Wall clock time and date at job start Mon Mar 30 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99683 * 2 1 4 4 C 1.50706 * 109.51983 * 59.44318 * 3 2 1 5 5 H 1.07999 * 119.99830 * 235.19252 * 4 3 2 6 6 C 1.37878 * 120.00026 * 55.19777 * 4 3 2 7 7 N 1.31513 * 119.99945 * 354.48048 * 6 4 3 8 8 Si 1.86800 * 119.99927 * 174.48334 * 6 4 3 9 9 H 1.48502 * 109.46779 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46812 * 119.99595 * 8 6 4 11 11 H 1.48492 * 109.47285 * 239.99665 * 8 6 4 12 12 C 1.53113 * 109.52745 * 299.31332 * 3 2 1 13 13 C 1.53172 * 109.20883 * 297.69008 * 12 3 2 14 14 N 1.46840 * 109.55854 * 300.85998 * 13 12 3 15 15 C 1.46898 * 111.00356 * 185.84306 * 14 13 12 16 16 C 1.52989 * 117.50211 * 124.53642 * 15 14 13 17 17 C 1.52999 * 117.50113 * 55.87174 * 15 14 13 18 18 C 1.46844 * 111.19852 * 61.73798 * 14 13 12 19 19 C 1.53035 * 109.52706 * 298.25982 * 18 14 13 20 20 H 1.09006 * 109.46846 * 185.95068 * 1 2 3 21 21 H 1.08993 * 109.47294 * 305.95244 * 1 2 3 22 22 H 1.09002 * 109.47112 * 65.95538 * 1 2 3 23 23 H 0.96995 * 119.99908 * 180.02562 * 7 6 4 24 24 H 1.09000 * 109.50196 * 57.69323 * 12 3 2 25 25 H 1.08996 * 109.50887 * 177.80859 * 12 3 2 26 26 H 1.09009 * 109.44357 * 180.83153 * 13 12 3 27 27 H 1.09000 * 109.44546 * 60.88971 * 13 12 3 28 28 H 1.09006 * 115.54254 * 270.20773 * 15 14 13 29 29 H 1.08998 * 117.50046 * 359.97438 * 16 15 14 30 30 H 1.08999 * 117.50024 * 145.02322 * 16 15 14 31 31 H 1.09000 * 117.49559 * 214.98242 * 17 15 14 32 32 H 1.08997 * 117.49748 * 359.97438 * 17 15 14 33 33 H 1.09006 * 109.46302 * 178.24394 * 18 14 13 34 34 H 1.09002 * 109.46380 * 58.27827 * 18 14 13 35 35 H 1.08996 * 109.50358 * 299.24013 * 19 18 14 36 36 H 1.08998 * 109.54096 * 179.13531 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5553 2.0592 1.2232 5 1 1.0756 3.0210 1.1174 6 6 1.7515 1.5209 2.4773 7 7 2.2358 0.3046 2.6023 8 14 1.3294 2.5192 3.9987 9 1 0.8043 3.8466 3.5896 10 1 0.2981 1.8021 4.7908 11 1 2.5496 2.7021 4.8249 12 6 1.5729 2.0603 -1.2583 13 6 2.0911 1.3206 -2.4954 14 7 3.5558 1.2331 -2.4382 15 6 4.0973 0.6527 -3.6742 16 6 5.1493 1.4634 -4.4336 17 6 3.7308 1.3340 -4.9943 18 6 3.9967 0.4722 -1.2622 19 6 3.5368 1.1860 0.0109 20 1 -0.3633 -1.0222 0.1065 21 1 -0.3633 0.6033 0.8318 22 1 -0.3633 0.4187 -0.9385 23 1 2.3735 -0.0743 3.4846 24 1 0.4846 2.1114 -1.2922 25 1 1.9846 3.0694 -1.2390 26 1 1.7944 1.8630 -3.3932 27 1 1.6680 0.3164 -2.5215 28 1 4.1982 -0.4326 -3.6790 29 1 5.4394 2.4276 -4.0163 30 1 5.9421 0.9115 -4.9385 31 1 3.5911 0.6969 -5.8676 32 1 3.0876 2.2126 -4.9456 33 1 5.0843 0.3981 -1.2643 34 1 3.5648 -0.5281 -1.2940 35 1 3.9794 2.1812 0.0502 36 1 3.8507 0.6133 0.8836 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260681135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:45 Heat of formation + Delta-G solvation = -31.170911 kcal Electronic energy + Delta-G solvation = -16715.786357 eV Core-core repulsion = 14200.176957 eV Total energy + Delta-G solvation = -2515.609400 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46709 -38.38394 -35.70585 -34.44355 -31.73252 -31.54349 -27.53923 -27.08480 -24.29247 -23.55157 -22.79120 -21.49089 -20.18029 -18.65548 -17.60381 -16.69176 -15.99428 -15.90137 -15.71594 -15.56289 -15.18748 -14.40065 -14.27567 -13.65729 -13.41750 -13.21579 -12.95433 -12.76051 -12.61871 -12.40400 -12.27040 -12.12013 -11.88833 -11.65024 -11.32035 -11.14720 -10.98007 -10.57269 -10.38882 -9.68255 -9.11342 -7.99721 -6.23556 1.37957 1.42057 1.51299 2.42847 2.89427 3.01216 3.18118 3.75049 4.05287 4.14031 4.16441 4.28210 4.37967 4.54840 4.58286 4.70313 4.75439 4.81742 4.87027 4.87725 4.93179 4.99045 5.09725 5.14436 5.21126 5.28886 5.38238 5.46633 5.57677 5.71796 5.95788 6.22118 6.28751 6.39886 6.78777 7.21808 7.53703 8.98646 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044956 B = 0.008109 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.675190 B = 3452.058674 C = 3606.063062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.391 6.391 3 C 0.232 3.768 4 C -0.568 4.568 5 H 0.046 0.954 6 C 0.040 3.960 7 N -0.879 5.879 8 Si 0.938 3.062 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.280 1.280 12 C -0.129 4.129 13 C 0.074 3.926 14 N -0.514 5.514 15 C -0.020 4.020 16 C -0.154 4.154 17 C -0.163 4.163 18 C 0.076 3.924 19 C -0.081 4.081 20 H 0.063 0.937 21 H 0.023 0.977 22 H 0.028 0.972 23 H 0.257 0.743 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.019 0.981 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.017 0.983 35 H 0.049 0.951 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 0.823 -11.360 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 O -0.310 6.310 3 C 0.194 3.806 4 C -0.606 4.606 5 H 0.064 0.936 6 C -0.163 4.163 7 N -0.515 5.515 8 Si 0.764 3.236 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.206 1.206 12 C -0.167 4.167 13 C -0.053 4.053 14 N -0.238 5.238 15 C -0.128 4.128 16 C -0.192 4.192 17 C -0.200 4.200 18 C -0.051 4.051 19 C -0.119 4.119 20 H 0.081 0.919 21 H 0.041 0.959 22 H 0.047 0.953 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.038 0.962 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.324 0.990 -11.185 11.467 hybrid contribution -0.831 -0.196 1.316 1.569 sum 1.493 0.794 -9.869 10.013 Atomic orbital electron populations 1.22199 0.83772 0.99791 0.98278 1.87787 1.18002 1.30658 1.94567 1.19054 0.90361 0.80580 0.90639 1.21787 1.41175 1.05046 0.92544 0.93576 1.25600 0.94404 0.95226 1.01111 1.70216 1.43662 1.14526 1.23089 0.85839 0.77878 0.79383 0.80479 1.19503 1.20877 1.20557 1.22107 0.99479 0.99484 0.95670 1.21912 0.87103 0.98278 0.98003 1.61771 1.09592 1.51259 1.01206 1.22516 1.06033 0.95454 0.88835 1.23096 0.92409 1.01795 1.01900 1.23106 0.98881 1.02817 0.95232 1.21902 0.98859 0.94260 0.90125 1.21282 0.95999 0.98836 0.95781 0.91887 0.95881 0.95324 0.93393 0.92527 0.92454 0.90061 0.96227 0.89878 0.89084 0.87013 0.86884 0.88776 0.91193 0.96430 0.93256 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.55 10.25 113.37 1.16 3.71 16 2 O -0.39 -20.05 8.19 -148.98 -1.22 -21.27 16 3 C 0.23 11.45 0.30 -11.46 0.00 11.45 16 4 C -0.57 -30.82 6.64 25.60 0.17 -30.65 16 5 H 0.05 2.52 7.75 -2.91 -0.02 2.50 16 6 C 0.04 2.18 5.19 84.66 0.44 2.62 16 7 N -0.88 -50.17 11.18 21.45 0.24 -49.93 16 8 Si 0.94 43.30 29.54 68.60 2.03 45.32 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 C -0.13 -5.47 4.55 30.69 0.14 -5.33 16 13 C 0.07 2.72 5.21 86.37 0.45 3.17 16 14 N -0.51 -18.43 4.80 -870.87 -4.18 -22.61 16 15 C -0.02 -0.56 5.30 44.91 0.24 -0.33 16 16 C -0.15 -3.54 10.46 30.62 0.32 -3.22 16 17 C -0.16 -3.64 9.70 30.62 0.30 -3.34 16 18 C 0.08 3.11 5.29 86.33 0.46 3.56 16 19 C -0.08 -3.89 4.91 30.65 0.15 -3.74 16 20 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 21 H 0.02 1.12 6.91 -2.39 -0.02 1.10 16 22 H 0.03 1.14 6.70 -2.39 -0.02 1.12 16 23 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 24 H 0.06 2.33 6.58 -2.39 -0.02 2.32 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.08 2.55 6.68 -2.38 -0.02 2.53 16 27 H 0.02 0.76 7.76 -2.39 -0.02 0.74 16 28 H 0.08 2.38 8.08 -2.38 -0.02 2.36 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 2.17 7.24 -2.39 -0.02 2.16 16 33 H 0.07 2.60 8.12 -2.38 -0.02 2.58 16 34 H 0.02 0.77 7.76 -2.39 -0.02 0.75 16 35 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 3.03 6.76 -2.39 -0.02 3.01 16 Total: -1.00 -59.98 280.35 1.72 -58.26 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.04 Total: 12.31 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 3.82 Total: -22.09 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -3.94 Total: -72.54 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.22 Total: -21.27 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -59.98 1.72 -58.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.090 kcal (2) G-P(sol) polarization free energy of solvation -59.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds