Wall clock time and date at job start Mon Mar 30 2020 03:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46972 * 110.99971 * 2 1 4 4 C 1.52965 * 109.84395 * 174.77748 * 3 2 1 5 5 C 1.53225 * 109.56141 * 58.43776 * 4 3 2 6 6 H 1.09004 * 109.68955 * 182.78059 * 5 4 3 7 7 C 1.50704 * 109.57920 * 62.45025 * 5 4 3 8 8 H 1.07992 * 120.00170 * 246.11185 * 7 5 4 9 9 C 1.37883 * 119.99822 * 66.10724 * 7 5 4 10 10 N 1.31512 * 119.99795 * 9.21067 * 9 7 5 11 11 Si 1.86801 * 119.99967 * 189.20780 * 9 7 5 12 12 H 1.48501 * 109.46880 * 94.99198 * 11 9 7 13 13 H 1.48495 * 109.46839 * 214.99458 * 11 9 7 14 14 H 1.48496 * 109.46755 * 334.99295 * 11 9 7 15 15 C 1.52971 * 108.82878 * 302.64710 * 5 4 3 16 16 H 1.08999 * 109.61539 * 298.61340 * 15 5 4 17 17 C 1.52919 * 110.26297 * 177.98321 * 15 5 4 18 18 O 1.43028 * 109.07375 * 182.21878 * 17 15 5 19 19 C 1.42850 * 114.41353 * 60.81393 * 18 17 15 20 20 C 1.53189 * 109.71354 * 299.55430 * 19 18 17 21 21 C 1.46680 * 111.00120 * 236.26730 * 2 1 3 22 22 H 1.09001 * 109.45570 * 66.50549 * 21 2 1 23 23 H 1.08995 * 109.47025 * 183.73593 * 1 2 3 24 24 H 1.08997 * 109.47257 * 303.73629 * 1 2 3 25 25 H 1.09001 * 109.46994 * 63.73441 * 1 2 3 26 26 H 1.08999 * 109.40832 * 54.65745 * 3 2 1 27 27 H 1.09001 * 109.34537 * 294.84967 * 3 2 1 28 28 H 1.09006 * 109.45112 * 298.41674 * 4 3 2 29 29 H 1.08991 * 109.45904 * 178.47038 * 4 3 2 30 30 H 0.97002 * 120.00220 * 180.02562 * 10 9 7 31 31 H 1.09003 * 109.53744 * 62.34788 * 17 15 5 32 32 H 1.08995 * 109.53896 * 302.10021 * 17 15 5 33 33 H 1.08997 * 109.42293 * 59.63107 * 19 18 17 34 34 H 1.08998 * 109.42553 * 179.52940 * 19 18 17 35 35 H 1.09004 * 109.56894 * 177.02485 * 20 19 18 36 36 H 1.08996 * 109.57751 * 297.38707 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3721 0.0000 4 6 3.5195 1.3434 0.1310 5 6 4.1188 0.5384 -1.0269 6 1 5.2006 0.4749 -0.9088 7 6 3.7924 1.2140 -2.3339 8 1 3.1409 0.7281 -3.0450 9 6 4.3255 2.4526 -2.6217 10 7 5.2562 2.9642 -1.8460 11 14 3.7260 3.4039 -4.1133 12 1 2.6599 4.3516 -3.7003 13 1 4.8582 4.1600 -4.7061 14 1 3.1831 2.4560 -5.1193 15 6 3.5182 -0.8684 -1.0131 16 1 3.7719 -1.3653 -0.0767 17 6 4.0574 -1.6859 -2.1875 18 8 3.4414 -2.9768 -2.1803 19 6 2.0199 -2.9534 -2.3198 20 6 1.3996 -2.1698 -1.1588 21 6 1.9947 -0.7604 -1.1388 22 1 1.7423 -0.2463 -2.0662 23 1 -0.3633 -1.0254 0.0670 24 1 -0.3633 0.5707 0.8546 25 1 -0.3633 0.4548 -0.9216 26 1 1.5703 1.9234 0.8386 27 1 1.7216 1.8641 -0.9332 28 1 3.7937 0.8773 1.0774 29 1 3.9056 2.3622 0.1030 30 1 5.6310 3.8358 -2.0482 31 1 5.1373 -1.7970 -2.0891 32 1 3.8258 -1.1767 -3.1230 33 1 1.7561 -2.4744 -3.2627 34 1 1.6381 -3.9743 -2.3123 35 1 0.3199 -2.1083 -1.2955 36 1 1.6221 -2.6734 -0.2181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:45 Heat of formation + Delta-G solvation = -69.793883 kcal Electronic energy + Delta-G solvation = -17076.343896 eV Core-core repulsion = 14559.059678 eV Total energy + Delta-G solvation = -2517.284218 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17636 -38.31316 -35.90257 -33.48860 -33.06925 -30.96005 -28.10568 -26.59642 -25.65119 -24.64234 -22.39892 -21.34023 -20.71276 -17.82954 -17.17619 -16.86589 -16.58974 -16.08736 -15.82733 -15.68428 -14.97858 -14.76707 -14.34947 -14.04379 -13.75150 -13.25784 -12.95498 -12.86445 -12.67447 -12.49379 -12.33005 -12.15247 -12.01562 -11.84609 -11.75148 -11.07680 -10.79120 -10.68295 -10.34076 -10.19385 -9.11831 -8.11727 -6.16605 1.35921 1.39334 1.46760 2.41479 2.99120 3.14166 3.20410 3.88104 4.05005 4.17697 4.21877 4.43560 4.44174 4.50278 4.63259 4.64740 4.68501 4.78891 4.81161 4.88384 4.95498 5.03241 5.04435 5.20444 5.22204 5.32935 5.42107 5.49286 5.60598 5.79449 5.92436 6.26470 6.34860 6.38429 6.43750 6.91509 7.48101 8.97439 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025611 B = 0.011718 C = 0.010100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.007096 B = 2388.904151 C = 2771.587810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.078 3.922 4 C -0.094 4.094 5 C 0.048 3.952 6 H -0.001 1.001 7 C -0.506 4.506 8 H 0.051 0.949 9 C 0.020 3.980 10 N -0.916 5.916 11 Si 0.935 3.065 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.269 1.269 15 C -0.096 4.096 16 H 0.054 0.946 17 C 0.081 3.919 18 O -0.403 6.403 19 C 0.060 3.940 20 C -0.142 4.142 21 C 0.098 3.902 22 H 0.025 0.975 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.016 0.984 26 H 0.067 0.933 27 H 0.017 0.983 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.259 0.741 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.209 -7.626 1.158 12.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.049 4.049 4 C -0.132 4.132 5 C 0.030 3.970 6 H 0.017 0.983 7 C -0.544 4.544 8 H 0.069 0.931 9 C -0.179 4.179 10 N -0.556 5.556 11 Si 0.762 3.238 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.115 4.115 16 H 0.073 0.927 17 C 0.005 3.995 18 O -0.322 6.322 19 C -0.017 4.017 20 C -0.180 4.180 21 C -0.010 4.010 22 H 0.043 0.957 23 H 0.105 0.895 24 H 0.092 0.908 25 H 0.035 0.965 26 H 0.086 0.914 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.138 0.862 35 H 0.109 0.891 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.846 -7.861 1.626 11.945 hybrid contribution -0.200 1.789 -1.475 2.327 sum -9.046 -6.072 0.151 10.896 Atomic orbital electron populations 1.22464 0.86768 1.02991 1.00329 1.62078 1.08198 1.13665 1.42644 1.21824 0.95655 0.88678 0.98793 1.21343 0.94331 1.00417 0.97146 1.18618 0.93990 0.90518 0.93918 0.98255 1.21258 1.28019 1.02541 1.02567 0.93132 1.25570 0.94749 0.98848 0.98697 1.70072 1.26971 1.18133 1.40425 0.85888 0.78000 0.79195 0.80720 1.20543 1.21259 1.19391 1.21641 0.95203 0.97053 0.97583 0.92721 1.22453 0.97109 0.82457 0.97515 1.87803 1.21011 1.29006 1.94390 1.22732 0.80342 1.02012 0.96628 1.22299 1.00995 0.94380 1.00279 1.21472 0.94305 0.93873 0.91350 0.95678 0.89529 0.90761 0.96511 0.91449 0.96458 0.94805 0.93512 0.93187 0.89763 0.93533 0.93656 0.86213 0.89073 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.07 127.69 1.16 1.78 16 2 N -0.54 -19.49 4.79 -896.98 -4.29 -23.78 16 3 C 0.08 3.21 5.24 86.28 0.45 3.66 16 4 C -0.09 -4.41 5.46 30.66 0.17 -4.24 16 5 C 0.05 2.38 2.06 -11.47 -0.02 2.36 16 6 H 0.00 -0.04 8.09 -2.39 -0.02 -0.06 16 7 C -0.51 -26.49 5.94 25.60 0.15 -26.33 16 8 H 0.05 2.65 5.72 -2.91 -0.02 2.63 16 9 C 0.02 1.09 5.20 84.66 0.44 1.53 16 10 N -0.92 -52.48 12.20 21.45 0.26 -52.22 16 11 Si 0.94 43.01 29.55 68.60 2.03 45.04 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 C -0.10 -3.99 2.04 -10.75 -0.02 -4.01 16 16 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 17 C 0.08 3.23 5.95 71.96 0.43 3.66 16 18 O -0.40 -14.23 10.75 -148.98 -1.60 -15.83 16 19 C 0.06 1.67 6.84 72.05 0.49 2.16 16 20 C -0.14 -4.05 4.94 30.66 0.15 -3.89 16 21 C 0.10 3.64 1.51 45.04 0.07 3.71 16 22 H 0.03 1.06 6.54 -2.39 -0.02 1.04 16 23 H 0.09 2.00 6.35 -2.39 -0.02 1.98 16 24 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 25 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 27 H 0.02 0.78 7.36 -2.39 -0.02 0.76 16 28 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.05 2.44 6.91 -2.39 -0.02 2.43 16 30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.05 1.97 6.63 -2.39 -0.02 1.95 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.09 2.13 6.59 -2.39 -0.02 2.11 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -58.96 268.55 0.90 -58.06 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: 1.04 Total: 8.35 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 3.46 Total: -19.63 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: -4.03 Total: -76.00 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -1.60 Total: -15.83 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -58.96 0.90 -58.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.733 kcal (2) G-P(sol) polarization free energy of solvation -58.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds