Wall clock time and date at job start Mon Mar 30 2020 03:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46968 * 111.00138 * 2 1 4 4 C 1.52961 * 109.85327 * 185.21358 * 3 2 1 5 5 C 1.53225 * 109.56080 * 301.56815 * 4 3 2 6 6 H 1.09002 * 109.57961 * 297.56024 * 5 4 3 7 7 C 1.50700 * 109.58315 * 177.29185 * 5 4 3 8 8 H 1.07999 * 119.99921 * 245.45142 * 7 5 4 9 9 C 1.37872 * 119.99826 * 65.45025 * 7 5 4 10 10 N 1.31512 * 120.00134 * 9.35814 * 9 7 5 11 11 Si 1.86804 * 120.00220 * 189.35693 * 9 7 5 12 12 H 1.48498 * 109.46879 * 94.98710 * 11 9 7 13 13 H 1.48500 * 109.47410 * 214.98965 * 11 9 7 14 14 H 1.48502 * 109.46824 * 334.99187 * 11 9 7 15 15 C 1.52974 * 108.81679 * 57.35518 * 5 4 3 16 16 H 1.08997 * 109.49679 * 61.30321 * 15 5 4 17 17 C 1.52925 * 110.27206 * 181.97431 * 15 5 4 18 18 O 1.43028 * 109.07048 * 177.79663 * 17 15 5 19 19 C 1.42833 * 114.41036 * 299.18747 * 18 17 15 20 20 C 1.53180 * 109.71613 * 60.45124 * 19 18 17 21 21 C 1.46686 * 110.99909 * 123.74000 * 2 1 3 22 22 H 1.08994 * 109.46919 * 293.50890 * 21 2 1 23 23 H 1.08999 * 109.47178 * 296.26028 * 1 2 3 24 24 H 1.09002 * 109.47002 * 56.26259 * 1 2 3 25 25 H 1.09000 * 109.47131 * 176.25597 * 1 2 3 26 26 H 1.08995 * 109.40574 * 305.33349 * 3 2 1 27 27 H 1.09005 * 109.40540 * 65.09747 * 3 2 1 28 28 H 1.09005 * 109.45362 * 61.59395 * 4 3 2 29 29 H 1.08998 * 109.45883 * 181.54003 * 4 3 2 30 30 H 0.97009 * 120.00046 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.53908 * 297.67672 * 17 15 5 32 32 H 1.08998 * 109.53244 * 57.92366 * 17 15 5 33 33 H 1.09003 * 109.43031 * 180.53244 * 19 18 17 34 34 H 1.09005 * 109.43233 * 300.42451 * 19 18 17 35 35 H 1.09008 * 109.56278 * 182.96608 * 20 19 18 36 36 H 1.08999 * 109.56913 * 62.61034 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3721 0.0000 4 6 3.5195 1.3435 -0.1307 5 6 4.1187 0.5386 1.0272 6 1 3.8823 1.0270 1.9725 7 6 5.6143 0.4539 0.8627 8 1 6.0842 -0.5011 0.6796 9 6 6.3827 1.5957 0.9460 10 7 5.8415 2.7245 1.3489 11 14 8.1925 1.5392 0.4865 12 1 8.3570 1.9578 -0.9288 13 1 8.9557 2.4597 1.3669 14 1 8.7032 0.1551 0.6558 15 6 3.5182 -0.8683 1.0129 16 1 3.7719 -1.3626 0.0752 17 6 4.0578 -1.6866 2.1866 18 8 3.4419 -2.9775 2.1786 19 6 2.0206 -2.9544 2.3183 20 6 1.4000 -2.1701 1.1581 21 6 1.9946 -0.7606 1.1388 22 1 1.7421 -0.2470 2.0663 23 1 -0.3633 0.4547 0.9216 24 1 -0.3633 0.5708 -0.8546 25 1 -0.3633 -1.0255 -0.0671 26 1 1.5704 1.9232 -0.8387 27 1 1.7213 1.8653 0.9325 28 1 3.7940 0.8776 -1.0772 29 1 3.9054 2.3625 -0.1026 30 1 6.3821 3.5279 1.4072 31 1 5.1376 -1.7973 2.0880 32 1 3.8261 -1.1781 3.1225 33 1 1.6389 -3.9753 2.3113 34 1 1.7567 -2.4752 3.2612 35 1 0.3203 -2.1090 1.2951 36 1 1.6224 -2.6732 0.2171 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260760339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:42 Heat of formation + Delta-G solvation = -54.477019 kcal Electronic energy + Delta-G solvation = -16799.590566 eV Core-core repulsion = 14282.970537 eV Total energy + Delta-G solvation = -2516.620029 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63022 -36.85801 -34.26468 -31.69843 -31.59024 -29.49578 -26.82071 -24.88068 -23.69830 -23.22503 -20.71479 -19.88843 -18.90930 -16.29315 -15.85475 -15.53828 -14.67625 -14.50027 -14.42843 -14.17116 -13.64091 -13.09804 -12.81358 -12.34105 -12.07151 -11.85152 -11.32412 -11.27974 -11.06969 -10.83711 -10.74315 -10.66119 -10.39763 -10.11305 -9.88356 -9.64284 -9.15704 -8.79606 -8.57792 -8.32549 -7.79324 -6.02840 -4.04040 3.31347 3.38949 3.42279 4.33341 4.43516 4.48431 5.17112 5.29422 5.34746 5.40347 5.52866 5.66994 5.72944 5.81954 5.92501 5.97932 6.04542 6.09343 6.15072 6.25639 6.30960 6.39814 6.50919 6.72812 6.87864 7.00423 7.06649 7.28842 7.55642 7.63890 7.73995 7.82410 7.95729 8.00646 8.42445 8.99067 9.59616 11.06153 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029866 B = 0.010092 C = 0.007974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.305498 B = 2773.932190 C = 3510.669303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.534 5.534 3 C 0.056 3.944 4 C -0.101 4.101 5 C 0.056 3.944 6 H 0.029 0.971 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.065 3.935 10 N -0.889 5.889 11 Si 0.886 3.114 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.273 1.273 15 C -0.100 4.100 16 H 0.073 0.927 17 C 0.075 3.925 18 O -0.393 6.393 19 C 0.066 3.934 20 C -0.149 4.149 21 C 0.088 3.912 22 H 0.032 0.968 23 H 0.017 0.983 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.023 0.977 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.260 0.740 31 H 0.105 0.895 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 -5.767 0.112 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.071 4.071 4 C -0.139 4.139 5 C 0.037 3.963 6 H 0.047 0.953 7 C -0.551 4.551 8 H 0.076 0.924 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.714 3.286 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.198 1.198 15 C -0.119 4.119 16 H 0.092 0.908 17 C -0.001 4.001 18 O -0.312 6.312 19 C -0.012 4.012 20 C -0.187 4.187 21 C -0.021 4.021 22 H 0.050 0.950 23 H 0.035 0.965 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.664 -5.959 -0.304 10.520 hybrid contribution 0.424 0.910 0.460 1.104 sum -8.240 -5.050 0.156 9.665 Atomic orbital electron populations 1.22378 0.89134 1.01388 0.99716 1.62044 1.05987 1.14901 1.42878 1.22262 0.98802 0.87263 0.98796 1.21609 0.89638 1.02661 1.00007 1.18652 0.94531 0.88375 0.94729 0.95336 1.21141 0.91307 0.93629 1.49029 0.92414 1.24951 0.98173 0.95736 0.94826 1.69964 1.36355 1.00330 1.46077 0.86679 0.85535 0.77970 0.78451 1.20743 1.21428 1.19799 1.21841 0.91425 0.99936 0.98732 0.90832 1.22701 0.98423 0.81940 0.97059 1.87860 1.18741 1.30344 1.94275 1.22434 0.82407 0.99950 0.96399 1.22314 0.99446 0.96538 1.00414 1.21675 0.96701 0.92482 0.91221 0.95019 0.96482 0.92034 0.91712 0.92458 0.95891 0.93431 0.90481 0.93073 0.87679 0.93999 0.89667 0.94050 0.91810 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.07 60.06 0.54 0.87 16 2 N -0.53 -9.67 4.79 -234.88 -1.12 -10.79 16 3 C 0.06 1.10 5.45 -3.81 -0.02 1.08 16 4 C -0.10 -2.33 5.17 -26.63 -0.14 -2.47 16 5 C 0.06 1.35 1.57 -91.67 -0.14 1.21 16 6 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 7 C -0.51 -13.63 7.75 -34.44 -0.27 -13.90 16 8 H 0.06 1.53 7.11 -52.49 -0.37 1.15 16 9 C 0.06 1.76 5.23 -17.82 -0.09 1.67 16 10 N -0.89 -25.06 12.18 55.43 0.68 -24.38 16 11 Si 0.89 21.06 29.55 -169.99 -5.02 16.04 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 C -0.10 -2.10 1.74 -90.54 -0.16 -2.26 16 16 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 17 C 0.08 1.49 5.93 37.12 0.22 1.71 16 18 O -0.39 -7.25 10.75 -35.23 -0.38 -7.63 16 19 C 0.07 0.98 6.84 37.25 0.25 1.24 16 20 C -0.15 -2.27 4.94 -26.64 -0.13 -2.41 16 21 C 0.09 1.61 1.70 -67.70 -0.12 1.49 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 0.82 8.11 -51.93 -0.42 0.39 16 25 H 0.06 0.83 6.35 -51.93 -0.33 0.51 16 26 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.96 6.98 -51.93 -0.36 1.60 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.11 2.19 7.02 -51.93 -0.36 1.82 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.83 6.59 -51.92 -0.34 0.49 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 273.92 15.07 4.13 4.13 Total: -1.00 -27.86 273.92 -7.74 -35.60 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.97 Total: -1.19 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.05 Total: -11.77 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.45 Total: -35.18 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.38 Total: -7.63 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.86 -7.74 -35.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.876 kcal (2) G-P(sol) polarization free energy of solvation -27.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds