Wall clock time and date at job start Mon Mar 30 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47299 * 2 1 4 4 N 1.46500 * 109.47620 * 120.00422 * 2 1 3 5 5 C 1.34413 * 124.34669 * 300.02422 * 4 2 1 6 6 O 1.21286 * 124.94417 * 0.36334 * 5 4 2 7 7 C 1.51281 * 110.11728 * 180.38680 * 5 4 2 8 8 C 1.54629 * 104.19263 * 16.24939 * 7 5 4 9 9 C 1.46767 * 124.34995 * 119.99732 * 4 2 1 10 10 H 1.08995 * 110.24172 * 282.09594 * 9 4 2 11 11 C 1.52997 * 110.24284 * 44.00786 * 9 4 2 12 12 H 1.09001 * 109.47111 * 304.82912 * 11 9 4 13 13 C 1.52999 * 109.47604 * 64.83615 * 11 9 4 14 14 C 1.50708 * 109.46990 * 184.83403 * 11 9 4 15 15 H 1.08002 * 119.99509 * 359.97438 * 14 11 9 16 16 C 1.37870 * 120.00077 * 179.72525 * 14 11 9 17 17 N 1.31517 * 120.00015 * 0.27466 * 16 14 11 18 18 Si 1.86801 * 120.00105 * 180.27708 * 16 14 11 19 19 H 1.48493 * 109.47553 * 89.99455 * 18 16 14 20 20 H 1.48500 * 109.47121 * 209.99926 * 18 16 14 21 21 H 1.48507 * 109.46971 * 329.99588 * 18 16 14 22 22 H 1.08992 * 109.47626 * 59.99897 * 1 2 3 23 23 H 1.09003 * 109.47042 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47001 * 299.99210 * 1 2 3 25 25 H 1.09001 * 109.47001 * 240.00790 * 2 1 3 26 26 H 1.08991 * 109.47284 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46810 * 300.01021 * 3 2 1 28 28 H 1.09001 * 109.46449 * 60.00452 * 3 2 1 29 29 H 1.08993 * 110.49298 * 134.92803 * 7 5 4 30 30 H 1.09002 * 110.48674 * 257.57538 * 7 5 4 31 31 H 1.09001 * 110.97084 * 217.08297 * 8 7 5 32 32 H 1.08998 * 110.97089 * 93.32621 * 8 7 5 33 33 H 1.09001 * 109.47009 * 68.52062 * 13 11 9 34 34 H 1.08997 * 109.47202 * 188.52520 * 13 11 9 35 35 H 1.09001 * 109.47040 * 308.52576 * 13 11 9 36 36 H 0.97003 * 120.00006 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7478 -0.3087 2.4561 6 8 1.0645 0.6458 2.7610 7 6 2.4199 -1.2423 3.4385 8 6 3.4721 -1.9926 2.5895 9 6 2.8657 -1.8889 1.1725 10 1 2.2650 -2.7712 0.9522 11 6 3.9760 -1.7317 0.1316 12 1 3.5347 -1.5041 -0.8387 13 6 4.9081 -0.5921 0.5481 14 6 4.7616 -3.0144 0.0377 15 1 4.4958 -3.8571 0.6587 16 6 5.8164 -3.1136 -0.8446 17 7 6.1404 -2.0872 -1.6004 18 14 6.7854 -4.7060 -0.9666 19 1 6.1679 -5.5840 -1.9927 20 1 8.1873 -4.4041 -1.3522 21 1 6.7714 -5.3960 0.3484 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8933 -0.5137 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6767 1.9563 0.8901 29 1 2.9049 -0.6753 4.2331 30 1 1.6963 -1.9427 3.8555 31 1 3.5559 -3.0333 2.9026 32 1 4.4399 -1.4934 2.6372 33 1 5.4632 -0.8842 1.4396 34 1 5.6063 -0.3796 -0.2614 35 1 4.3186 0.2992 0.7629 36 1 6.8823 -2.1572 -2.2214 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260587114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:31 Heat of formation + Delta-G solvation = -62.352390 kcal Electronic energy + Delta-G solvation = -16702.314756 eV Core-core repulsion = 14185.353225 eV Total energy + Delta-G solvation = -2516.961531 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.60912 -38.03419 -36.11716 -35.17937 -32.38807 -30.85464 -28.23980 -27.37928 -26.98115 -23.80717 -23.34535 -21.18729 -19.37887 -18.19370 -17.40883 -17.23646 -16.45687 -16.06946 -15.35979 -14.84328 -14.81203 -14.57968 -14.29524 -13.89830 -13.75832 -13.16228 -12.95926 -12.83974 -12.74420 -12.68635 -12.41817 -12.35822 -12.11535 -12.06230 -11.87216 -11.35323 -11.23818 -10.75963 -10.48140 -10.34188 -9.46306 -8.04755 -6.16648 1.45972 1.48577 1.56583 1.71478 2.22383 2.49789 3.25645 3.57017 3.83183 4.04072 4.13240 4.19164 4.28489 4.43595 4.64356 4.71913 4.75483 4.77784 4.85332 4.91095 4.93439 5.01790 5.16405 5.21245 5.23513 5.36896 5.41643 5.48310 5.66285 5.78502 5.92432 6.15832 6.34795 6.46464 6.94425 7.34765 7.51828 9.00945 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035972 B = 0.008737 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.202189 B = 3203.953822 C = 3553.786578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.141 3.859 3 C -0.158 4.158 4 N -0.600 5.600 5 C 0.506 3.494 6 O -0.582 6.582 7 C -0.147 4.147 8 C -0.115 4.115 9 C 0.138 3.862 10 H 0.070 0.930 11 C 0.046 3.954 12 H 0.001 0.999 13 C -0.120 4.120 14 C -0.519 4.519 15 H 0.065 0.935 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.950 3.050 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.263 1.263 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.024 0.976 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.435 0.348 5.185 8.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.039 3.961 3 C -0.216 4.216 4 N -0.332 5.332 5 C 0.295 3.705 6 O -0.464 6.464 7 C -0.186 4.186 8 C -0.152 4.152 9 C 0.035 3.965 10 H 0.088 0.912 11 C 0.027 3.973 12 H 0.019 0.981 13 C -0.178 4.178 14 C -0.558 4.558 15 H 0.083 0.917 16 C -0.185 4.185 17 N -0.558 5.558 18 Si 0.776 3.224 19 H -0.207 1.207 20 H -0.218 1.218 21 H -0.187 1.187 22 H 0.102 0.898 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.685 0.911 5.123 8.471 hybrid contribution 0.838 -0.644 -0.607 1.219 sum -5.847 0.266 4.516 7.392 Atomic orbital electron populations 1.22062 0.93858 1.02185 1.02936 1.20993 0.94728 0.93023 0.87346 1.22138 1.00925 0.95881 1.02682 1.48680 1.49721 1.28955 1.05801 1.21405 0.79715 0.84548 0.84805 1.90597 1.42363 1.31030 1.82394 1.22387 0.99581 0.98900 0.97766 1.22640 0.98317 1.02367 0.91901 1.21924 0.91173 0.85604 0.97798 0.91221 1.18782 0.91635 0.94535 0.92395 0.98097 1.21698 0.99495 0.96882 0.99710 1.21394 1.14139 0.98784 1.21459 0.91672 1.25669 0.98413 0.98897 0.95497 1.70058 1.29390 1.31415 1.24960 0.85682 0.77601 0.80441 0.78661 1.20677 1.21822 1.18674 0.89754 0.92509 0.92828 0.89977 0.93405 0.89948 0.92794 0.87484 0.86231 0.88257 0.90337 0.94703 0.93785 0.95750 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.20 71.98 0.66 -3.74 16 2 C 0.14 4.77 3.07 44.99 0.14 4.91 16 3 C -0.16 -5.21 9.08 71.98 0.65 -4.56 16 4 N -0.60 -21.23 2.04 -770.41 -1.57 -22.80 16 5 C 0.51 17.81 7.41 87.90 0.65 18.46 16 6 O -0.58 -23.41 15.12 -3.05 -0.05 -23.46 16 7 C -0.15 -4.04 6.86 30.59 0.21 -3.83 16 8 C -0.11 -3.56 6.11 31.65 0.19 -3.37 16 9 C 0.14 5.05 2.99 45.44 0.14 5.18 16 10 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 11 C 0.05 2.06 1.91 -11.54 -0.02 2.04 16 12 H 0.00 0.05 6.58 -2.39 -0.02 0.04 16 13 C -0.12 -5.48 8.15 71.98 0.59 -4.90 16 14 C -0.52 -25.64 8.15 25.60 0.21 -25.43 16 15 H 0.07 3.06 7.74 -2.91 -0.02 3.04 16 16 C 0.01 0.72 5.31 84.65 0.45 1.17 16 17 N -0.92 -50.80 11.43 21.45 0.25 -50.55 16 18 Si 0.95 41.15 29.54 68.60 2.03 43.17 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 1.71 6.77 -2.39 -0.02 1.69 16 25 H 0.08 2.95 6.51 -2.39 -0.02 2.93 16 26 H 0.05 1.72 6.02 -2.39 -0.01 1.71 16 27 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.05 1.89 6.80 -2.39 -0.02 1.87 16 29 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.08 2.67 5.46 -2.39 -0.01 2.65 16 33 H 0.03 1.53 6.24 -2.39 -0.01 1.51 16 34 H 0.04 2.27 6.36 -2.39 -0.02 2.26 16 35 H 0.02 1.02 5.29 -2.39 -0.01 1.01 16 36 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -58.79 276.76 5.58 -53.21 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.06 Total: 14.49 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 3.87 Total: -14.07 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -1.33 Total: -73.35 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -58.79 5.58 -53.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.138 kcal (2) G-P(sol) polarization free energy of solvation -58.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds