Wall clock time and date at job start Mon Mar 30 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.50842 * 111.00162 * 2 1 4 4 C 1.48926 * 106.35336 * 173.59545 * 3 2 1 5 5 C 1.51100 * 117.15585 * 60.55234 * 4 3 2 6 6 C 1.51704 * 106.85662 * 268.32477 * 5 4 3 7 7 H 1.08991 * 109.87511 * 335.55056 * 6 5 4 8 8 C 1.50697 * 109.87391 * 214.48495 * 6 5 4 9 9 H 1.08005 * 120.00159 * 335.06448 * 8 6 5 10 10 C 1.37877 * 120.00123 * 155.06840 * 8 6 5 11 11 N 1.31510 * 120.00478 * 186.97909 * 10 8 6 12 12 Si 1.86802 * 119.99935 * 6.97954 * 10 8 6 13 13 H 1.48499 * 109.47170 * 84.91168 * 12 10 8 14 14 H 1.48495 * 109.47490 * 204.91334 * 12 10 8 15 15 H 1.48507 * 109.47031 * 324.91293 * 12 10 8 16 16 C 1.53493 * 107.37905 * 95.01790 * 6 5 4 17 17 H 1.09002 * 111.27540 * 203.17043 * 16 6 5 18 18 C 1.53163 * 116.87769 * 72.67263 * 16 6 5 19 19 O 1.45285 * 102.79171 * 203.62026 * 18 16 6 20 20 C 1.44745 * 109.79386 * 25.24637 * 19 18 16 21 21 C 1.39640 * 110.99707 * 240.50762 * 2 1 3 22 22 H 1.09001 * 104.69639 * 107.29186 * 21 2 1 23 23 H 1.09001 * 109.47219 * 63.94808 * 1 2 3 24 24 H 1.08997 * 109.47859 * 183.95382 * 1 2 3 25 25 H 1.09003 * 109.47261 * 303.95388 * 1 2 3 26 26 H 1.09000 * 110.07022 * 54.39402 * 3 2 1 27 27 H 1.08995 * 110.07064 * 292.80897 * 3 2 1 28 28 H 1.08994 * 107.91430 * 298.61128 * 4 3 2 29 29 H 1.08998 * 107.88089 * 182.46241 * 4 3 2 30 30 H 1.08995 * 109.97785 * 148.99118 * 5 4 3 31 31 H 1.09000 * 110.05155 * 27.70036 * 5 4 3 32 32 H 0.97004 * 120.00588 * 179.97438 * 11 10 8 33 33 H 1.08999 * 110.74732 * 85.29670 * 18 16 6 34 34 H 1.08994 * 110.90580 * 322.01931 * 18 16 6 35 35 H 1.09004 * 110.34849 * 246.19488 * 20 19 18 36 36 H 1.08994 * 110.35445 * 123.91621 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0096 1.4082 0.0000 4 6 3.4856 1.2907 0.1594 5 6 4.2364 0.5311 -0.9095 6 6 4.3127 -0.9131 -0.4514 7 1 4.2269 -0.9626 0.6340 8 6 5.6190 -1.5219 -0.8917 9 1 6.1399 -1.1212 -1.7488 10 6 6.1494 -2.5904 -0.2003 11 7 7.3513 -3.0341 -0.4966 12 14 5.1605 -3.4079 1.1574 13 1 4.2517 -4.4224 0.5657 14 1 6.0845 -4.0688 2.1136 15 1 4.3589 -2.3822 1.8722 16 6 3.1420 -1.6629 -1.1022 17 1 2.8817 -2.5573 -0.5362 18 6 3.2485 -1.9430 -2.6042 19 8 1.8597 -2.0976 -3.0018 20 6 1.0036 -1.3788 -2.0822 21 6 1.9693 -0.6418 -1.1347 22 1 2.3610 0.1626 -1.7573 23 1 -0.3634 0.4513 -0.9232 24 1 -0.3635 -1.0251 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 1.5872 1.9711 0.8324 27 1 1.7731 1.8997 -0.9437 28 1 3.6820 0.8060 1.1157 29 1 3.8983 2.2984 0.2070 30 1 5.2406 0.9399 -1.0209 31 1 3.7020 0.5934 -1.8574 32 1 7.7246 -3.7856 -0.0099 33 1 3.8070 -2.8609 -2.7872 34 1 3.7079 -1.1029 -3.1249 35 1 0.3803 -2.0753 -1.5214 36 1 0.3830 -0.6637 -2.6222 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260748985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:06 Heat of formation + Delta-G solvation = -10.419323 kcal Electronic energy + Delta-G solvation = -17113.925217 eV Core-core repulsion = 14599.215673 eV Total energy + Delta-G solvation = -2514.709544 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62681 -36.86232 -34.96211 -32.32436 -31.30440 -28.12329 -27.76002 -25.61876 -24.75567 -22.51390 -21.15112 -19.94691 -18.38177 -16.74714 -16.31576 -16.01065 -15.02765 -14.57613 -14.27672 -13.86053 -13.39209 -13.17917 -12.91558 -12.56586 -12.44562 -12.14097 -11.87263 -11.62231 -11.29069 -11.12923 -10.75639 -10.52162 -10.36457 -9.89787 -9.73907 -9.50042 -9.29059 -9.05460 -8.82604 -8.46838 -7.88421 -6.05536 -4.03694 3.33689 3.41322 3.45759 3.91225 4.37656 4.46173 4.92074 5.19924 5.23479 5.27698 5.33260 5.49696 5.58040 5.61121 5.66946 5.75823 5.90234 5.94181 5.98822 6.11934 6.16019 6.33766 6.39823 6.60223 6.66685 6.69749 6.86733 7.05032 7.18359 7.28140 7.38242 7.47846 7.58693 7.80811 8.54733 8.99150 9.58626 11.07333 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.011855 C = 0.010668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.385161 B = 2361.296426 C = 2623.996304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.503 5.503 3 C 0.057 3.943 4 C -0.127 4.127 5 C -0.109 4.109 6 C 0.023 3.977 7 H 0.052 0.948 8 C -0.511 4.511 9 H 0.073 0.927 10 C 0.074 3.926 11 N -0.901 5.901 12 Si 0.868 3.132 13 H -0.276 1.276 14 H -0.292 1.292 15 H -0.259 1.259 16 C -0.097 4.097 17 H 0.067 0.933 18 C 0.076 3.924 19 O -0.401 6.401 20 C 0.045 3.955 21 C 0.017 3.983 22 H 0.056 0.944 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.161 6.930 0.528 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.227 5.227 3 C -0.069 4.069 4 C -0.165 4.165 5 C -0.147 4.147 6 C 0.004 3.996 7 H 0.070 0.930 8 C -0.549 4.549 9 H 0.091 0.909 10 C -0.128 4.128 11 N -0.539 5.539 12 Si 0.696 3.304 13 H -0.202 1.202 14 H -0.219 1.219 15 H -0.184 1.184 16 C -0.117 4.117 17 H 0.086 0.914 18 C 0.000 4.000 19 O -0.321 6.321 20 C -0.033 4.033 21 C -0.094 4.094 22 H 0.074 0.926 23 H 0.043 0.957 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.918 6.430 0.830 13.567 hybrid contribution -0.712 -0.096 0.210 0.748 sum -12.630 6.334 1.040 14.167 Atomic orbital electron populations 1.22438 0.88049 1.02168 1.00132 1.61333 1.07082 1.13592 1.40687 1.22418 0.96412 0.88051 1.00027 1.20753 0.93611 1.00267 1.01877 1.21318 0.99025 0.97700 0.96618 1.19248 0.92877 0.90879 0.96626 0.92972 1.21085 1.03822 1.14978 1.14989 0.90906 1.25010 0.94361 0.96760 0.96685 1.69916 1.15202 1.26522 1.42230 0.87017 0.80345 0.80297 0.82739 1.20193 1.21860 1.18364 1.23015 0.95766 0.97162 0.95806 0.91423 1.23029 0.80746 1.02257 0.93953 1.88889 1.18173 1.73318 1.51692 1.23404 0.93227 0.95176 0.91472 1.22312 0.96482 0.99649 0.90971 0.92600 0.95688 0.91328 0.91566 0.90605 0.94407 0.91219 0.93246 0.91527 0.92752 0.92750 0.88828 0.91813 0.92081 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.63 60.06 0.52 0.77 16 2 N -0.50 -8.05 5.09 -236.77 -1.21 -9.26 16 3 C 0.06 0.81 5.52 -3.60 -0.02 0.79 16 4 C -0.13 -2.08 5.06 -29.68 -0.15 -2.23 16 5 C -0.11 -2.11 5.07 -28.34 -0.14 -2.25 16 6 C 0.02 0.51 1.57 -92.17 -0.14 0.36 16 7 H 0.05 1.26 4.63 -51.93 -0.24 1.02 16 8 C -0.51 -13.67 7.99 -34.44 -0.28 -13.95 16 9 H 0.07 2.11 8.06 -52.48 -0.42 1.69 16 10 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 11 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 12 Si 0.87 21.58 26.22 -169.99 -4.46 17.12 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.26 -6.25 6.12 56.52 0.35 -5.90 16 16 C -0.10 -2.05 2.73 -88.94 -0.24 -2.29 16 17 H 0.07 1.53 6.91 -51.93 -0.36 1.17 16 18 C 0.08 1.54 6.41 37.24 0.24 1.78 16 19 O -0.40 -7.85 11.48 -35.23 -0.40 -8.25 16 20 C 0.05 0.75 6.07 37.71 0.23 0.98 16 21 C 0.02 0.30 1.93 -69.55 -0.13 0.17 16 22 H 0.06 1.00 3.47 -51.93 -0.18 0.82 16 23 H 0.02 0.29 7.36 -51.93 -0.38 -0.10 16 24 H 0.07 0.85 7.16 -51.93 -0.37 0.48 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.51 7.72 -51.93 -0.40 0.11 16 28 H 0.07 1.25 6.98 -51.93 -0.36 0.89 16 29 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.07 1.34 7.80 -51.93 -0.40 0.93 16 31 H 0.05 1.01 4.59 -51.93 -0.24 0.77 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.09 2.00 8.14 -51.93 -0.42 1.57 16 34 H 0.06 1.27 7.25 -51.93 -0.38 0.89 16 35 H 0.06 0.97 7.21 -51.93 -0.37 0.59 16 36 H 0.06 0.88 7.65 -51.93 -0.40 0.48 16 LS Contribution 261.19 15.07 3.94 3.94 Total: -1.00 -29.36 261.19 -6.97 -36.33 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.39 Total: 0.34 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -0.22 Total: -13.89 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.43 Total: -35.59 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.40 Total: -8.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.46 Total: 17.12 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.36 -6.97 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.910 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds