Wall clock time and date at job start Mon Mar 30 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46798 * 110.99896 * 2 1 4 4 C 1.53071 * 109.44633 * 186.18731 * 3 2 1 5 5 C 1.53113 * 109.15325 * 300.54947 * 4 3 2 6 6 H 1.08999 * 109.49367 * 297.65733 * 5 4 3 7 7 C 1.50704 * 109.49138 * 177.57094 * 5 4 3 8 8 H 1.07993 * 119.99945 * 240.14727 * 7 5 4 9 9 C 1.37884 * 119.99970 * 60.15219 * 7 5 4 10 10 N 1.31516 * 119.99808 * 0.02562 * 9 7 5 11 11 Si 1.86792 * 119.99766 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47443 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47006 * 120.00296 * 11 9 7 14 14 H 1.48504 * 109.47498 * 240.00004 * 11 9 7 15 15 C 1.52948 * 109.32469 * 57.61976 * 5 4 3 16 16 H 1.08991 * 109.44274 * 182.74763 * 15 5 4 17 17 C 1.53016 * 109.67151 * 62.64846 * 15 5 4 18 18 O 1.42925 * 109.35514 * 182.12071 * 17 15 5 19 19 C 1.42882 * 114.17042 * 60.90566 * 18 17 15 20 20 C 1.53103 * 109.49302 * 299.04242 * 19 18 17 21 21 C 1.46876 * 111.00058 * 124.40746 * 2 1 3 22 22 H 1.08998 * 109.63342 * 295.39511 * 21 2 1 23 23 H 1.09000 * 109.47266 * 295.59641 * 1 2 3 24 24 H 1.09005 * 109.47314 * 55.59521 * 1 2 3 25 25 H 1.08999 * 109.47556 * 175.59556 * 1 2 3 26 26 H 1.08994 * 109.47858 * 306.18071 * 3 2 1 27 27 H 1.09002 * 109.47496 * 66.19824 * 3 2 1 28 28 H 1.09001 * 109.52048 * 180.65103 * 4 3 2 29 29 H 1.08996 * 109.52602 * 60.45076 * 4 3 2 30 30 H 0.97001 * 119.99286 * 180.02562 * 10 9 7 31 31 H 1.09000 * 109.48727 * 62.15616 * 17 15 5 32 32 H 1.09001 * 109.51428 * 302.10142 * 17 15 5 33 33 H 1.09008 * 109.46574 * 179.04016 * 19 18 17 34 34 H 1.08996 * 109.46964 * 59.05096 * 19 18 17 35 35 H 1.09003 * 109.54543 * 297.85021 * 20 19 18 36 36 H 1.08996 * 109.54321 * 177.57677 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3705 0.0000 4 6 3.5173 1.3320 -0.1556 5 6 4.1210 0.5369 1.0053 6 1 3.8968 1.0398 1.9461 7 6 5.6146 0.4434 0.8278 8 1 6.0881 -0.5229 0.7363 9 6 6.3767 1.5916 0.7824 10 7 5.8002 2.7683 0.8946 11 14 8.2281 1.4757 0.5631 12 1 8.6263 0.0485 0.4627 13 1 8.6252 2.1884 -0.6777 14 1 8.9048 2.0979 1.7294 15 6 3.5200 -0.8694 1.0222 16 1 3.9117 -1.4212 1.8767 17 6 3.8875 -1.6022 -0.2698 18 8 3.2818 -2.8967 -0.2689 19 6 1.8544 -2.8747 -0.2088 20 6 1.4081 -2.1902 1.0859 21 6 1.9954 -0.7748 1.1313 22 1 1.7156 -0.2920 2.0676 23 1 -0.3634 0.4440 0.9268 24 1 -0.3634 0.5807 -0.8479 25 1 -0.3634 -1.0246 -0.0789 26 1 1.5590 1.9272 -0.8294 27 1 1.7381 1.8584 0.9403 28 1 3.9104 2.3486 -0.1441 29 1 3.7751 0.8513 -1.0992 30 1 6.3363 3.5761 0.8622 31 1 4.9706 -1.7074 -0.3327 32 1 3.5272 -1.0326 -1.1265 33 1 1.4742 -3.8962 -0.2294 34 1 1.4632 -2.3242 -1.0643 35 1 1.7664 -2.7612 1.9425 36 1 0.3199 -2.1345 1.1125 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:43 Heat of formation + Delta-G solvation = -64.880278 kcal Electronic energy + Delta-G solvation = -17040.438303 eV Core-core repulsion = 14523.367155 eV Total energy + Delta-G solvation = -2517.071148 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32442 -37.92449 -36.15661 -33.55745 -33.07595 -30.49068 -28.58757 -26.36872 -25.42954 -24.65523 -23.11857 -21.58865 -19.34595 -18.33990 -17.17100 -16.85816 -16.58072 -16.17723 -16.07541 -15.81219 -14.72563 -14.59610 -14.06128 -13.88828 -13.55696 -13.39364 -13.11601 -12.86895 -12.74108 -12.65855 -12.47444 -12.10982 -11.98690 -11.82726 -11.41075 -11.16051 -10.67272 -10.62906 -10.40351 -10.15174 -9.12047 -8.08003 -6.20337 1.39763 1.42759 1.53507 2.43923 3.04304 3.15661 3.22980 3.86127 4.02665 4.15755 4.23114 4.32077 4.44059 4.55186 4.65417 4.68589 4.70011 4.75488 4.86228 4.94277 4.99237 5.03300 5.09535 5.13499 5.22147 5.30169 5.37027 5.55246 5.62455 5.94706 6.02707 6.27623 6.32892 6.39580 6.49383 6.89627 7.47436 8.96766 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035905 B = 0.009903 C = 0.008331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.646868 B = 2826.743157 C = 3360.078207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.065 3.935 4 C -0.098 4.098 5 C 0.056 3.944 6 H -0.015 1.015 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.015 3.985 10 N -0.917 5.917 11 Si 0.949 3.051 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.283 1.283 15 C -0.097 4.097 16 H 0.049 0.951 17 C 0.096 3.904 18 O -0.409 6.409 19 C 0.066 3.934 20 C -0.142 4.142 21 C 0.088 3.912 22 H 0.025 0.975 23 H 0.021 0.979 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.011 0.989 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.259 0.741 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.501 -6.912 -2.047 12.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.062 4.062 4 C -0.136 4.136 5 C 0.037 3.963 6 H 0.003 0.997 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.184 4.184 10 N -0.556 5.556 11 Si 0.775 3.225 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.209 1.209 15 C -0.117 4.117 16 H 0.067 0.933 17 C 0.020 3.980 18 O -0.329 6.329 19 C -0.010 4.010 20 C -0.180 4.180 21 C -0.021 4.021 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.030 0.970 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.202 -7.125 -2.479 12.688 hybrid contribution 0.869 1.231 0.996 1.806 sum -9.333 -5.894 -1.483 11.138 Atomic orbital electron populations 1.22519 0.86346 1.03238 1.00591 1.61918 1.08361 1.13236 1.42871 1.22076 0.96479 0.88760 0.98927 1.21485 0.92089 1.01721 0.98315 1.18535 0.93925 0.90516 0.93318 0.99694 1.21547 0.93114 0.92402 1.49259 0.92751 1.25686 1.02407 0.95256 0.95043 1.70018 1.36453 0.97781 1.51390 0.85637 0.81043 0.78265 0.77527 1.19210 1.20629 1.20939 1.21607 0.94048 0.97948 0.98063 0.93255 1.22295 0.96710 0.82543 0.96445 1.87798 1.20999 1.29197 1.94869 1.22586 0.80480 1.01334 0.96621 1.22324 1.01915 0.94110 0.99673 1.21671 0.94538 0.94641 0.91234 0.95710 0.96072 0.90620 0.89403 0.90519 0.97038 0.91914 0.94267 0.93138 0.90770 0.92953 0.87443 0.92464 0.91053 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.09 127.69 1.16 1.67 16 2 N -0.54 -17.88 3.38 -896.35 -3.03 -20.91 16 3 C 0.07 2.50 5.47 86.35 0.47 2.98 16 4 C -0.10 -4.62 4.78 30.66 0.15 -4.47 16 5 C 0.06 2.80 1.95 -11.52 -0.02 2.78 16 6 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 7 C -0.53 -28.81 7.86 25.60 0.20 -28.60 16 8 H 0.05 2.96 6.54 -2.91 -0.02 2.94 16 9 C 0.01 0.81 5.30 84.66 0.45 1.25 16 10 N -0.92 -52.79 11.36 21.45 0.24 -52.55 16 11 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 C -0.10 -4.15 2.16 -10.76 -0.02 -4.17 16 16 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 17 C 0.10 3.96 5.39 71.99 0.39 4.34 16 18 O -0.41 -15.05 10.76 -148.98 -1.60 -16.66 16 19 C 0.07 1.85 6.67 72.02 0.48 2.33 16 20 C -0.14 -3.88 5.19 30.73 0.16 -3.72 16 21 C 0.09 3.08 2.15 45.07 0.10 3.17 16 22 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.08 1.67 8.09 -2.38 -0.02 1.65 16 25 H 0.09 1.77 6.14 -2.39 -0.01 1.76 16 26 H 0.08 2.62 8.08 -2.39 -0.02 2.60 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 3.35 6.16 -2.39 -0.01 3.33 16 29 H 0.04 1.87 6.57 -2.39 -0.02 1.85 16 30 H 0.26 14.24 8.31 -92.71 -0.77 13.46 16 31 H 0.07 3.30 6.55 -2.39 -0.02 3.28 16 32 H 0.05 2.21 6.03 -2.39 -0.01 2.20 16 33 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.06 1.61 7.69 -2.39 -0.02 1.59 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 2.06 6.18 -2.39 -0.01 2.05 16 Total: -1.00 -60.33 265.69 2.19 -58.14 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.05 Total: 8.47 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 3.51 Total: -22.43 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -2.79 Total: -73.46 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -1.60 Total: -16.66 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -60.33 2.19 -58.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.743 kcal (2) G-P(sol) polarization free energy of solvation -60.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds