Wall clock time and date at job start Mon Mar 30 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47299 * 2 1 4 4 N 1.46500 * 109.47620 * 120.00422 * 2 1 3 5 5 C 1.34413 * 124.34669 * 300.02422 * 4 2 1 6 6 O 1.21286 * 124.94417 * 0.36334 * 5 4 2 7 7 C 1.51281 * 110.11728 * 180.38680 * 5 4 2 8 8 C 1.54629 * 104.19263 * 16.24939 * 7 5 4 9 9 C 1.46767 * 124.34995 * 119.99732 * 4 2 1 10 10 H 1.08995 * 110.24172 * 282.09594 * 9 4 2 11 11 C 1.52997 * 110.24284 * 44.00786 * 9 4 2 12 12 H 1.09001 * 109.47111 * 304.82912 * 11 9 4 13 13 C 1.52999 * 109.47604 * 64.83615 * 11 9 4 14 14 C 1.50708 * 109.46990 * 184.83403 * 11 9 4 15 15 H 1.08002 * 119.99509 * 359.97438 * 14 11 9 16 16 C 1.37870 * 120.00077 * 179.72525 * 14 11 9 17 17 N 1.31517 * 120.00015 * 0.27466 * 16 14 11 18 18 Si 1.86801 * 120.00105 * 180.27708 * 16 14 11 19 19 H 1.48493 * 109.47553 * 89.99455 * 18 16 14 20 20 H 1.48500 * 109.47121 * 209.99926 * 18 16 14 21 21 H 1.48507 * 109.46971 * 329.99588 * 18 16 14 22 22 H 1.08992 * 109.47626 * 59.99897 * 1 2 3 23 23 H 1.09003 * 109.47042 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47001 * 299.99210 * 1 2 3 25 25 H 1.09001 * 109.47001 * 240.00790 * 2 1 3 26 26 H 1.08991 * 109.47284 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46810 * 300.01021 * 3 2 1 28 28 H 1.09001 * 109.46449 * 60.00452 * 3 2 1 29 29 H 1.08993 * 110.49298 * 134.92803 * 7 5 4 30 30 H 1.09002 * 110.48674 * 257.57538 * 7 5 4 31 31 H 1.09001 * 110.97084 * 217.08297 * 8 7 5 32 32 H 1.08998 * 110.97089 * 93.32621 * 8 7 5 33 33 H 1.09001 * 109.47009 * 68.52062 * 13 11 9 34 34 H 1.08997 * 109.47202 * 188.52520 * 13 11 9 35 35 H 1.09001 * 109.47040 * 308.52576 * 13 11 9 36 36 H 0.97003 * 120.00006 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7478 -0.3087 2.4561 6 8 1.0645 0.6458 2.7610 7 6 2.4199 -1.2423 3.4385 8 6 3.4721 -1.9926 2.5895 9 6 2.8657 -1.8889 1.1725 10 1 2.2650 -2.7712 0.9522 11 6 3.9760 -1.7317 0.1316 12 1 3.5347 -1.5041 -0.8387 13 6 4.9081 -0.5921 0.5481 14 6 4.7616 -3.0144 0.0377 15 1 4.4958 -3.8571 0.6587 16 6 5.8164 -3.1136 -0.8446 17 7 6.1404 -2.0872 -1.6004 18 14 6.7854 -4.7060 -0.9666 19 1 6.1679 -5.5840 -1.9927 20 1 8.1873 -4.4041 -1.3522 21 1 6.7714 -5.3960 0.3484 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8933 -0.5137 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6767 1.9563 0.8901 29 1 2.9049 -0.6753 4.2331 30 1 1.6963 -1.9427 3.8555 31 1 3.5559 -3.0333 2.9026 32 1 4.4399 -1.4934 2.6372 33 1 5.4632 -0.8842 1.4396 34 1 5.6063 -0.3796 -0.2614 35 1 4.3186 0.2992 0.7629 36 1 6.8823 -2.1572 -2.2214 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260587114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:32 Heat of formation + Delta-G solvation = -47.544927 kcal Electronic energy + Delta-G solvation = -16701.672656 eV Core-core repulsion = 14185.353225 eV Total energy + Delta-G solvation = -2516.319431 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.15628 -36.45618 -34.69647 -33.42897 -30.55433 -29.50667 -26.89419 -25.77081 -25.09661 -22.26497 -21.98257 -19.52601 -17.92567 -16.42093 -15.89029 -15.64857 -14.81941 -14.44000 -13.84425 -13.46229 -13.24761 -13.13009 -12.69297 -12.45879 -12.28975 -11.70425 -11.37448 -11.28186 -11.25521 -11.00081 -10.84831 -10.76686 -10.62793 -10.44927 -10.17206 -9.71646 -9.55580 -8.99819 -8.86419 -8.40253 -7.96975 -6.07032 -4.13661 3.13730 3.25397 3.33108 3.34789 3.63821 4.37466 4.92541 5.19417 5.24925 5.37931 5.47503 5.49427 5.60874 5.80872 5.94821 6.03503 6.07917 6.10502 6.19865 6.25125 6.44576 6.52258 6.54517 6.63757 6.73305 6.93678 7.07884 7.21916 7.32990 7.61614 7.75832 7.93650 8.04397 8.31869 8.78213 8.89655 9.51751 10.99553 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035972 B = 0.008737 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.202189 B = 3203.953822 C = 3553.786578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 C -0.167 4.167 4 N -0.598 5.598 5 C 0.514 3.486 6 O -0.556 6.556 7 C -0.159 4.159 8 C -0.120 4.120 9 C 0.134 3.866 10 H 0.066 0.934 11 C 0.043 3.957 12 H 0.030 0.970 13 C -0.136 4.136 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.014 0.986 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 1.340 4.108 7.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 C -0.225 4.225 4 N -0.330 5.330 5 C 0.302 3.698 6 O -0.436 6.436 7 C -0.200 4.200 8 C -0.158 4.158 9 C 0.032 3.968 10 H 0.084 0.916 11 C 0.024 3.976 12 H 0.048 0.952 13 C -0.193 4.193 14 C -0.553 4.553 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.525 5.525 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.033 0.967 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.086 1.915 4.038 7.551 hybrid contribution 0.675 -0.986 -0.230 1.217 sum -5.411 0.929 3.809 6.682 Atomic orbital electron populations 1.22166 0.95692 1.01814 1.02522 1.20844 0.93259 0.93120 0.87943 1.22226 1.02274 0.95915 1.02089 1.48602 1.49971 1.29166 1.05273 1.20865 0.80009 0.84522 0.84365 1.90608 1.41127 1.29847 1.82057 1.22380 0.99819 0.99251 0.98508 1.22688 0.98761 1.01069 0.93258 1.22090 0.92110 0.85174 0.97469 0.91576 1.18897 0.90792 0.95418 0.92493 0.95175 1.21893 1.00083 0.96364 1.00958 1.21018 1.14382 0.97847 1.22020 0.92440 1.24929 0.97164 0.96243 0.95443 1.69913 1.28852 1.29642 1.24139 0.86614 0.79328 0.83775 0.78384 1.20765 1.21313 1.19875 0.92066 0.92876 0.91443 0.88859 0.91551 0.92299 0.91693 0.89125 0.88968 0.90180 0.89024 0.94949 0.90671 0.96715 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.20 37.16 0.34 -2.14 16 2 C 0.15 2.58 3.07 -67.93 -0.21 2.38 16 3 C -0.17 -2.78 9.08 37.16 0.34 -2.44 16 4 N -0.60 -10.89 2.04 -157.37 -0.32 -11.21 16 5 C 0.51 9.49 7.41 -10.86 -0.08 9.41 16 6 O -0.56 -11.54 15.12 5.55 0.08 -11.45 16 7 C -0.16 -2.45 6.86 -26.74 -0.18 -2.63 16 8 C -0.12 -2.02 6.11 -25.10 -0.15 -2.17 16 9 C 0.13 2.54 2.99 -67.01 -0.20 2.34 16 10 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 11 C 0.04 0.97 1.91 -91.77 -0.17 0.80 16 12 H 0.03 0.75 6.58 -51.93 -0.34 0.41 16 13 C -0.14 -3.06 8.15 37.16 0.30 -2.76 16 14 C -0.51 -12.86 8.15 -34.44 -0.28 -13.14 16 15 H 0.06 1.40 7.74 -52.49 -0.41 0.99 16 16 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 17 N -0.89 -24.15 11.43 55.43 0.63 -23.51 16 18 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 1.12 6.77 -51.93 -0.35 0.77 16 25 H 0.09 1.66 6.51 -51.93 -0.34 1.33 16 26 H 0.07 1.19 6.02 -51.93 -0.31 0.87 16 27 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.06 1.15 6.80 -51.93 -0.35 0.80 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.65 5.46 -51.93 -0.28 1.36 16 33 H 0.03 0.71 6.24 -51.93 -0.32 0.39 16 34 H 0.07 1.90 6.36 -51.93 -0.33 1.57 16 35 H 0.01 0.30 5.29 -51.93 -0.27 0.02 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 276.76 15.07 4.17 4.17 Total: -1.00 -27.73 276.76 -6.26 -33.99 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.41 Total: 1.57 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.39 Total: -8.77 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.31 Total: -34.72 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.73 -6.26 -33.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.559 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds