945 0.86952 1.22138 1.00544 0.96394 1.03048 1.48603 1.50440 1.29172 1.06105 1.22233 0.93021 0.86630 0.99229 1.22033 0.93654 1.00520 0.93154 0.88602 1.18942 0.92369 0.94793 0.93472 0.97479 1.22091 0.99529 1.00686 0.97707 1.22064 0.99636 1.11385 1.29497 0.94473 1.26636 0.92542 1.07790 0.93858 1.70958 1.33469 1.05892 1.47024 0.83758 0.75648 0.73204 0.78552 1.21996 1.18083 1.20141 1.22567 0.99199 0.99203 0.98083 1.21300 0.79298 0.84384 0.84861 1.90599 1.42061 1.30802 1.82406 0.93459 0.89311 0.92023 0.87971 0.94011 0.89008 0.93344 0.90977 0.89734 0.95136 0.93029 0.93124 0.93369 0.85941 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.20 71.98 0.66 -2.96 16 2 C 0.14 3.82 3.47 44.99 0.16 3.98 16 3 C -0.16 -4.68 9.20 71.98 0.66 -4.01 16 4 N -0.61 -19.49 2.83 -793.89 -2.25 -21.74 16 5 C 0.11 3.55 6.67 86.83 0.58 4.13 16 6 C -0.07 -2.53 2.62 -9.74 -0.03 -2.55 16 7 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 8 C 0.02 0.99 1.48 -11.54 -0.02 0.97 16 9 H 0.01 0.32 6.71 -2.39 -0.02 0.31 16 10 C -0.14 -5.66 8.61 71.98 0.62 -5.04 16 11 C -0.59 -30.25 7.64 25.60 0.20 -30.06 16 12 H 0.04 2.03 7.86 -2.91 -0.02 2.01 16 13 C -0.01 -0.47 5.18 84.65 0.44 -0.03 16 14 N -0.94 -56.40 13.70 21.45 0.29 -56.11 16 15 Si 1.06 50.02 26.45 68.60 1.81 51.84 16 16 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 17 H -0.26 -11.06 6.18 99.48 0.61 -10.45 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.15 -4.55 6.27 30.62 0.19 -4.36 16 20 C 0.51 17.85 7.41 87.93 0.65 18.50 16 21 O -0.58 -23.08 15.12 -3.02 -0.05 -23.13 16 22 H 0.05 1.35 6.77 -2.38 -0.02 1.33 16 23 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.10 2.45 8.07 -2.38 -0.02 2.43 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.59 6.80 -2.38 -0.02 1.57 16 29 H 0.07 2.67 6.94 -2.39 -0.02 2.65 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.03 1.30 5.51 -2.39 -0.01 1.29 16 32 H 0.05 1.75 6.63 -2.39 -0.02 1.73 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.26 15.50 8.73 -92.70 -0.81 14.69 16 35 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.10 3.04 6.25 -2.38 -0.01 3.03 16 Total: -1.00 -63.58 281.65 4.84 -58.74 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.91 Total: 11.83 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 4.12 Total: -21.43 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -1.95 Total: -77.85 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 1.81 Total: 51.84 kcal Total: -63.58 4.84 -58.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260580209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.750 kcal (2) G-P(sol) polarization free energy of solvation -63.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds