Wall clock time and date at job start Mon Mar 30 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42906 * 109.46798 * 2 1 4 4 C 1.42907 * 113.99523 * 183.81757 * 3 2 1 5 5 C 1.50697 * 110.27600 * 302.36456 * 4 3 2 6 6 H 1.07998 * 119.99384 * 124.69584 * 5 4 3 7 7 C 1.37876 * 120.00233 * 304.69578 * 5 4 3 8 8 N 1.31506 * 120.00029 * 353.79448 * 7 5 4 9 9 Si 1.86795 * 119.99867 * 173.79055 * 7 5 4 10 10 H 1.48504 * 109.47428 * 60.00166 * 9 7 5 11 11 H 1.48504 * 109.47245 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47540 * 300.00170 * 9 7 5 13 13 C 1.54594 * 110.30360 * 180.16956 * 4 3 2 14 14 C 1.54936 * 102.92390 * 263.04116 * 13 4 3 15 15 N 1.48535 * 103.22907 * 322.59185 * 14 13 4 16 16 C 1.46898 * 111.00195 * 159.71852 * 15 14 13 17 17 C 1.53006 * 117.49788 * 3.74860 * 16 15 14 18 18 C 1.53000 * 117.49816 * 295.12433 * 16 15 14 19 19 C 1.47900 * 105.81682 * 39.20256 * 15 14 13 20 20 H 1.09001 * 109.47418 * 300.00156 * 1 2 3 21 21 H 1.09004 * 109.47497 * 60.00095 * 1 2 3 22 22 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47362 * 240.00211 * 2 1 3 24 24 H 1.08999 * 109.46886 * 119.99588 * 2 1 3 25 25 H 0.96998 * 120.00269 * 179.97438 * 8 7 5 26 26 H 1.09005 * 110.72101 * 144.68471 * 13 4 3 27 27 H 1.08997 * 110.72631 * 21.40708 * 13 4 3 28 28 H 1.08998 * 110.67239 * 204.15085 * 14 13 4 29 29 H 1.09003 * 110.66559 * 81.02496 * 14 13 4 30 30 H 1.09001 * 115.54938 * 149.45413 * 16 15 14 31 31 H 1.09002 * 117.49499 * 359.97438 * 17 16 15 32 32 H 1.08997 * 117.49903 * 145.02104 * 17 16 15 33 33 H 1.08995 * 117.49749 * 214.97739 * 18 16 15 34 34 H 1.08997 * 117.49867 * 0.02562 * 18 16 15 35 35 H 1.09001 * 109.91895 * 94.02657 * 19 15 14 36 36 H 1.09006 * 109.91331 * 215.31535 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4281 1.4611 -0.0869 5 6 4.0817 0.7221 1.0522 6 1 4.8202 -0.0392 0.8487 7 6 3.7370 1.0179 2.3540 8 7 2.9310 2.0254 2.6080 9 14 4.4148 -0.0126 3.7568 10 1 5.8981 0.0605 3.7530 11 1 3.8965 0.5066 5.0479 12 1 3.9885 -1.4247 3.5848 13 6 3.8489 2.9487 -0.0760 14 6 4.0244 3.2702 -1.5814 15 7 4.6160 2.0224 -2.1288 16 6 4.4190 1.9399 -3.5821 17 6 3.7539 3.1316 -4.2738 18 6 2.9822 1.8226 -4.0948 19 6 3.9266 0.9121 -1.4365 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 2.6881 2.2333 3.5238 26 1 4.7898 3.0794 0.4586 27 1 3.0660 3.5678 0.3620 28 1 4.7046 4.1108 -1.7186 29 1 3.0599 3.4747 -2.0462 30 1 5.1947 1.4070 -4.1321 31 1 3.4621 3.9767 -3.6502 32 1 4.0921 3.3831 -5.2790 33 1 2.8128 1.2129 -4.9823 34 1 2.1832 1.8071 -3.3537 35 1 3.0811 0.5701 -2.0334 36 1 4.6226 0.0901 -1.2687 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260593537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:51 Heat of formation + Delta-G solvation = -25.497979 kcal Electronic energy + Delta-G solvation = -16761.833657 eV Core-core repulsion = 14246.470253 eV Total energy + Delta-G solvation = -2515.363404 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82907 -38.38519 -35.61357 -34.32197 -31.82056 -30.27577 -29.57913 -26.50677 -24.13118 -23.34329 -22.92895 -21.04484 -20.52465 -18.93474 -17.74820 -16.69738 -16.55247 -16.01390 -15.90221 -15.33292 -14.74779 -14.42538 -14.01924 -13.65246 -13.31185 -13.07321 -13.01102 -12.83214 -12.65941 -12.46980 -12.30790 -12.19556 -11.98269 -11.72781 -11.51680 -11.42326 -10.94277 -10.87532 -10.44112 -9.77819 -9.22517 -8.06362 -6.24657 1.40004 1.40695 1.47731 2.41450 2.80421 3.08622 3.22122 3.55131 3.81436 4.01133 4.02415 4.22137 4.32548 4.36124 4.48397 4.61193 4.62685 4.71743 4.77601 4.83382 4.87592 4.99191 5.06360 5.19374 5.21854 5.27631 5.32980 5.37739 5.38616 5.70537 5.72547 6.06410 6.18806 6.27476 6.77040 7.14872 7.50642 8.96449 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.009991 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.087038 B = 2801.889846 C = 3239.173636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.072 3.928 3 O -0.393 6.393 4 C 0.224 3.776 5 C -0.562 4.562 6 H 0.048 0.952 7 C 0.042 3.958 8 N -0.882 5.882 9 Si 0.938 3.062 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C -0.077 4.077 14 C 0.038 3.962 15 N -0.494 5.494 16 C -0.006 4.006 17 C -0.173 4.173 18 C -0.211 4.211 19 C 0.029 3.971 20 H 0.043 0.957 21 H 0.059 0.941 22 H 0.085 0.915 23 H 0.031 0.969 24 H 0.022 0.978 25 H 0.258 0.742 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -0.602 -10.205 10.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.006 4.006 3 O -0.312 6.312 4 C 0.185 3.815 5 C -0.600 4.600 6 H 0.066 0.934 7 C -0.162 4.162 8 N -0.518 5.518 9 Si 0.764 3.236 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C -0.115 4.115 14 C -0.089 4.089 15 N -0.217 5.217 16 C -0.115 4.115 17 C -0.210 4.210 18 C -0.250 4.250 19 C -0.099 4.099 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.151 0.849 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.795 -0.356 -9.958 9.996 hybrid contribution -0.350 -0.733 1.039 1.319 sum -1.145 -1.089 -8.919 9.058 Atomic orbital electron populations 1.21677 0.93573 1.02391 1.01694 1.22025 0.94718 0.85659 0.98149 1.87809 1.23575 1.25414 1.94449 1.19782 0.78578 0.92934 0.90195 1.21619 1.24565 1.21911 0.91938 0.93408 1.25573 0.94715 0.95366 1.00543 1.70159 1.34449 1.27302 1.19855 0.85937 0.78924 0.79620 0.79107 1.19808 1.20921 1.19782 1.22089 0.99225 0.96480 0.93716 1.23353 0.97610 0.93197 0.94737 1.64726 1.52225 1.02423 1.02370 1.23237 0.95546 1.04111 0.88572 1.23420 1.02809 0.92022 1.02717 1.23339 0.95707 1.02146 1.03802 1.23461 0.96283 0.94285 0.95851 0.93769 0.92190 0.89638 0.95067 0.95966 0.93246 0.93194 0.93300 0.89537 0.93591 0.84879 0.88676 0.85888 0.86648 0.90913 0.93678 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 10.28 71.98 0.74 -4.09 16 2 C 0.07 3.16 6.01 71.98 0.43 3.59 16 3 O -0.39 -20.03 9.30 -148.98 -1.39 -21.42 16 4 C 0.22 11.21 0.57 -10.66 -0.01 11.20 16 5 C -0.56 -30.84 6.67 25.60 0.17 -30.67 16 6 H 0.05 2.64 7.36 -2.91 -0.02 2.62 16 7 C 0.04 2.29 5.14 84.66 0.43 2.72 16 8 N -0.88 -50.57 12.14 21.45 0.26 -50.31 16 9 Si 0.94 43.52 29.54 68.60 2.03 45.55 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 C -0.08 -3.72 5.51 31.80 0.18 -3.55 16 14 C 0.04 1.50 5.27 86.65 0.46 1.95 16 15 N -0.49 -19.16 5.54 -857.84 -4.75 -23.91 16 16 C -0.01 -0.17 6.43 44.92 0.29 0.12 16 17 C -0.17 -4.30 9.51 30.60 0.29 -4.01 16 18 C -0.21 -5.80 8.89 30.60 0.27 -5.53 16 19 C 0.03 1.26 5.38 86.45 0.46 1.73 16 20 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 22 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.03 1.29 6.61 -2.39 -0.02 1.27 16 24 H 0.02 1.09 7.15 -2.39 -0.02 1.07 16 25 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.05 2.58 7.86 -2.38 -0.02 2.56 16 27 H 0.05 2.55 8.05 -2.39 -0.02 2.53 16 28 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.05 1.74 5.82 -2.39 -0.01 1.73 16 30 H 0.13 3.57 8.14 -2.39 -0.02 3.55 16 31 H 0.09 2.53 5.84 -2.39 -0.01 2.51 16 32 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.07 2.39 7.16 -2.39 -0.02 2.37 16 35 H 0.05 1.88 4.83 -2.39 -0.01 1.87 16 36 H 0.06 2.70 7.39 -2.38 -0.02 2.68 16 Total: -1.00 -60.97 280.85 0.92 -60.05 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.05 Total: 16.55 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.72 Total: -26.52 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -4.49 Total: -74.22 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.39 Total: -21.42 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -60.97 0.92 -60.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260593537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.557 kcal (2) G-P(sol) polarization free energy of solvation -60.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds