Wall clock time and date at job start Mon Mar 30 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46798 * 110.99896 * 2 1 4 4 C 1.53071 * 109.44633 * 186.18731 * 3 2 1 5 5 C 1.53113 * 109.15325 * 300.54947 * 4 3 2 6 6 H 1.08999 * 109.49367 * 297.65733 * 5 4 3 7 7 C 1.50704 * 109.49138 * 177.57094 * 5 4 3 8 8 H 1.07993 * 119.99945 * 240.14727 * 7 5 4 9 9 C 1.37884 * 119.99970 * 60.15219 * 7 5 4 10 10 N 1.31516 * 119.99808 * 0.02562 * 9 7 5 11 11 Si 1.86792 * 119.99766 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47443 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47006 * 120.00296 * 11 9 7 14 14 H 1.48504 * 109.47498 * 240.00004 * 11 9 7 15 15 C 1.52948 * 109.32469 * 57.61976 * 5 4 3 16 16 H 1.08991 * 109.44274 * 182.74763 * 15 5 4 17 17 C 1.53016 * 109.67151 * 62.64846 * 15 5 4 18 18 O 1.42925 * 109.35514 * 182.12071 * 17 15 5 19 19 C 1.42882 * 114.17042 * 60.90566 * 18 17 15 20 20 C 1.53103 * 109.49302 * 299.04242 * 19 18 17 21 21 C 1.46876 * 111.00058 * 124.40746 * 2 1 3 22 22 H 1.08998 * 109.63342 * 295.39511 * 21 2 1 23 23 H 1.09000 * 109.47266 * 295.59641 * 1 2 3 24 24 H 1.09005 * 109.47314 * 55.59521 * 1 2 3 25 25 H 1.08999 * 109.47556 * 175.59556 * 1 2 3 26 26 H 1.08994 * 109.47858 * 306.18071 * 3 2 1 27 27 H 1.09002 * 109.47496 * 66.19824 * 3 2 1 28 28 H 1.09001 * 109.52048 * 180.65103 * 4 3 2 29 29 H 1.08996 * 109.52602 * 60.45076 * 4 3 2 30 30 H 0.97001 * 119.99286 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.48727 * 62.15616 * 17 15 5 32 32 H 1.09001 * 109.51428 * 302.10142 * 17 15 5 33 33 H 1.09008 * 109.46574 * 179.04016 * 19 18 17 34 34 H 1.08996 * 109.46964 * 59.05096 * 19 18 17 35 35 H 1.09003 * 109.54543 * 297.85021 * 20 19 18 36 36 H 1.08996 * 109.54321 * 177.57677 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3705 0.0000 4 6 3.5173 1.3320 -0.1556 5 6 4.1210 0.5369 1.0053 6 1 3.8968 1.0398 1.9461 7 6 5.6146 0.4434 0.8278 8 1 6.0881 -0.5229 0.7363 9 6 6.3767 1.5916 0.7824 10 7 5.8002 2.7683 0.8946 11 14 8.2281 1.4757 0.5631 12 1 8.6263 0.0485 0.4627 13 1 8.6252 2.1884 -0.6777 14 1 8.9048 2.0979 1.7294 15 6 3.5200 -0.8694 1.0222 16 1 3.9117 -1.4212 1.8767 17 6 3.8875 -1.6022 -0.2698 18 8 3.2818 -2.8967 -0.2689 19 6 1.8544 -2.8747 -0.2088 20 6 1.4081 -2.1902 1.0859 21 6 1.9954 -0.7748 1.1313 22 1 1.7156 -0.2920 2.0676 23 1 -0.3634 0.4440 0.9268 24 1 -0.3634 0.5807 -0.8479 25 1 -0.3634 -1.0246 -0.0789 26 1 1.5590 1.9272 -0.8294 27 1 1.7381 1.8584 0.9403 28 1 3.9104 2.3486 -0.1441 29 1 3.7751 0.8513 -1.0992 30 1 6.3363 3.5761 0.8622 31 1 4.9706 -1.7074 -0.3327 32 1 3.5272 -1.0326 -1.1265 33 1 1.4742 -3.8962 -0.2294 34 1 1.4632 -2.3242 -1.0643 35 1 1.7664 -2.7612 1.9425 36 1 0.3199 -2.1345 1.1125 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260760343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:44 Heat of formation + Delta-G solvation = -47.648713 kcal Electronic energy + Delta-G solvation = -17039.691086 eV Core-core repulsion = 14523.367155 eV Total energy + Delta-G solvation = -2516.323931 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79453 -36.41794 -34.40061 -31.64980 -31.60472 -28.96049 -26.88852 -24.80804 -23.67787 -23.22547 -21.51580 -19.95827 -17.75398 -16.32121 -15.61918 -15.35107 -14.93436 -14.64766 -14.55200 -14.21911 -13.32236 -12.84330 -12.32320 -12.21853 -12.08364 -12.03394 -11.44189 -11.35885 -11.18624 -10.97579 -10.75579 -10.45102 -10.31257 -10.03063 -9.75744 -9.43412 -8.97109 -8.81957 -8.59099 -8.26501 -7.68521 -5.99955 -4.05405 3.29931 3.38513 3.42841 4.42760 4.45068 4.61784 5.21472 5.30772 5.41994 5.50222 5.54714 5.72883 5.83855 5.90672 5.98059 6.06305 6.08296 6.19166 6.23078 6.39437 6.42932 6.51566 6.58289 6.77189 6.92588 6.97123 7.14504 7.38975 7.56288 7.66595 7.81068 7.97270 7.97979 8.12599 8.42877 8.97713 9.59555 11.06154 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035905 B = 0.009903 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.646868 B = 2826.743157 C = 3360.078207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.056 3.944 4 C -0.108 4.108 5 C 0.055 3.945 6 H 0.023 0.977 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.889 3.111 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C -0.100 4.100 16 H 0.063 0.937 17 C 0.081 3.919 18 O -0.398 6.398 19 C 0.073 3.927 20 C -0.151 4.151 21 C 0.088 3.912 22 H 0.035 0.965 23 H 0.017 0.983 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.022 0.978 28 H 0.094 0.906 29 H 0.046 0.954 30 H 0.259 0.741 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.010 -5.558 -1.450 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.071 4.071 4 C -0.146 4.146 5 C 0.037 3.963 6 H 0.041 0.959 7 C -0.549 4.549 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.717 3.283 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.119 4.119 16 H 0.081 0.919 17 C 0.005 3.995 18 O -0.317 6.317 19 C -0.005 4.005 20 C -0.189 4.189 21 C -0.021 4.021 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.693 -5.756 -1.883 10.594 hybrid contribution 0.445 0.827 0.792 1.229 sum -8.247 -4.928 -1.090 9.669 Atomic orbital electron populations 1.22400 0.89246 1.01344 0.99716 1.61958 1.05864 1.14889 1.43361 1.22281 0.99073 0.87101 0.98676 1.21739 0.89251 1.04130 0.99470 1.18623 0.94496 0.88470 0.94727 0.95914 1.21236 0.91566 0.92553 1.49511 0.92308 1.24963 0.98336 0.95491 0.95127 1.69886 1.35105 0.97309 1.50682 0.86583 0.85917 0.78198 0.77610 1.19700 1.21088 1.21174 1.21742 0.91593 1.00377 0.98218 0.91881 1.22650 0.97631 0.81888 0.97302 1.87816 1.18593 1.30499 1.94833 1.22285 0.82605 0.99131 0.96436 1.22355 1.00136 0.96736 0.99716 1.21727 0.96634 0.92359 0.91349 0.94683 0.96482 0.92057 0.91732 0.92519 0.95979 0.88773 0.93487 0.93126 0.88760 0.92264 0.90793 0.92700 0.91374 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.09 60.06 0.55 0.85 16 2 N -0.54 -9.43 3.38 -234.67 -0.79 -10.22 16 3 C 0.06 1.09 5.47 -3.84 -0.02 1.07 16 4 C -0.11 -2.48 4.78 -26.64 -0.13 -2.60 16 5 C 0.06 1.35 1.95 -91.74 -0.18 1.17 16 6 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 7 C -0.51 -13.56 7.86 -34.44 -0.27 -13.83 16 8 H 0.06 1.55 6.54 -52.49 -0.34 1.21 16 9 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 10 N -0.89 -24.89 11.36 55.43 0.63 -24.27 16 11 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 15 C -0.10 -2.11 2.16 -90.56 -0.20 -2.30 16 16 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 17 C 0.08 1.66 5.39 37.17 0.20 1.87 16 18 O -0.40 -7.67 10.76 -35.23 -0.38 -8.05 16 19 C 0.07 1.15 6.67 37.21 0.25 1.40 16 20 C -0.15 -2.32 5.19 -26.52 -0.14 -2.46 16 21 C 0.09 1.60 2.15 -67.49 -0.14 1.45 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 25 H 0.06 0.82 6.14 -51.93 -0.32 0.50 16 26 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 29 H 0.05 1.10 6.57 -51.93 -0.34 0.76 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.09 2.05 6.55 -51.93 -0.34 1.71 16 32 H 0.06 1.26 6.03 -51.93 -0.31 0.94 16 33 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.05 0.88 7.69 -51.93 -0.40 0.48 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.85 6.18 -51.93 -0.32 0.53 16 LS Contribution 265.69 15.07 4.00 4.00 Total: -1.00 -27.47 265.69 -7.37 -34.84 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.63 Total: -0.51 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.18 Total: -11.82 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: -0.16 Total: -34.49 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.38 Total: -8.05 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.47 -7.37 -34.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.810 kcal (2) G-P(sol) polarization free energy of solvation -27.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds