Wall clock time and date at job start Mon Mar 30 2020 03:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.50842 * 111.00162 * 2 1 4 4 C 1.48926 * 106.35336 * 173.59545 * 3 2 1 5 5 C 1.51100 * 117.15585 * 60.55234 * 4 3 2 6 6 C 1.51704 * 106.85662 * 268.32477 * 5 4 3 7 7 H 1.08991 * 109.87511 * 335.55056 * 6 5 4 8 8 C 1.50697 * 109.87391 * 214.48495 * 6 5 4 9 9 H 1.08005 * 120.00159 * 335.06448 * 8 6 5 10 10 C 1.37877 * 120.00123 * 155.06840 * 8 6 5 11 11 N 1.31510 * 120.00478 * 186.97909 * 10 8 6 12 12 Si 1.86802 * 119.99935 * 6.97954 * 10 8 6 13 13 H 1.48499 * 109.47170 * 84.91168 * 12 10 8 14 14 H 1.48495 * 109.47490 * 204.91334 * 12 10 8 15 15 H 1.48507 * 109.47031 * 324.91293 * 12 10 8 16 16 C 1.53493 * 107.37905 * 95.01790 * 6 5 4 17 17 H 1.09002 * 111.27540 * 203.17043 * 16 6 5 18 18 C 1.53163 * 116.87769 * 72.67263 * 16 6 5 19 19 O 1.45285 * 102.79171 * 203.62026 * 18 16 6 20 20 C 1.44745 * 109.79386 * 25.24637 * 19 18 16 21 21 C 1.39640 * 110.99707 * 240.50762 * 2 1 3 22 22 H 1.09001 * 104.69639 * 107.29186 * 21 2 1 23 23 H 1.09001 * 109.47219 * 63.94808 * 1 2 3 24 24 H 1.08997 * 109.47859 * 183.95382 * 1 2 3 25 25 H 1.09003 * 109.47261 * 303.95388 * 1 2 3 26 26 H 1.09000 * 110.07022 * 54.39402 * 3 2 1 27 27 H 1.08995 * 110.07064 * 292.80897 * 3 2 1 28 28 H 1.08994 * 107.91430 * 298.61128 * 4 3 2 29 29 H 1.08998 * 107.88089 * 182.46241 * 4 3 2 30 30 H 1.08995 * 109.97785 * 148.99118 * 5 4 3 31 31 H 1.09000 * 110.05155 * 27.70036 * 5 4 3 32 32 H 0.97004 * 120.00588 * 179.97438 * 11 10 8 33 33 H 1.08999 * 110.74732 * 85.29670 * 18 16 6 34 34 H 1.08994 * 110.90580 * 322.01931 * 18 16 6 35 35 H 1.09004 * 110.34849 * 246.19488 * 20 19 18 36 36 H 1.08994 * 110.35445 * 123.91621 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0096 1.4082 0.0000 4 6 3.4856 1.2907 0.1594 5 6 4.2364 0.5311 -0.9095 6 6 4.3127 -0.9131 -0.4514 7 1 4.2269 -0.9626 0.6340 8 6 5.6190 -1.5219 -0.8917 9 1 6.1399 -1.1212 -1.7488 10 6 6.1494 -2.5904 -0.2003 11 7 7.3513 -3.0341 -0.4966 12 14 5.1605 -3.4079 1.1574 13 1 4.2517 -4.4224 0.5657 14 1 6.0845 -4.0688 2.1136 15 1 4.3589 -2.3822 1.8722 16 6 3.1420 -1.6629 -1.1022 17 1 2.8817 -2.5573 -0.5362 18 6 3.2485 -1.9430 -2.6042 19 8 1.8597 -2.0976 -3.0018 20 6 1.0036 -1.3788 -2.0822 21 6 1.9693 -0.6418 -1.1347 22 1 2.3610 0.1626 -1.7573 23 1 -0.3634 0.4513 -0.9232 24 1 -0.3635 -1.0251 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 1.5872 1.9711 0.8324 27 1 1.7731 1.8997 -0.9437 28 1 3.6820 0.8060 1.1157 29 1 3.8983 2.2984 0.2070 30 1 5.2406 0.9399 -1.0209 31 1 3.7020 0.5934 -1.8574 32 1 7.7246 -3.7856 -0.0099 33 1 3.8070 -2.8609 -2.7872 34 1 3.7079 -1.1029 -3.1249 35 1 0.3803 -2.0753 -1.5214 36 1 0.3830 -0.6637 -2.6222 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260748985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:05 Heat of formation + Delta-G solvation = -31.935205 kcal Electronic energy + Delta-G solvation = -17114.858215 eV Core-core repulsion = 14599.215673 eV Total energy + Delta-G solvation = -2515.642543 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.05625 -38.25046 -36.54264 -34.22705 -32.87267 -29.58932 -29.25737 -27.13976 -26.09793 -24.27431 -22.56192 -21.32991 -19.99178 -18.78745 -17.74006 -17.42254 -16.57236 -16.01898 -15.81354 -15.35484 -14.89711 -14.65114 -14.54953 -14.24291 -13.83714 -13.50957 -13.31886 -13.09061 -12.87068 -12.71282 -12.23424 -12.10524 -11.89843 -11.65912 -11.51611 -11.20681 -10.85015 -10.69941 -10.58518 -10.47192 -9.11538 -8.25964 -6.25644 1.33419 1.35744 1.45184 2.35935 2.67399 2.93961 3.12709 3.56673 3.88325 3.95756 4.14903 4.20491 4.31291 4.37657 4.47762 4.53356 4.54410 4.61535 4.78148 4.79025 4.93386 4.96483 5.01490 5.05582 5.10824 5.13447 5.39863 5.43180 5.61270 5.66112 5.76879 5.86813 6.09647 6.36306 6.38425 6.80572 7.38879 8.90571 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.011855 C = 0.010668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.385161 B = 2361.296426 C = 2623.996304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.527 5.527 3 C 0.061 3.939 4 C -0.124 4.124 5 C -0.106 4.106 6 C 0.026 3.974 7 H 0.040 0.960 8 C -0.502 4.502 9 H 0.038 0.962 10 C 0.018 3.982 11 N -0.949 5.949 12 Si 0.926 3.074 13 H -0.273 1.273 14 H -0.292 1.292 15 H -0.245 1.245 16 C -0.109 4.109 17 H 0.049 0.951 18 C 0.082 3.918 19 O -0.412 6.412 20 C 0.044 3.956 21 C 0.035 3.965 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.263 0.737 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.140 8.463 1.260 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.251 5.251 3 C -0.064 4.064 4 C -0.161 4.161 5 C -0.143 4.143 6 C 0.007 3.993 7 H 0.058 0.942 8 C -0.540 4.540 9 H 0.056 0.944 10 C -0.179 4.179 11 N -0.590 5.590 12 Si 0.752 3.248 13 H -0.199 1.199 14 H -0.219 1.219 15 H -0.169 1.169 16 C -0.129 4.129 17 H 0.068 0.932 18 C 0.006 3.994 19 O -0.332 6.332 20 C -0.034 4.034 21 C -0.077 4.077 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.930 7.986 1.568 17.004 hybrid contribution 0.226 -0.520 -0.063 0.571 sum -14.704 7.465 1.504 16.559 Atomic orbital electron populations 1.22519 0.85562 1.02795 1.01878 1.61250 1.09411 1.14608 1.39848 1.22471 0.94378 0.87461 1.02093 1.20663 0.95453 1.00709 0.99298 1.21209 0.99000 0.95798 0.98287 1.19168 0.91217 0.93018 0.95906 0.94187 1.21373 1.05200 1.14196 1.13222 0.94409 1.25742 0.95170 0.97688 0.99299 1.70051 1.17111 1.27649 1.44179 0.86084 0.79008 0.79568 0.80188 1.19900 1.21869 1.16932 1.22839 0.97033 0.97478 0.95532 0.93248 1.22812 0.81541 1.01240 0.93815 1.88867 1.17623 1.74158 1.52571 1.23623 0.92766 0.95741 0.91235 1.22003 0.95427 0.98458 0.91808 0.92756 0.94146 0.91428 0.89505 0.87746 0.92788 0.93050 0.90917 0.93273 0.91792 0.92839 0.90919 0.91695 0.91051 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.63 127.69 1.10 1.50 16 2 N -0.53 -14.83 5.09 -903.02 -4.60 -19.42 16 3 C 0.06 1.47 5.52 84.23 0.46 1.94 16 4 C -0.12 -3.70 5.06 28.68 0.15 -3.56 16 5 C -0.11 -3.98 5.07 29.55 0.15 -3.83 16 6 C 0.03 1.16 1.57 -11.80 -0.02 1.14 16 7 H 0.04 1.91 4.63 -2.39 -0.01 1.90 16 8 C -0.50 -27.73 7.99 25.60 0.20 -27.53 16 9 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 10 C 0.02 1.04 5.47 84.66 0.46 1.50 16 11 N -0.95 -59.25 13.96 21.45 0.30 -58.96 16 12 Si 0.93 45.33 26.22 68.60 1.80 47.13 16 13 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 14 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 15 H -0.25 -11.37 6.12 99.48 0.61 -10.76 16 16 C -0.11 -4.49 2.73 -9.70 -0.03 -4.52 16 17 H 0.05 2.20 6.91 -2.39 -0.02 2.19 16 18 C 0.08 3.34 6.41 72.04 0.46 3.80 16 19 O -0.41 -15.47 11.48 -148.98 -1.71 -17.18 16 20 C 0.04 1.31 6.07 72.34 0.44 1.75 16 21 C 0.03 1.13 1.93 47.45 0.09 1.22 16 22 H 0.05 1.78 3.47 -2.39 -0.01 1.77 16 23 H 0.04 0.71 7.36 -2.39 -0.02 0.69 16 24 H 0.07 1.39 7.16 -2.39 -0.02 1.37 16 25 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 1.16 7.72 -2.39 -0.02 1.14 16 28 H 0.05 1.74 6.98 -2.39 -0.02 1.72 16 29 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 30 H 0.05 1.98 7.80 -2.39 -0.02 1.96 16 31 H 0.06 2.28 4.59 -2.39 -0.01 2.27 16 32 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.06 2.60 7.25 -2.39 -0.02 2.58 16 35 H 0.07 2.02 7.21 -2.38 -0.02 2.00 16 36 H 0.09 2.21 7.65 -2.39 -0.02 2.19 16 Total: -1.00 -64.79 261.19 0.23 -64.56 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.96 Total: 10.45 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 3.48 Total: -26.58 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -4.30 Total: -78.38 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -1.71 Total: -17.18 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.80 Total: 47.13 kcal Total: -64.79 0.23 -64.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.628 kcal (2) G-P(sol) polarization free energy of solvation -64.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds