Wall clock time and date at job start Mon Mar 30 2020 03:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46968 * 111.00138 * 2 1 4 4 C 1.52961 * 109.85327 * 185.21358 * 3 2 1 5 5 C 1.53225 * 109.56080 * 301.56815 * 4 3 2 6 6 H 1.09002 * 109.57961 * 297.56024 * 5 4 3 7 7 C 1.50700 * 109.58315 * 177.29185 * 5 4 3 8 8 H 1.07999 * 119.99921 * 245.45142 * 7 5 4 9 9 C 1.37872 * 119.99826 * 65.45025 * 7 5 4 10 10 N 1.31512 * 120.00134 * 9.35814 * 9 7 5 11 11 Si 1.86804 * 120.00220 * 189.35693 * 9 7 5 12 12 H 1.48498 * 109.46879 * 94.98710 * 11 9 7 13 13 H 1.48500 * 109.47410 * 214.98965 * 11 9 7 14 14 H 1.48502 * 109.46824 * 334.99187 * 11 9 7 15 15 C 1.52974 * 108.81679 * 57.35518 * 5 4 3 16 16 H 1.08997 * 109.49679 * 61.30321 * 15 5 4 17 17 C 1.52925 * 110.27206 * 181.97431 * 15 5 4 18 18 O 1.43028 * 109.07048 * 177.79663 * 17 15 5 19 19 C 1.42833 * 114.41036 * 299.18747 * 18 17 15 20 20 C 1.53180 * 109.71613 * 60.45124 * 19 18 17 21 21 C 1.46686 * 110.99909 * 123.74000 * 2 1 3 22 22 H 1.08994 * 109.46919 * 293.50890 * 21 2 1 23 23 H 1.08999 * 109.47178 * 296.26028 * 1 2 3 24 24 H 1.09002 * 109.47002 * 56.26259 * 1 2 3 25 25 H 1.09000 * 109.47131 * 176.25597 * 1 2 3 26 26 H 1.08995 * 109.40574 * 305.33349 * 3 2 1 27 27 H 1.09005 * 109.40540 * 65.09747 * 3 2 1 28 28 H 1.09005 * 109.45362 * 61.59395 * 4 3 2 29 29 H 1.08998 * 109.45883 * 181.54003 * 4 3 2 30 30 H 0.97009 * 120.00046 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.53908 * 297.67672 * 17 15 5 32 32 H 1.08998 * 109.53244 * 57.92366 * 17 15 5 33 33 H 1.09003 * 109.43031 * 180.53244 * 19 18 17 34 34 H 1.09005 * 109.43233 * 300.42451 * 19 18 17 35 35 H 1.09008 * 109.56278 * 182.96608 * 20 19 18 36 36 H 1.08999 * 109.56913 * 62.61034 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3721 0.0000 4 6 3.5195 1.3435 -0.1307 5 6 4.1187 0.5386 1.0272 6 1 3.8823 1.0270 1.9725 7 6 5.6143 0.4539 0.8627 8 1 6.0842 -0.5011 0.6796 9 6 6.3827 1.5957 0.9460 10 7 5.8415 2.7245 1.3489 11 14 8.1925 1.5392 0.4865 12 1 8.3570 1.9578 -0.9288 13 1 8.9557 2.4597 1.3669 14 1 8.7032 0.1551 0.6558 15 6 3.5182 -0.8683 1.0129 16 1 3.7719 -1.3626 0.0752 17 6 4.0578 -1.6866 2.1866 18 8 3.4419 -2.9775 2.1786 19 6 2.0206 -2.9544 2.3183 20 6 1.4000 -2.1701 1.1581 21 6 1.9946 -0.7606 1.1388 22 1 1.7421 -0.2470 2.0663 23 1 -0.3633 0.4547 0.9216 24 1 -0.3633 0.5708 -0.8546 25 1 -0.3633 -1.0255 -0.0671 26 1 1.5704 1.9232 -0.8387 27 1 1.7213 1.8653 0.9325 28 1 3.7940 0.8776 -1.0772 29 1 3.9054 2.3625 -0.1026 30 1 6.3821 3.5279 1.4072 31 1 5.1376 -1.7973 2.0880 32 1 3.8261 -1.1781 3.1225 33 1 1.6389 -3.9753 2.3113 34 1 1.7567 -2.4752 3.2612 35 1 0.3203 -2.1090 1.2951 36 1 1.6224 -2.6732 0.2171 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:42 Heat of formation + Delta-G solvation = -72.937426 kcal Electronic energy + Delta-G solvation = -16800.391069 eV Core-core repulsion = 14282.970537 eV Total energy + Delta-G solvation = -2517.420532 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14231 -38.32835 -36.05187 -33.51150 -33.13926 -31.00408 -28.52384 -26.40417 -25.43138 -24.67012 -22.30858 -21.42252 -20.63400 -18.34216 -17.30955 -16.97474 -16.48468 -16.04873 -15.83403 -15.73319 -15.07376 -14.68435 -14.38976 -13.99727 -13.62119 -13.35877 -13.05503 -12.81537 -12.73637 -12.45131 -12.42732 -12.13028 -12.08194 -11.94772 -11.55907 -11.36717 -10.85158 -10.57069 -10.42681 -10.22383 -9.23110 -8.12376 -6.19670 1.40284 1.42720 1.52024 2.43838 2.93876 3.07118 3.20259 3.82997 3.95863 4.12831 4.16173 4.33003 4.35406 4.38332 4.57533 4.59928 4.65932 4.72102 4.76290 4.81436 4.88992 4.97999 5.03410 5.13710 5.21476 5.24078 5.35185 5.43687 5.61977 5.88748 5.95485 6.20192 6.29958 6.36386 6.38188 6.90149 7.46786 8.96031 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029866 B = 0.010092 C = 0.007974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.305498 B = 2773.932190 C = 3510.669303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.543 5.543 3 C 0.066 3.934 4 C -0.094 4.094 5 C 0.057 3.943 6 H -0.006 1.006 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.018 3.982 10 N -0.918 5.918 11 Si 0.945 3.055 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.267 1.267 15 C -0.094 4.094 16 H 0.056 0.944 17 C 0.085 3.915 18 O -0.403 6.403 19 C 0.057 3.943 20 C -0.139 4.139 21 C 0.089 3.911 22 H 0.021 0.979 23 H 0.022 0.978 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.014 0.986 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.260 0.740 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.120 0.880 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 -7.131 -0.212 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.267 5.267 3 C -0.062 4.062 4 C -0.132 4.132 5 C 0.038 3.962 6 H 0.012 0.988 7 C -0.564 4.564 8 H 0.071 0.929 9 C -0.181 4.181 10 N -0.557 5.557 11 Si 0.772 3.228 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.113 4.113 16 H 0.075 0.925 17 C 0.008 3.992 18 O -0.322 6.322 19 C -0.020 4.020 20 C -0.177 4.177 21 C -0.020 4.020 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.158 -7.340 -0.630 12.548 hybrid contribution 0.840 1.313 0.572 1.660 sum -9.318 -6.027 -0.058 11.098 Atomic orbital electron populations 1.22494 0.86201 1.03235 1.00658 1.62019 1.08594 1.13444 1.42674 1.22063 0.96126 0.88838 0.99194 1.21408 0.92584 1.00393 0.98854 1.18558 0.93850 0.90466 0.93327 0.98779 1.21455 0.92874 0.93453 1.48595 0.92862 1.25662 1.02125 0.95482 0.94850 1.70078 1.37753 1.00831 1.47057 0.85732 0.80900 0.78102 0.78107 1.20382 1.21117 1.19187 1.21672 0.93843 0.97544 0.98283 0.92528 1.22412 0.97717 0.82698 0.96387 1.87841 1.21140 1.28910 1.94339 1.22780 0.80262 1.02200 0.96715 1.22265 1.01157 0.93835 1.00407 1.21638 0.94735 0.94680 0.90920 0.96064 0.95921 0.90626 0.89477 0.90414 0.96773 0.94458 0.93481 0.93103 0.89468 0.94306 0.86174 0.93087 0.88551 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.07 127.69 1.16 1.71 16 2 N -0.54 -18.66 4.79 -897.01 -4.29 -22.95 16 3 C 0.07 2.54 5.45 86.28 0.47 3.01 16 4 C -0.09 -4.47 5.17 30.66 0.16 -4.32 16 5 C 0.06 2.85 1.57 -11.47 -0.02 2.83 16 6 H -0.01 -0.34 8.10 -2.39 -0.02 -0.36 16 7 C -0.53 -28.83 7.75 25.60 0.20 -28.63 16 8 H 0.05 2.90 7.11 -2.91 -0.02 2.88 16 9 C 0.02 0.98 5.23 84.65 0.44 1.42 16 10 N -0.92 -53.32 12.18 21.45 0.26 -53.06 16 11 Si 0.95 43.92 29.55 68.60 2.03 45.95 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 C -0.09 -4.00 1.74 -10.74 -0.02 -4.01 16 16 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 17 C 0.08 3.40 5.93 71.96 0.43 3.83 16 18 O -0.40 -14.29 10.75 -148.98 -1.60 -15.89 16 19 C 0.06 1.52 6.84 72.04 0.49 2.02 16 20 C -0.14 -3.77 4.94 30.65 0.15 -3.62 16 21 C 0.09 3.14 1.70 45.04 0.08 3.21 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.07 1.72 8.11 -2.39 -0.02 1.70 16 25 H 0.09 1.83 6.35 -2.39 -0.02 1.82 16 26 H 0.08 2.67 8.10 -2.39 -0.02 2.66 16 27 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.05 2.49 6.98 -2.39 -0.02 2.47 16 30 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 31 H 0.09 3.75 7.02 -2.39 -0.02 3.73 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.10 2.03 6.59 -2.38 -0.02 2.02 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -61.13 273.92 0.96 -60.17 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 1.03 Total: 8.34 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 3.54 Total: -22.55 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -4.03 Total: -76.01 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -1.60 Total: -15.89 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -61.13 0.96 -60.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.771 kcal (2) G-P(sol) polarization free energy of solvation -61.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds