Wall clock time and date at job start Mon Mar 30 2020 03:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42906 * 109.46798 * 2 1 4 4 C 1.42907 * 113.99523 * 183.81757 * 3 2 1 5 5 C 1.50697 * 110.27600 * 302.36456 * 4 3 2 6 6 H 1.07998 * 119.99384 * 124.69584 * 5 4 3 7 7 C 1.37876 * 120.00233 * 304.69578 * 5 4 3 8 8 N 1.31506 * 120.00029 * 353.79448 * 7 5 4 9 9 Si 1.86795 * 119.99867 * 173.79055 * 7 5 4 10 10 H 1.48504 * 109.47428 * 60.00166 * 9 7 5 11 11 H 1.48504 * 109.47245 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47540 * 300.00170 * 9 7 5 13 13 C 1.54594 * 110.30360 * 180.16956 * 4 3 2 14 14 C 1.54936 * 102.92390 * 263.04116 * 13 4 3 15 15 N 1.48535 * 103.22907 * 322.59185 * 14 13 4 16 16 C 1.46898 * 111.00195 * 159.71852 * 15 14 13 17 17 C 1.53006 * 117.49788 * 3.74860 * 16 15 14 18 18 C 1.53000 * 117.49816 * 295.12433 * 16 15 14 19 19 C 1.47900 * 105.81682 * 39.20256 * 15 14 13 20 20 H 1.09001 * 109.47418 * 300.00156 * 1 2 3 21 21 H 1.09004 * 109.47497 * 60.00095 * 1 2 3 22 22 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47362 * 240.00211 * 2 1 3 24 24 H 1.08999 * 109.46886 * 119.99588 * 2 1 3 25 25 H 0.96998 * 120.00269 * 179.97438 * 8 7 5 26 26 H 1.09005 * 110.72101 * 144.68471 * 13 4 3 27 27 H 1.08997 * 110.72631 * 21.40708 * 13 4 3 28 28 H 1.08998 * 110.67239 * 204.15085 * 14 13 4 29 29 H 1.09003 * 110.66559 * 81.02496 * 14 13 4 30 30 H 1.09001 * 115.54938 * 149.45413 * 16 15 14 31 31 H 1.09002 * 117.49499 * 359.97438 * 17 16 15 32 32 H 1.08997 * 117.49903 * 145.02104 * 17 16 15 33 33 H 1.08995 * 117.49749 * 214.97739 * 18 16 15 34 34 H 1.08997 * 117.49867 * 0.02562 * 18 16 15 35 35 H 1.09001 * 109.91895 * 94.02657 * 19 15 14 36 36 H 1.09006 * 109.91331 * 215.31535 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4281 1.4611 -0.0869 5 6 4.0817 0.7221 1.0522 6 1 4.8202 -0.0392 0.8487 7 6 3.7370 1.0179 2.3540 8 7 2.9310 2.0254 2.6080 9 14 4.4148 -0.0126 3.7568 10 1 5.8981 0.0605 3.7530 11 1 3.8965 0.5066 5.0479 12 1 3.9885 -1.4247 3.5848 13 6 3.8489 2.9487 -0.0760 14 6 4.0244 3.2702 -1.5814 15 7 4.6160 2.0224 -2.1288 16 6 4.4190 1.9399 -3.5821 17 6 3.7539 3.1316 -4.2738 18 6 2.9822 1.8226 -4.0948 19 6 3.9266 0.9121 -1.4365 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 2.6881 2.2333 3.5238 26 1 4.7898 3.0794 0.4586 27 1 3.0660 3.5678 0.3620 28 1 4.7046 4.1108 -1.7186 29 1 3.0599 3.4747 -2.0462 30 1 5.1947 1.4070 -4.1321 31 1 3.4621 3.9767 -3.6502 32 1 4.0921 3.3831 -5.2790 33 1 2.8128 1.2129 -4.9823 34 1 2.1832 1.8071 -3.3537 35 1 3.0811 0.5701 -2.0334 36 1 4.6226 0.0901 -1.2687 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260593537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:52 Heat of formation + Delta-G solvation = -7.304757 kcal Electronic energy + Delta-G solvation = -16761.044740 eV Core-core repulsion = 14246.470253 eV Total energy + Delta-G solvation = -2514.574486 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24861 -36.72545 -34.00318 -32.32631 -30.15978 -28.58252 -27.74172 -24.57369 -22.56988 -22.05881 -21.33883 -19.25313 -18.97092 -16.98198 -16.23128 -15.16786 -14.62734 -14.31903 -14.07162 -13.80510 -13.00006 -12.73759 -12.37866 -12.03234 -11.74534 -11.46766 -11.33785 -11.23914 -10.92583 -10.68709 -10.52036 -10.47252 -10.31232 -10.12464 -9.95731 -9.79507 -9.45504 -8.90302 -8.41235 -7.91697 -7.63613 -5.99229 -4.11772 3.30390 3.35578 3.38329 4.03758 4.40717 4.62498 5.10350 5.15407 5.20070 5.22725 5.38473 5.78720 5.86144 5.94476 5.99100 6.03605 6.12508 6.21997 6.26601 6.34061 6.44924 6.48854 6.52559 6.56493 6.85065 6.90739 7.09408 7.17910 7.24053 7.55751 7.77024 7.82411 7.86454 8.20553 8.82427 9.08253 9.58887 11.04802 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.009991 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.087038 B = 2801.889846 C = 3239.173636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 O -0.373 6.373 4 C 0.235 3.765 5 C -0.550 4.550 6 H 0.057 0.943 7 C 0.083 3.917 8 N -0.855 5.855 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.079 4.079 14 C 0.023 3.977 15 N -0.483 5.483 16 C 0.017 3.983 17 C -0.192 4.192 18 C -0.215 4.215 19 C 0.016 3.984 20 H 0.057 0.943 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.020 0.980 24 H 0.050 0.950 25 H 0.260 0.740 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -0.264 -8.495 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.002 4.002 3 O -0.293 6.293 4 C 0.197 3.803 5 C -0.588 4.588 6 H 0.076 0.924 7 C -0.123 4.123 8 N -0.490 5.490 9 Si 0.710 3.290 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.117 4.117 14 C -0.104 4.104 15 N -0.206 5.206 16 C -0.093 4.093 17 C -0.229 4.229 18 C -0.254 4.254 19 C -0.112 4.112 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.740 -0.012 -8.237 8.270 hybrid contribution -0.372 -0.828 0.544 1.058 sum -1.112 -0.840 -7.693 7.818 Atomic orbital electron populations 1.21720 0.96545 1.00245 1.01787 1.21883 0.92302 0.87034 0.99017 1.87847 1.23459 1.23649 1.94317 1.19693 0.78643 0.92670 0.89336 1.21357 1.24671 1.22046 0.90676 0.92433 1.24951 0.94391 0.94502 0.98488 1.70043 1.33240 1.26086 1.19646 0.86822 0.79520 0.80922 0.81714 1.20130 1.21272 1.20251 1.22262 1.01354 0.96957 0.91122 1.23497 0.96708 0.92467 0.97745 1.64803 1.52404 1.03456 0.99970 1.23084 0.94045 1.01412 0.90732 1.23335 1.04821 0.93099 1.01665 1.23362 0.97551 1.00836 1.03656 1.23749 0.96460 0.94030 0.96930 0.92394 0.93461 0.92889 0.96203 0.93154 0.93043 0.90920 0.90936 0.91504 0.94178 0.86573 0.88018 0.89052 0.89169 0.88486 0.94255 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.28 37.15 0.38 -2.29 16 2 C 0.07 1.66 6.01 37.15 0.22 1.88 16 3 O -0.37 -9.38 9.30 -35.23 -0.33 -9.71 16 4 C 0.24 5.79 0.57 -90.42 -0.05 5.73 16 5 C -0.55 -14.72 6.67 -34.44 -0.23 -14.95 16 6 H 0.06 1.55 7.36 -52.49 -0.39 1.17 16 7 C 0.08 2.24 5.14 -17.82 -0.09 2.15 16 8 N -0.85 -23.92 12.14 55.43 0.67 -23.25 16 9 Si 0.88 20.92 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C -0.08 -1.86 5.51 -24.87 -0.14 -2.00 16 14 C 0.02 0.46 5.27 -1.90 -0.01 0.45 16 15 N -0.48 -9.64 5.54 -222.50 -1.23 -10.87 16 16 C 0.02 0.28 6.43 -67.71 -0.44 -0.15 16 17 C -0.19 -2.73 9.51 -26.72 -0.25 -2.99 16 18 C -0.22 -3.26 8.89 -26.73 -0.24 -3.50 16 19 C 0.02 0.34 5.38 -2.76 -0.01 0.33 16 20 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.02 0.41 6.61 -51.93 -0.34 0.07 16 24 H 0.05 1.22 7.15 -51.93 -0.37 0.84 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.07 1.82 7.86 -51.93 -0.41 1.41 16 27 H 0.07 1.83 8.05 -51.93 -0.42 1.41 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.04 0.78 5.82 -51.93 -0.30 0.48 16 30 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.10 1.51 5.84 -51.93 -0.30 1.20 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.68 7.16 -51.93 -0.37 1.31 16 35 H 0.04 0.83 4.83 -51.93 -0.25 0.58 16 36 H 0.07 1.63 7.39 -51.93 -0.38 1.25 16 LS Contribution 280.85 15.07 4.23 4.23 Total: -1.00 -28.08 280.85 -8.17 -36.24 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.63 Total: 2.81 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -0.86 Total: -15.35 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: -0.56 Total: -34.12 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.33 Total: -9.71 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.08 -8.17 -36.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.937 kcal (2) G-P(sol) polarization free energy of solvation -28.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds