Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47295 * 2 1 4 4 N 1.46493 * 109.47230 * 120.00394 * 2 1 3 5 5 C 1.34427 * 124.34420 * 295.80462 * 4 2 1 6 6 O 1.21277 * 124.94421 * 0.45554 * 5 4 2 7 7 C 1.51285 * 110.11161 * 180.40698 * 5 4 2 8 8 C 1.54625 * 104.19686 * 16.25603 * 7 5 4 9 9 C 1.46758 * 124.35499 * 115.80455 * 4 2 1 10 10 H 1.09000 * 110.24889 * 281.98547 * 9 4 2 11 11 C 1.53006 * 110.31855 * 43.94716 * 9 4 2 12 12 H 1.08997 * 109.46495 * 297.82058 * 11 9 4 13 13 C 1.52995 * 109.47080 * 177.82282 * 11 9 4 14 14 C 1.50701 * 109.47217 * 57.81698 * 11 9 4 15 15 H 1.08000 * 119.99843 * 0.02562 * 14 11 9 16 16 C 1.37872 * 119.99789 * 180.02562 * 14 11 9 17 17 N 1.31513 * 120.00445 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99860 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47233 * 89.99745 * 18 16 14 20 20 H 1.48499 * 109.47252 * 209.99800 * 18 16 14 21 21 H 1.48499 * 109.46931 * 329.99841 * 18 16 14 22 22 H 1.08999 * 109.47021 * 299.99949 * 1 2 3 23 23 H 1.09002 * 109.47081 * 60.00214 * 1 2 3 24 24 H 1.09003 * 109.46876 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47021 * 240.00050 * 2 1 3 26 26 H 1.08996 * 109.47029 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46972 * 300.00456 * 3 2 1 28 28 H 1.08996 * 109.46573 * 59.99884 * 3 2 1 29 29 H 1.09000 * 110.48975 * 257.57111 * 7 5 4 30 30 H 1.09005 * 110.48689 * 134.93066 * 7 5 4 31 31 H 1.08997 * 110.97415 * 93.32342 * 8 7 5 32 32 H 1.09007 * 110.96847 * 217.08306 * 8 7 5 33 33 H 1.09000 * 109.47199 * 299.79754 * 13 11 9 34 34 H 1.09000 * 109.47344 * 59.80108 * 13 11 9 35 35 H 1.09007 * 109.47094 * 179.80660 * 13 11 9 36 36 H 0.96998 * 120.00483 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.8156 -0.2634 2.4544 6 8 1.2004 0.7367 2.7578 7 6 2.4657 -1.2124 3.4370 8 6 3.4408 -2.0444 2.5723 9 6 2.7916 -1.9378 1.1745 10 1 2.1321 -2.7877 0.9991 11 6 3.8718 -1.8746 0.0927 12 1 3.4011 -1.7687 -0.8847 13 6 4.7001 -3.1605 0.1233 14 6 4.7702 -0.6920 0.3483 15 1 4.5893 -0.0500 1.1977 16 6 5.8232 -0.4297 -0.5021 17 7 6.0439 -1.2118 -1.5362 18 14 6.9374 1.0357 -0.1849 19 1 8.0672 0.6196 0.6845 20 1 7.4672 1.5434 -1.4759 21 1 6.1636 2.1091 0.4891 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7170 -1.8580 3.8962 30 1 3.0113 -0.6570 4.1999 31 1 4.4375 -1.6034 2.5743 32 1 3.4737 -3.0807 2.9090 33 1 5.1735 -3.2647 1.0995 34 1 4.0496 -4.0161 -0.0582 35 1 5.4674 -3.1170 -0.6498 36 1 6.7845 -1.0271 -2.1347 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260587107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -64.692147 kcal Electronic energy + Delta-G solvation = -16921.904321 eV Core-core repulsion = 14404.841331 eV Total energy + Delta-G solvation = -2517.062990 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.49492 -37.96438 -36.04588 -35.13719 -32.43235 -30.78235 -28.09037 -27.19811 -27.03311 -23.66691 -23.26186 -21.13748 -19.52088 -18.34447 -17.31832 -16.99844 -16.49461 -15.99428 -15.25902 -14.70388 -14.64798 -14.56538 -14.29387 -13.80561 -13.61038 -13.25110 -12.94419 -12.83921 -12.77120 -12.56776 -12.41967 -12.20786 -12.09411 -11.99030 -11.83577 -11.68377 -11.18905 -10.72941 -10.40899 -10.31239 -9.35571 -8.02875 -6.09619 1.36721 1.41778 1.48249 1.77889 2.35072 2.45448 3.26892 3.61990 3.86632 4.10990 4.20797 4.27528 4.35629 4.50658 4.68358 4.75549 4.77994 4.82290 4.92882 4.97306 5.00788 5.11564 5.18472 5.24368 5.27322 5.42184 5.43912 5.53857 5.70300 5.92319 5.95619 6.20092 6.45741 6.55868 6.97902 7.42093 7.55773 9.01555 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.011620 C = 0.010562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.163024 B = 2409.060816 C = 2650.270501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.153 3.847 3 C -0.157 4.157 4 N -0.588 5.588 5 C 0.502 3.498 6 O -0.590 6.590 7 C -0.147 4.147 8 C -0.114 4.114 9 C 0.135 3.865 10 H 0.077 0.923 11 C 0.039 3.961 12 H 0.002 0.998 13 C -0.127 4.127 14 C -0.486 4.486 15 H 0.045 0.955 16 C 0.021 3.979 17 N -0.914 5.914 18 Si 0.926 3.074 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.281 1.281 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.040 0.960 34 H 0.032 0.968 35 H 0.052 0.948 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 -3.143 4.758 8.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 C -0.215 4.215 4 N -0.318 5.318 5 C 0.292 3.708 6 O -0.473 6.473 7 C -0.186 4.186 8 C -0.152 4.152 9 C 0.032 3.968 10 H 0.095 0.905 11 C 0.020 3.980 12 H 0.020 0.980 13 C -0.185 4.185 14 C -0.524 4.524 15 H 0.063 0.937 16 C -0.177 4.177 17 N -0.555 5.555 18 Si 0.755 3.245 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.206 1.206 22 H 0.067 0.933 23 H 0.100 0.900 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.913 -2.622 4.670 8.744 hybrid contribution 1.020 1.043 -0.319 1.494 sum -5.893 -1.579 4.350 7.493 Atomic orbital electron populations 1.22076 0.93984 1.02281 1.02560 1.20820 0.94035 0.92696 0.87410 1.22048 1.01074 0.96450 1.01877 1.48438 1.52446 1.25358 1.05600 1.21456 0.79092 0.85279 0.85006 1.90578 1.45498 1.28691 1.82496 1.22358 1.00284 0.98359 0.97625 1.22649 0.98822 1.01694 0.92041 1.21969 0.92360 0.84581 0.97844 0.90512 1.18881 0.92132 0.94407 0.92620 0.97998 1.21610 1.00226 0.95693 1.01003 1.21149 1.11076 1.10475 1.09708 0.93668 1.25411 0.98910 0.97901 0.95473 1.69974 1.30969 1.38875 1.15688 0.86049 0.80005 0.81355 0.77130 1.20329 1.21588 1.20624 0.93306 0.90032 0.91948 0.90077 0.93857 0.90705 0.93168 0.85947 0.88300 0.90666 0.87434 0.94083 0.94858 0.92894 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.25 71.98 0.67 -3.91 16 2 C 0.15 5.59 3.00 44.99 0.13 5.73 16 3 C -0.16 -6.06 9.14 71.98 0.66 -5.40 16 4 N -0.59 -21.95 2.16 -770.41 -1.66 -23.61 16 5 C 0.50 19.00 7.42 87.90 0.65 19.65 16 6 O -0.59 -25.75 15.13 -3.02 -0.05 -25.79 16 7 C -0.15 -4.23 6.86 30.59 0.21 -4.02 16 8 C -0.11 -3.47 5.29 31.65 0.17 -3.30 16 9 C 0.14 4.77 3.09 45.45 0.14 4.91 16 10 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 11 C 0.04 1.68 1.83 -11.54 -0.02 1.66 16 12 H 0.00 0.10 6.83 -2.39 -0.02 0.08 16 13 C -0.13 -5.29 8.75 71.98 0.63 -4.66 16 14 C -0.49 -24.01 6.14 25.60 0.16 -23.85 16 15 H 0.05 2.32 6.94 -2.91 -0.02 2.30 16 16 C 0.02 1.11 5.30 84.65 0.45 1.56 16 17 N -0.91 -49.94 11.32 21.45 0.24 -49.70 16 18 Si 0.93 43.02 29.54 68.60 2.03 45.04 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 22 H 0.05 1.63 7.07 -2.39 -0.02 1.61 16 23 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.08 3.13 6.55 -2.39 -0.02 3.11 16 26 H 0.04 1.92 7.31 -2.39 -0.02 1.91 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 2.05 6.53 -2.39 -0.02 2.03 16 29 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 31 H 0.07 2.68 6.42 -2.39 -0.02 2.66 16 32 H 0.11 2.54 8.14 -2.38 -0.02 2.53 16 33 H 0.04 1.59 7.28 -2.39 -0.02 1.57 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.05 2.58 6.08 -2.38 -0.01 2.56 16 36 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -59.87 279.98 5.45 -54.42 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.05 Total: 11.29 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 3.84 Total: -11.64 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -1.42 Total: -73.31 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -59.87 5.45 -54.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.276 kcal (2) G-P(sol) polarization free energy of solvation -59.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds