Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47295 * 2 1 4 4 N 1.46493 * 109.47230 * 120.00394 * 2 1 3 5 5 C 1.34427 * 124.34420 * 295.80462 * 4 2 1 6 6 O 1.21277 * 124.94421 * 0.45554 * 5 4 2 7 7 C 1.51285 * 110.11161 * 180.40698 * 5 4 2 8 8 C 1.54625 * 104.19686 * 16.25603 * 7 5 4 9 9 C 1.46758 * 124.35499 * 115.80455 * 4 2 1 10 10 H 1.09000 * 110.24889 * 281.98547 * 9 4 2 11 11 C 1.53006 * 110.31855 * 43.94716 * 9 4 2 12 12 H 1.08997 * 109.46495 * 297.82058 * 11 9 4 13 13 C 1.52995 * 109.47080 * 177.82282 * 11 9 4 14 14 C 1.50701 * 109.47217 * 57.81698 * 11 9 4 15 15 H 1.08000 * 119.99843 * 0.02562 * 14 11 9 16 16 C 1.37872 * 119.99789 * 180.02562 * 14 11 9 17 17 N 1.31513 * 120.00445 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99860 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47233 * 89.99745 * 18 16 14 20 20 H 1.48499 * 109.47252 * 209.99800 * 18 16 14 21 21 H 1.48499 * 109.46931 * 329.99841 * 18 16 14 22 22 H 1.08999 * 109.47021 * 299.99949 * 1 2 3 23 23 H 1.09002 * 109.47081 * 60.00214 * 1 2 3 24 24 H 1.09003 * 109.46876 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47021 * 240.00050 * 2 1 3 26 26 H 1.08996 * 109.47029 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46972 * 300.00456 * 3 2 1 28 28 H 1.08996 * 109.46573 * 59.99884 * 3 2 1 29 29 H 1.09000 * 110.48975 * 257.57111 * 7 5 4 30 30 H 1.09005 * 110.48689 * 134.93066 * 7 5 4 31 31 H 1.08997 * 110.97415 * 93.32342 * 8 7 5 32 32 H 1.09007 * 110.96847 * 217.08306 * 8 7 5 33 33 H 1.09000 * 109.47199 * 299.79754 * 13 11 9 34 34 H 1.09000 * 109.47344 * 59.80108 * 13 11 9 35 35 H 1.09007 * 109.47094 * 179.80660 * 13 11 9 36 36 H 0.96998 * 120.00483 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.8156 -0.2634 2.4544 6 8 1.2004 0.7367 2.7578 7 6 2.4657 -1.2124 3.4370 8 6 3.4408 -2.0444 2.5723 9 6 2.7916 -1.9378 1.1745 10 1 2.1321 -2.7877 0.9991 11 6 3.8718 -1.8746 0.0927 12 1 3.4011 -1.7687 -0.8847 13 6 4.7001 -3.1605 0.1233 14 6 4.7702 -0.6920 0.3483 15 1 4.5893 -0.0500 1.1977 16 6 5.8232 -0.4297 -0.5021 17 7 6.0439 -1.2118 -1.5362 18 14 6.9374 1.0357 -0.1849 19 1 8.0672 0.6196 0.6845 20 1 7.4672 1.5434 -1.4759 21 1 6.1636 2.1091 0.4891 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7170 -1.8580 3.8962 30 1 3.0113 -0.6570 4.1999 31 1 4.4375 -1.6034 2.5743 32 1 3.4737 -3.0807 2.9090 33 1 5.1735 -3.2647 1.0995 34 1 4.0496 -4.0161 -0.0582 35 1 5.4674 -3.1170 -0.6498 36 1 6.7845 -1.0271 -2.1347 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260587107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -49.676644 kcal Electronic energy + Delta-G solvation = -16921.253200 eV Core-core repulsion = 14404.841331 eV Total energy + Delta-G solvation = -2516.411869 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99449 -36.33990 -34.54304 -33.37326 -30.61268 -29.37405 -26.62689 -25.64667 -25.11045 -22.14719 -21.80191 -19.45082 -17.98314 -16.63922 -15.67695 -15.39783 -14.76285 -14.32852 -13.67948 -13.17967 -13.13068 -13.01019 -12.69609 -12.35364 -12.08769 -11.52388 -11.50221 -11.21808 -11.03803 -10.88032 -10.69545 -10.61707 -10.50994 -10.42667 -10.25931 -9.95523 -9.49492 -8.94606 -8.77331 -8.37249 -7.81464 -6.03246 -4.07632 3.26708 3.28492 3.35317 3.39831 3.80234 4.40644 5.01388 5.24618 5.28533 5.52440 5.53837 5.67187 5.73160 5.91897 6.07274 6.12020 6.13846 6.25563 6.35858 6.45033 6.46964 6.48987 6.73247 6.79057 6.88041 7.02058 7.04848 7.14845 7.46113 7.63797 7.78165 7.99387 8.12394 8.37397 8.92328 8.95323 9.56623 11.02660 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.011620 C = 0.010562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.163024 B = 2409.060816 C = 2650.270501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 C -0.165 4.165 4 N -0.583 5.583 5 C 0.515 3.485 6 O -0.558 6.558 7 C -0.158 4.158 8 C -0.121 4.121 9 C 0.135 3.865 10 H 0.053 0.947 11 C 0.038 3.962 12 H 0.030 0.970 13 C -0.135 4.135 14 C -0.497 4.497 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.882 3.118 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.007 0.993 35 H 0.085 0.915 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 -2.162 3.743 7.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.058 3.942 3 C -0.223 4.223 4 N -0.314 5.314 5 C 0.303 3.697 6 O -0.438 6.438 7 C -0.198 4.198 8 C -0.159 4.159 9 C 0.032 3.968 10 H 0.071 0.929 11 C 0.019 3.981 12 H 0.048 0.952 13 C -0.194 4.194 14 C -0.535 4.535 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.711 3.289 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.026 0.974 35 H 0.103 0.897 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.065 -1.632 3.652 7.265 hybrid contribution 0.772 0.720 0.022 1.056 sum -5.293 -0.912 3.674 6.507 Atomic orbital electron populations 1.22205 0.96380 1.01382 1.02268 1.20727 0.92150 0.93587 0.87741 1.22151 1.03389 0.95400 1.01387 1.48270 1.52625 1.25151 1.05338 1.20782 0.79394 0.85173 0.84316 1.90598 1.44013 1.27240 1.81999 1.22339 1.00002 0.98921 0.98525 1.22691 1.00274 0.99676 0.93270 1.21964 0.92918 0.84047 0.97840 0.92888 1.18956 0.91534 0.94970 0.92645 0.95249 1.21772 1.00785 0.95184 1.01635 1.21006 1.11382 1.10255 1.10898 0.92489 1.24896 0.97499 0.96200 0.95160 1.69867 1.30427 1.37719 1.14916 0.86742 0.81197 0.83454 0.77556 1.20789 1.21366 1.19915 0.91834 0.92174 0.93169 0.89024 0.90593 0.92964 0.91930 0.89270 0.89163 0.88252 0.90918 0.95066 0.97399 0.89662 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.25 37.16 0.34 -2.29 16 2 C 0.16 2.99 3.00 -67.93 -0.20 2.79 16 3 C -0.17 -3.19 9.14 37.16 0.34 -2.85 16 4 N -0.58 -11.26 2.16 -157.38 -0.34 -11.59 16 5 C 0.52 10.15 7.42 -10.86 -0.08 10.07 16 6 O -0.56 -12.38 15.13 5.56 0.08 -12.30 16 7 C -0.16 -2.53 6.86 -26.74 -0.18 -2.71 16 8 C -0.12 -2.03 5.29 -25.10 -0.13 -2.16 16 9 C 0.14 2.54 3.09 -67.01 -0.21 2.33 16 10 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 11 C 0.04 0.84 1.83 -91.77 -0.17 0.67 16 12 H 0.03 0.72 6.83 -51.93 -0.35 0.37 16 13 C -0.14 -2.92 8.75 37.16 0.33 -2.60 16 14 C -0.50 -12.26 6.14 -34.44 -0.21 -12.47 16 15 H 0.06 1.45 6.94 -52.49 -0.36 1.09 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.00 11.32 55.43 0.63 -23.37 16 18 Si 0.88 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.06 1.11 7.07 -51.93 -0.37 0.74 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 1.77 6.55 -51.93 -0.34 1.43 16 26 H 0.08 1.66 7.31 -51.93 -0.38 1.28 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.27 6.53 -51.93 -0.34 0.93 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.10 1.87 6.42 -51.93 -0.33 1.54 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.63 7.28 -51.93 -0.38 0.25 16 34 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 35 H 0.08 2.09 6.08 -51.93 -0.32 1.78 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 279.98 15.07 4.22 4.22 Total: -1.00 -27.71 279.98 -6.39 -34.10 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.69 Total: 0.91 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.27 Total: -7.67 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.29 Total: -34.96 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.71 -6.39 -34.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.573 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds