Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47044 * 2 1 4 4 C 1.46764 * 124.34707 * 269.99719 * 3 2 1 5 5 C 1.54480 * 105.47241 * 197.03818 * 4 3 2 6 6 H 1.08997 * 110.97191 * 92.70203 * 5 4 3 7 7 C 1.53003 * 110.96951 * 216.46322 * 5 4 3 8 8 H 1.09005 * 109.47010 * 59.99968 * 7 5 4 9 9 C 1.52997 * 109.47074 * 300.00199 * 7 5 4 10 10 C 1.52999 * 109.47138 * 179.97438 * 7 5 4 11 11 C 1.50699 * 109.46775 * 184.99802 * 10 7 5 12 12 H 1.07997 * 120.00362 * 0.02562 * 11 10 7 13 13 C 1.37878 * 119.99814 * 179.97438 * 11 10 7 14 14 N 1.31514 * 119.99995 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00188 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46649 * 60.00543 * 15 13 11 17 17 H 1.48499 * 109.47062 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47312 * 300.00487 * 15 13 11 19 19 C 1.54784 * 101.69261 * 334.38904 * 5 4 3 20 20 C 1.34420 * 124.35242 * 90.02020 * 3 2 1 21 21 O 1.21283 * 124.93917 * 359.53285 * 20 3 2 22 22 H 1.08997 * 109.47234 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47350 * 300.00581 * 1 2 3 24 24 H 1.09006 * 109.46532 * 60.00703 * 1 2 3 25 25 H 1.08993 * 109.47350 * 239.99419 * 2 1 3 26 26 H 1.08998 * 109.46759 * 119.99404 * 2 1 3 27 27 H 1.09003 * 110.24343 * 316.03631 * 4 3 2 28 28 H 1.09001 * 110.24815 * 78.03591 * 4 3 2 29 29 H 1.08996 * 109.47540 * 59.99914 * 9 7 5 30 30 H 1.09002 * 109.46916 * 179.97438 * 9 7 5 31 31 H 1.08995 * 109.47088 * 299.99704 * 9 7 5 32 32 H 1.09000 * 109.47090 * 305.00022 * 10 7 5 33 33 H 1.08998 * 109.46872 * 65.00344 * 10 7 5 34 34 H 0.97002 * 120.00228 * 179.97438 * 14 13 11 35 35 H 1.08996 * 110.61291 * 266.40068 * 19 5 4 36 36 H 1.09001 * 110.42713 * 143.71017 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 -1.2117 5 6 3.1749 3.3438 -0.7488 6 1 4.2335 3.1027 -0.8450 7 6 2.8330 4.6178 -1.5241 8 1 1.7869 4.8748 -1.3576 9 6 3.0694 4.3849 -3.0176 10 6 3.7227 5.7642 -1.0390 11 6 3.3038 7.0450 -1.7136 12 1 2.4847 7.0418 -2.4175 13 6 3.9656 8.2212 -1.4313 14 7 4.9627 8.2252 -0.5738 15 14 3.4460 9.8091 -2.2669 16 1 2.0300 10.1046 -1.9310 17 1 4.3095 10.9217 -1.7962 18 1 3.5856 9.6630 -3.7381 19 6 2.7648 3.4771 0.7377 20 6 2.2715 2.0962 1.1098 21 8 2.1213 1.6945 2.2442 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.8321 1.5529 -1.9384 28 1 1.3638 2.5310 -1.6429 29 1 2.4354 3.5683 -3.3629 30 1 2.8255 5.2924 -3.5699 31 1 4.1155 4.1280 -3.1842 32 1 3.6202 5.8718 0.0408 33 1 4.7619 5.5468 -1.2855 34 1 5.4286 9.0526 -0.3755 35 1 1.9668 4.2108 0.8513 36 1 3.6261 3.7515 1.3468 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260675109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = -79.389952 kcal Electronic energy + Delta-G solvation = -15805.945331 eV Core-core repulsion = 13288.244996 eV Total energy + Delta-G solvation = -2517.700335 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.52123 -38.27712 -36.62223 -34.76596 -33.19238 -30.12417 -29.40787 -27.59918 -25.77037 -24.16762 -22.95164 -20.66637 -20.22344 -18.45002 -17.57960 -17.38115 -16.46994 -16.34705 -15.27582 -14.99742 -14.68630 -14.48652 -14.46686 -14.09952 -13.97505 -13.35204 -13.23414 -12.92979 -12.82863 -12.70369 -12.39738 -12.36565 -12.16531 -11.97304 -11.84106 -11.43382 -11.01294 -10.83553 -10.69903 -10.46772 -9.71241 -8.12559 -6.20759 1.43423 1.44974 1.51855 1.52415 2.07653 2.45624 3.21739 3.44513 3.59598 3.86236 4.10487 4.17739 4.29264 4.50719 4.51156 4.63829 4.65207 4.72851 4.76056 4.86148 4.94266 4.99027 5.02745 5.22204 5.28820 5.37377 5.47054 5.58813 5.63889 5.67821 5.90911 5.96319 6.08856 6.35196 6.96936 7.13756 7.47531 8.98895 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.046135 B = 0.005835 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.767859 B = 4797.363230 C = 5084.052913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.614 5.614 4 C 0.113 3.887 5 C -0.085 4.085 6 H 0.086 0.914 7 C -0.065 4.065 8 H 0.061 0.939 9 C -0.130 4.130 10 C 0.030 3.970 11 C -0.527 4.527 12 H 0.063 0.937 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.148 4.148 20 C 0.514 3.486 21 O -0.586 6.586 22 H 0.088 0.912 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.045 0.955 32 H -0.008 1.008 33 H -0.009 1.009 34 H 0.260 0.740 35 H 0.099 0.901 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 -14.747 -5.068 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.347 5.347 4 C -0.009 4.009 5 C -0.104 4.104 6 H 0.105 0.895 7 C -0.084 4.084 8 H 0.079 0.921 9 C -0.187 4.187 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.081 0.919 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.780 3.220 16 H -0.195 1.195 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.189 4.189 20 C 0.303 3.697 21 O -0.467 6.467 22 H 0.107 0.893 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.129 0.871 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.881 -14.949 -4.443 17.046 hybrid contribution 0.161 1.341 0.178 1.363 sum -6.720 -13.608 -4.264 15.764 Atomic orbital electron populations 1.22118 0.95131 1.03334 1.01611 1.21578 0.94986 0.80171 1.03943 1.48533 1.64541 1.14397 1.07215 1.22364 1.00205 0.91913 0.86424 1.22189 1.00349 0.95388 0.92444 0.89533 1.21038 0.99276 0.92439 0.95623 0.92107 1.21692 1.01183 1.01230 0.94625 1.19059 0.94091 0.92791 0.94806 1.21674 1.16238 0.94019 1.24593 0.91875 1.25890 0.95224 1.02726 0.96005 1.70092 1.23398 1.28149 1.36038 0.85656 0.78229 0.78913 0.79191 1.19467 1.21527 1.19112 1.22402 1.03057 0.94426 0.98969 1.21210 0.76028 0.88266 0.84238 1.90639 1.56399 1.76577 1.23075 0.89304 0.94929 0.91504 0.87061 0.91504 0.87486 0.89591 0.90653 0.93781 0.93547 0.98993 0.99085 0.93154 0.88263 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 10.24 71.98 0.74 -2.08 16 2 C 0.11 2.17 6.65 86.38 0.57 2.74 16 3 N -0.61 -15.32 2.93 -817.98 -2.40 -17.72 16 4 C 0.11 2.40 5.84 86.83 0.51 2.91 16 5 C -0.08 -2.46 2.69 -9.68 -0.03 -2.49 16 6 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 7 C -0.06 -2.28 1.69 -10.79 -0.02 -2.30 16 8 H 0.06 2.14 8.05 -2.38 -0.02 2.12 16 9 C -0.13 -3.96 8.78 71.98 0.63 -3.32 16 10 C 0.03 1.44 4.38 29.85 0.13 1.57 16 11 C -0.53 -28.29 8.41 25.60 0.22 -28.07 16 12 H 0.06 3.22 7.06 -2.91 -0.02 3.19 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.94 -56.26 13.29 21.45 0.28 -55.97 16 15 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 C -0.15 -4.89 5.56 30.64 0.17 -4.72 16 20 C 0.51 17.05 8.02 87.90 0.70 17.75 16 21 O -0.59 -23.81 17.60 -3.04 -0.05 -23.86 16 22 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.45 7.93 -2.39 -0.02 1.43 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.67 7.70 -2.39 -0.02 1.65 16 29 H 0.07 1.66 7.17 -2.39 -0.02 1.64 16 30 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H -0.01 -0.45 7.41 -2.39 -0.02 -0.46 16 33 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.10 3.39 7.84 -2.39 -0.02 3.38 16 36 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -68.26 294.08 4.98 -63.29 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.03 Total: 6.43 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 4.09 Total: -17.63 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -2.11 Total: -73.69 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -68.26 4.98 -63.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260675109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.102 kcal (2) G-P(sol) polarization free energy of solvation -68.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds