Wall clock time and date at job start Mon Mar 30 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99683 * 2 1 4 4 C 1.50706 * 109.51983 * 59.44318 * 3 2 1 5 5 H 1.07999 * 119.99830 * 235.19252 * 4 3 2 6 6 C 1.37878 * 120.00026 * 55.19777 * 4 3 2 7 7 N 1.31513 * 119.99945 * 354.48048 * 6 4 3 8 8 Si 1.86800 * 119.99927 * 174.48334 * 6 4 3 9 9 H 1.48502 * 109.46779 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46812 * 119.99595 * 8 6 4 11 11 H 1.48492 * 109.47285 * 239.99665 * 8 6 4 12 12 C 1.53113 * 109.52745 * 299.31332 * 3 2 1 13 13 C 1.53172 * 109.20883 * 297.69008 * 12 3 2 14 14 N 1.46840 * 109.55854 * 300.85998 * 13 12 3 15 15 C 1.46898 * 111.00356 * 185.84306 * 14 13 12 16 16 C 1.52989 * 117.50211 * 124.53642 * 15 14 13 17 17 C 1.52999 * 117.50113 * 55.87174 * 15 14 13 18 18 C 1.46844 * 111.19852 * 61.73798 * 14 13 12 19 19 C 1.53035 * 109.52706 * 298.25982 * 18 14 13 20 20 H 1.09006 * 109.46846 * 185.95068 * 1 2 3 21 21 H 1.08993 * 109.47294 * 305.95244 * 1 2 3 22 22 H 1.09002 * 109.47112 * 65.95538 * 1 2 3 23 23 H 0.96995 * 119.99908 * 180.02562 * 7 6 4 24 24 H 1.09000 * 109.50196 * 57.69323 * 12 3 2 25 25 H 1.08996 * 109.50887 * 177.80859 * 12 3 2 26 26 H 1.09009 * 109.44357 * 180.83153 * 13 12 3 27 27 H 1.09000 * 109.44546 * 60.88971 * 13 12 3 28 28 H 1.09006 * 115.54254 * 270.20773 * 15 14 13 29 29 H 1.08998 * 117.50046 * 359.97438 * 16 15 14 30 30 H 1.08999 * 117.50024 * 145.02322 * 16 15 14 31 31 H 1.09000 * 117.49559 * 214.98242 * 17 15 14 32 32 H 1.08997 * 117.49748 * 359.97438 * 17 15 14 33 33 H 1.09006 * 109.46302 * 178.24394 * 18 14 13 34 34 H 1.09002 * 109.46380 * 58.27827 * 18 14 13 35 35 H 1.08996 * 109.50358 * 299.24013 * 19 18 14 36 36 H 1.08998 * 109.54096 * 179.13531 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5553 2.0592 1.2232 5 1 1.0756 3.0210 1.1174 6 6 1.7515 1.5209 2.4773 7 7 2.2358 0.3046 2.6023 8 14 1.3294 2.5192 3.9987 9 1 0.8043 3.8466 3.5896 10 1 0.2981 1.8021 4.7908 11 1 2.5496 2.7021 4.8249 12 6 1.5729 2.0603 -1.2583 13 6 2.0911 1.3206 -2.4954 14 7 3.5558 1.2331 -2.4382 15 6 4.0973 0.6527 -3.6742 16 6 5.1493 1.4634 -4.4336 17 6 3.7308 1.3340 -4.9943 18 6 3.9967 0.4722 -1.2622 19 6 3.5368 1.1860 0.0109 20 1 -0.3633 -1.0222 0.1065 21 1 -0.3633 0.6033 0.8318 22 1 -0.3633 0.4187 -0.9385 23 1 2.3735 -0.0743 3.4846 24 1 0.4846 2.1114 -1.2922 25 1 1.9846 3.0694 -1.2390 26 1 1.7944 1.8630 -3.3932 27 1 1.6680 0.3164 -2.5215 28 1 4.1982 -0.4326 -3.6790 29 1 5.4394 2.4276 -4.0163 30 1 5.9421 0.9115 -4.9385 31 1 3.5911 0.6969 -5.8676 32 1 3.0876 2.2126 -4.9456 33 1 5.0843 0.3981 -1.2643 34 1 3.5648 -0.5281 -1.2940 35 1 3.9794 2.1812 0.0502 36 1 3.8507 0.6133 0.8836 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260681135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:45 Heat of formation + Delta-G solvation = -13.708508 kcal Electronic energy + Delta-G solvation = -16715.029130 eV Core-core repulsion = 14200.176957 eV Total energy + Delta-G solvation = -2514.852174 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.86351 -36.87796 -34.17403 -32.41111 -30.03813 -29.80399 -25.60631 -25.25713 -22.80380 -21.97118 -21.47364 -20.13905 -18.40511 -16.68675 -16.18535 -14.80492 -14.61689 -14.16940 -14.04383 -13.68124 -13.54466 -12.76501 -12.71630 -12.03471 -11.62354 -11.59148 -11.26827 -11.18168 -10.94065 -10.79510 -10.51717 -10.33127 -10.13567 -10.12133 -9.80743 -9.71502 -9.33157 -8.56547 -8.47374 -7.83299 -7.56976 -5.93849 -4.11398 3.27754 3.36956 3.40601 4.02991 4.33258 4.41871 5.15986 5.20732 5.23283 5.47326 5.61042 5.67076 5.79844 5.95680 6.02524 6.13491 6.18779 6.34223 6.36266 6.39219 6.49021 6.59385 6.61190 6.72655 6.83959 7.04997 7.10278 7.25838 7.43879 7.68034 7.81581 7.84451 8.01418 8.28185 8.82889 9.16391 9.60709 11.05949 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044956 B = 0.008109 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.675190 B = 3452.058674 C = 3606.063062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.371 6.371 3 C 0.240 3.760 4 C -0.554 4.554 5 H 0.055 0.945 6 C 0.081 3.919 7 N -0.852 5.852 8 Si 0.881 3.119 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.283 1.283 12 C -0.135 4.135 13 C 0.066 3.934 14 N -0.510 5.510 15 C 0.011 3.989 16 C -0.167 4.167 17 C -0.180 4.180 18 C 0.062 3.938 19 C -0.085 4.085 20 H 0.047 0.953 21 H 0.045 0.955 22 H 0.007 0.993 23 H 0.257 0.743 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.056 0.944 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 0.388 -9.698 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.290 6.290 3 C 0.202 3.798 4 C -0.592 4.592 5 H 0.073 0.927 6 C -0.124 4.124 7 N -0.488 5.488 8 Si 0.708 3.292 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.209 1.209 12 C -0.173 4.173 13 C -0.061 4.061 14 N -0.235 5.235 15 C -0.098 4.098 16 C -0.205 4.205 17 C -0.218 4.218 18 C -0.065 4.065 19 C -0.123 4.123 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.025 0.975 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.183 0.545 -9.509 9.772 hybrid contribution -0.780 -0.066 0.831 1.142 sum 1.403 0.479 -8.678 8.804 Atomic orbital electron populations 1.22146 0.84960 0.99019 0.98101 1.87830 1.16592 1.30125 1.94410 1.18975 0.90075 0.80759 0.90037 1.21502 1.41348 1.05228 0.91115 0.92679 1.24985 0.94383 0.94421 0.98649 1.70100 1.42688 1.13302 1.22688 0.86739 0.78150 0.80682 0.83614 1.19786 1.21106 1.20865 1.22236 0.99364 0.99961 0.95775 1.22006 0.86683 0.99070 0.98378 1.61817 1.09950 1.51259 1.00447 1.22416 1.03246 0.95004 0.89163 1.23024 0.91771 1.02553 1.03186 1.23007 0.99223 1.03292 0.96261 1.22166 0.98230 0.95590 0.90521 1.21437 0.96136 0.99529 0.95169 0.93453 0.93657 0.97511 0.93263 0.92661 0.91963 0.92641 0.95046 0.89986 0.88379 0.89378 0.89290 0.88554 0.92661 0.94675 0.92552 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 10.25 101.05 1.04 2.28 16 2 O -0.37 -9.43 8.19 -35.23 -0.29 -9.72 16 3 C 0.24 5.87 0.30 -91.65 -0.03 5.84 16 4 C -0.55 -14.84 6.64 -34.44 -0.23 -15.07 16 5 H 0.05 1.49 7.75 -52.49 -0.41 1.08 16 6 C 0.08 2.20 5.19 -17.82 -0.09 2.11 16 7 N -0.85 -23.87 11.18 55.43 0.62 -23.25 16 8 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C -0.14 -2.90 4.55 -26.58 -0.12 -3.02 16 13 C 0.07 1.26 5.21 -3.77 -0.02 1.24 16 14 N -0.51 -9.52 4.80 -226.61 -1.09 -10.61 16 15 C 0.01 0.17 5.30 -67.72 -0.36 -0.19 16 16 C -0.17 -2.20 10.46 -26.70 -0.28 -2.48 16 17 C -0.18 -2.34 9.70 -26.69 -0.26 -2.60 16 18 C 0.06 1.27 5.29 -3.84 -0.02 1.25 16 19 C -0.08 -2.00 4.91 -26.65 -0.13 -2.13 16 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.04 1.10 6.91 -51.93 -0.36 0.74 16 22 H 0.01 0.14 6.70 -51.93 -0.35 -0.21 16 23 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 24 H 0.05 1.16 6.58 -51.93 -0.34 0.82 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 26 H 0.06 0.95 6.68 -51.92 -0.35 0.60 16 27 H 0.03 0.63 7.76 -51.93 -0.40 0.23 16 28 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 1.29 7.24 -51.93 -0.38 0.91 16 33 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 34 H 0.03 0.77 7.76 -51.93 -0.40 0.36 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.09 2.30 6.76 -51.93 -0.35 1.95 16 LS Contribution 280.35 15.07 4.22 4.22 Total: -1.00 -28.07 280.35 -7.90 -35.98 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.85 Total: 0.30 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.50 Total: -12.77 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.47 Total: -33.86 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.29 Total: -9.72 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.07 -7.90 -35.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.270 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds