Wall clock time and date at job start Mon Mar 30 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47044 * 2 1 4 4 C 1.46764 * 124.34707 * 269.99719 * 3 2 1 5 5 C 1.54480 * 105.47241 * 197.03818 * 4 3 2 6 6 H 1.08997 * 110.97191 * 92.70203 * 5 4 3 7 7 C 1.53003 * 110.96951 * 216.46322 * 5 4 3 8 8 H 1.09005 * 109.47010 * 59.99968 * 7 5 4 9 9 C 1.52997 * 109.47074 * 300.00199 * 7 5 4 10 10 C 1.52999 * 109.47138 * 179.97438 * 7 5 4 11 11 C 1.50699 * 109.46775 * 184.99802 * 10 7 5 12 12 H 1.07997 * 120.00362 * 0.02562 * 11 10 7 13 13 C 1.37878 * 119.99814 * 179.97438 * 11 10 7 14 14 N 1.31514 * 119.99995 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00188 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46649 * 60.00543 * 15 13 11 17 17 H 1.48499 * 109.47062 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47312 * 300.00487 * 15 13 11 19 19 C 1.54784 * 101.69261 * 334.38904 * 5 4 3 20 20 C 1.34420 * 124.35242 * 90.02020 * 3 2 1 21 21 O 1.21283 * 124.93917 * 359.53285 * 20 3 2 22 22 H 1.08997 * 109.47234 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47350 * 300.00581 * 1 2 3 24 24 H 1.09006 * 109.46532 * 60.00703 * 1 2 3 25 25 H 1.08993 * 109.47350 * 239.99419 * 2 1 3 26 26 H 1.08998 * 109.46759 * 119.99404 * 2 1 3 27 27 H 1.09003 * 110.24343 * 316.03631 * 4 3 2 28 28 H 1.09001 * 110.24815 * 78.03591 * 4 3 2 29 29 H 1.08996 * 109.47540 * 59.99914 * 9 7 5 30 30 H 1.09002 * 109.46916 * 179.97438 * 9 7 5 31 31 H 1.08995 * 109.47088 * 299.99704 * 9 7 5 32 32 H 1.09000 * 109.47090 * 305.00022 * 10 7 5 33 33 H 1.08998 * 109.46872 * 65.00344 * 10 7 5 34 34 H 0.97002 * 120.00228 * 179.97438 * 14 13 11 35 35 H 1.08996 * 110.61291 * 266.40068 * 19 5 4 36 36 H 1.09001 * 110.42713 * 143.71017 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 -1.2117 5 6 3.1749 3.3438 -0.7488 6 1 4.2335 3.1027 -0.8450 7 6 2.8330 4.6178 -1.5241 8 1 1.7869 4.8748 -1.3576 9 6 3.0694 4.3849 -3.0176 10 6 3.7227 5.7642 -1.0390 11 6 3.3038 7.0450 -1.7136 12 1 2.4847 7.0418 -2.4175 13 6 3.9656 8.2212 -1.4313 14 7 4.9627 8.2252 -0.5738 15 14 3.4460 9.8091 -2.2669 16 1 2.0300 10.1046 -1.9310 17 1 4.3095 10.9217 -1.7962 18 1 3.5856 9.6630 -3.7381 19 6 2.7648 3.4771 0.7377 20 6 2.2715 2.0962 1.1098 21 8 2.1213 1.6945 2.2442 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.8321 1.5529 -1.9384 28 1 1.3638 2.5310 -1.6429 29 1 2.4354 3.5683 -3.3629 30 1 2.8255 5.2924 -3.5699 31 1 4.1155 4.1280 -3.1842 32 1 3.6202 5.8718 0.0408 33 1 4.7619 5.5468 -1.2855 34 1 5.4286 9.0526 -0.3755 35 1 1.9668 4.2108 0.8513 36 1 3.6261 3.7515 1.3468 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260675109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:24 Heat of formation + Delta-G solvation = -61.066709 kcal Electronic energy + Delta-G solvation = -15805.150775 eV Core-core repulsion = 13288.244996 eV Total energy + Delta-G solvation = -2516.905779 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27921 -36.85212 -35.29869 -33.07223 -31.69940 -28.98287 -27.77158 -26.19881 -24.21824 -23.00070 -21.48930 -19.23220 -19.00274 -16.65818 -16.16433 -16.11060 -15.16326 -14.52865 -14.06523 -13.70148 -13.45322 -13.28312 -13.13202 -12.60923 -12.35742 -12.19741 -11.96755 -11.67268 -11.29048 -11.10793 -11.00651 -10.91423 -10.81133 -10.39855 -10.28790 -9.81218 -9.43704 -9.16746 -9.00010 -8.60799 -8.35063 -6.00173 -4.02014 2.83178 3.14851 3.32439 3.37747 3.39364 4.44850 4.63091 4.79718 5.05297 5.06976 5.17498 5.26974 5.35922 5.37812 5.55796 5.68133 5.77996 5.83359 5.91653 6.05336 6.07288 6.18059 6.27328 6.37923 6.51990 6.68584 6.89386 7.01738 7.10070 7.27071 7.65901 7.79407 7.99088 8.39388 8.41525 9.04120 9.61799 11.11021 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.046135 B = 0.005835 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.767859 B = 4797.363230 C = 5084.052913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 N -0.624 5.624 4 C 0.106 3.894 5 C -0.091 4.091 6 H 0.086 0.914 7 C -0.076 4.076 8 H 0.061 0.939 9 C -0.135 4.135 10 C 0.027 3.973 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.146 4.146 20 C 0.518 3.482 21 O -0.545 6.545 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.107 0.893 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 -13.427 -2.799 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.358 5.358 4 C -0.016 4.016 5 C -0.110 4.110 6 H 0.104 0.896 7 C -0.094 4.094 8 H 0.079 0.921 9 C -0.192 4.192 10 C -0.010 4.010 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.186 4.186 20 C 0.307 3.693 21 O -0.423 6.423 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.606 -13.606 -2.125 14.868 hybrid contribution -0.235 0.958 -0.531 1.120 sum -5.841 -12.648 -2.656 14.183 Atomic orbital electron populations 1.22159 0.96049 1.01979 1.02553 1.21280 0.94250 0.81836 1.02706 1.48436 1.65964 1.13488 1.07923 1.22299 0.99823 0.92878 0.86633 1.22348 0.99557 0.95331 0.93797 0.89587 1.21252 1.00898 0.93316 0.93978 0.92088 1.21750 1.00253 1.00607 0.96626 1.19148 0.94300 0.91016 0.96540 1.21190 1.16538 0.92903 1.24943 0.92668 1.25002 0.95110 0.98995 0.95258 1.69947 1.21898 1.27379 1.34210 0.86714 0.78506 0.83253 0.79848 1.20312 1.21368 1.20316 1.22449 1.03820 0.94308 0.98055 1.21234 0.75985 0.88055 0.84051 1.90667 1.54350 1.75855 1.21388 0.91727 0.92269 0.92381 0.90656 0.90380 0.90899 0.91115 0.94910 0.91741 0.93462 0.96265 0.96507 0.92980 0.87458 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.12 1.34 6.65 -4.04 -0.03 1.31 16 3 N -0.62 -8.53 2.93 -172.41 -0.51 -9.04 16 4 C 0.11 1.34 5.84 -3.12 -0.02 1.32 16 5 C -0.09 -1.39 2.69 -88.90 -0.24 -1.63 16 6 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 7 C -0.08 -1.37 1.69 -90.62 -0.15 -1.52 16 8 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 9 C -0.14 -2.23 8.78 37.16 0.33 -1.91 16 10 C 0.03 0.64 4.38 -27.88 -0.12 0.52 16 11 C -0.52 -13.79 8.41 -34.44 -0.29 -14.08 16 12 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.15 -2.37 5.56 -26.66 -0.15 -2.52 16 20 C 0.52 8.65 8.02 -10.86 -0.09 8.57 16 21 O -0.54 -10.86 17.60 5.55 0.10 -10.76 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.86 7.70 -51.93 -0.40 0.46 16 29 H 0.03 0.44 7.17 -51.93 -0.37 0.06 16 30 H 0.06 1.18 6.95 -51.93 -0.36 0.82 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.02 0.49 7.41 -51.93 -0.38 0.10 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.11 1.77 7.84 -51.93 -0.41 1.37 16 36 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 294.08 15.07 4.43 4.43 Total: -1.00 -30.71 294.08 -6.80 -37.51 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -6.06 Total: -3.01 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.48 Total: -9.76 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.23 Total: -34.53 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.10 Total: -10.76 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.71 -6.80 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260675109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.560 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds