Wall clock time and date at job start Mon Mar 30 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46828 * 111.00034 * 2 1 4 4 C 1.53062 * 109.45986 * 185.87406 * 3 2 1 5 5 C 1.53086 * 109.19399 * 300.60668 * 4 3 2 6 6 H 1.08999 * 109.49953 * 297.87370 * 5 4 3 7 7 C 1.50694 * 109.50505 * 177.79504 * 5 4 3 8 8 H 1.08000 * 120.00563 * 240.07783 * 7 5 4 9 9 C 1.37885 * 119.99902 * 60.07620 * 7 5 4 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99854 * 179.72538 * 9 7 5 12 12 H 1.48504 * 109.47032 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46816 * 120.00323 * 11 9 7 14 14 H 1.48495 * 109.46630 * 240.00111 * 11 9 7 15 15 C 1.53128 * 109.31001 * 57.83545 * 5 4 3 16 16 H 1.08996 * 109.62350 * 62.95567 * 15 5 4 17 17 C 1.53185 * 109.14669 * 183.59976 * 15 5 4 18 18 O 1.42915 * 109.33205 * 61.58919 * 17 15 5 19 19 C 1.42892 * 114.17231 * 61.22940 * 18 17 15 20 20 C 1.53119 * 109.43819 * 298.95688 * 19 18 17 21 21 C 1.46663 * 111.00097 * 124.48589 * 2 1 3 22 22 H 1.09004 * 109.25037 * 54.55307 * 21 2 1 23 23 H 1.08998 * 109.47622 * 295.50932 * 1 2 3 24 24 H 1.08997 * 109.47579 * 55.51282 * 1 2 3 25 25 H 1.09004 * 109.47456 * 175.51106 * 1 2 3 26 26 H 1.08995 * 109.47957 * 305.88324 * 3 2 1 27 27 H 1.09001 * 109.48050 * 65.91443 * 3 2 1 28 28 H 1.08992 * 109.55478 * 180.66756 * 4 3 2 29 29 H 1.09006 * 109.47946 * 60.49703 * 4 3 2 30 30 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.49247 * 181.54055 * 17 15 5 32 32 H 1.08998 * 109.49764 * 301.63450 * 17 15 5 33 33 H 1.09003 * 109.47710 * 178.96637 * 19 18 17 34 34 H 1.09000 * 109.47587 * 58.94696 * 19 18 17 35 35 H 1.09003 * 109.53057 * 297.52778 * 20 19 18 36 36 H 1.08996 * 109.58981 * 177.34822 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3708 0.0000 4 6 3.5181 1.3323 -0.1477 5 6 4.1168 0.5387 1.0164 6 1 3.8848 1.0401 1.9560 7 6 5.6118 0.4503 0.8490 8 1 6.0893 -0.5144 0.7612 9 6 6.3701 1.6011 0.8079 10 7 5.7888 2.7759 0.9153 11 14 8.2242 1.4913 0.6080 12 1 8.6285 0.0653 0.5162 13 1 8.6314 2.2016 -0.6308 14 1 8.8863 2.1196 1.7793 15 6 3.5195 -0.8713 1.0283 16 1 3.7940 -1.3928 0.1114 17 6 4.0524 -1.6324 2.2462 18 8 3.6451 -0.9601 3.4397 19 6 2.2288 -0.8770 3.6102 20 6 1.6206 -0.0905 2.4458 21 6 1.9945 -0.7752 1.1286 22 1 1.5661 -1.7773 1.1068 23 1 -0.3634 0.4425 0.9274 24 1 -0.3634 0.5819 -0.8470 25 1 -0.3634 -1.0245 -0.0804 26 1 1.5631 1.9259 -0.8325 27 1 1.7339 1.8604 0.9381 28 1 3.9115 2.3487 -0.1360 29 1 3.7799 0.8504 -1.0897 30 1 6.3222 3.5855 0.8860 31 1 3.6520 -2.6462 2.2452 32 1 5.1408 -1.6706 2.2036 33 1 2.0049 -0.3690 4.5483 34 1 1.8057 -1.8813 3.6307 35 1 2.0103 0.9275 2.4507 36 1 0.5358 -0.0658 2.5485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260760350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:47 Heat of formation + Delta-G solvation = -46.273037 kcal Electronic energy + Delta-G solvation = -17104.561867 eV Core-core repulsion = 14588.297589 eV Total energy + Delta-G solvation = -2516.264278 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88626 -36.63578 -34.03181 -31.53072 -31.05321 -29.77643 -26.71204 -24.90835 -23.74711 -22.95814 -21.10129 -20.56937 -17.35379 -16.48896 -15.79616 -15.47131 -14.89006 -14.58751 -14.31390 -13.77410 -13.47533 -13.06756 -12.69672 -12.22978 -12.07955 -11.91710 -11.55078 -11.24967 -10.94187 -10.71830 -10.68303 -10.51569 -10.05248 -10.01840 -9.94093 -9.43250 -9.11747 -8.79692 -8.42056 -8.18892 -7.65351 -5.90981 -3.94656 3.34652 3.42703 3.45914 4.45223 4.50812 4.60970 5.25916 5.35095 5.40000 5.52346 5.56131 5.68224 5.73624 5.87835 5.93120 6.01912 6.09691 6.12781 6.18973 6.27955 6.30183 6.58292 6.64053 6.74457 6.85696 7.06716 7.20935 7.43179 7.63632 7.73538 7.87459 7.91435 8.15032 8.19786 8.53299 9.07365 9.68375 11.15550 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030752 B = 0.010900 C = 0.009034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.278576 B = 2568.178979 C = 3098.703592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.535 5.535 3 C 0.052 3.948 4 C -0.107 4.107 5 C 0.060 3.940 6 H 0.035 0.965 7 C -0.503 4.503 8 H 0.054 0.946 9 C 0.061 3.939 10 N -0.892 5.892 11 Si 0.887 3.113 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.286 1.286 15 C -0.107 4.107 16 H 0.073 0.927 17 C 0.077 3.923 18 O -0.372 6.372 19 C 0.070 3.930 20 C -0.190 4.190 21 C 0.093 3.907 22 H 0.063 0.937 23 H 0.021 0.979 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.027 0.973 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.257 0.743 31 H 0.027 0.973 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.085 0.915 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 -5.512 1.209 10.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.258 5.258 3 C -0.075 4.075 4 C -0.146 4.146 5 C 0.042 3.958 6 H 0.053 0.947 7 C -0.541 4.541 8 H 0.072 0.928 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.716 3.284 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.126 4.126 16 H 0.091 0.909 17 C 0.000 4.000 18 O -0.290 6.290 19 C -0.008 4.008 20 C -0.229 4.229 21 C -0.016 4.016 22 H 0.081 0.919 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.112 0.888 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.420 -5.466 0.893 10.079 hybrid contribution 0.382 0.358 0.349 0.630 sum -8.038 -5.108 1.243 9.605 Atomic orbital electron populations 1.22337 0.89231 1.01123 0.99822 1.62069 1.05878 1.15291 1.42524 1.22324 0.99199 0.87280 0.98684 1.21708 0.89175 1.04160 0.99518 1.18643 0.94071 0.88274 0.94822 0.94743 1.21192 0.91748 0.92272 1.48912 0.92785 1.24925 0.98062 0.95553 0.95380 1.69879 1.34898 0.97223 1.51158 0.86616 0.86343 0.78011 0.77476 1.19877 1.21256 1.21208 1.21897 0.91647 1.01443 0.97605 0.90881 1.22621 1.01000 0.92157 0.84209 1.87966 1.20369 1.78823 1.41873 1.22347 0.82883 0.97968 0.97644 1.22870 0.99798 1.02865 0.97375 1.21640 0.96945 0.95663 0.87358 0.91885 0.96082 0.92072 0.92300 0.92786 0.95474 0.88791 0.93993 0.93272 0.95492 0.87941 0.89959 0.94425 0.89676 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.31 60.06 0.56 0.90 16 2 N -0.53 -9.70 4.85 -234.97 -1.14 -10.84 16 3 C 0.05 1.04 5.18 -3.83 -0.02 1.02 16 4 C -0.11 -2.55 5.13 -26.65 -0.14 -2.69 16 5 C 0.06 1.48 1.25 -91.66 -0.11 1.36 16 6 H 0.03 0.95 6.12 -51.93 -0.32 0.63 16 7 C -0.50 -13.60 7.82 -34.44 -0.27 -13.87 16 8 H 0.05 1.44 6.96 -52.49 -0.37 1.07 16 9 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 10 N -0.89 -25.52 11.35 55.43 0.63 -24.89 16 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 C -0.11 -2.22 2.17 -90.39 -0.20 -2.41 16 16 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 17 C 0.08 1.50 6.07 37.25 0.23 1.72 16 18 O -0.37 -7.55 10.07 -35.23 -0.35 -7.91 16 19 C 0.07 1.15 6.85 37.22 0.25 1.40 16 20 C -0.19 -3.26 4.39 -26.62 -0.12 -3.37 16 21 C 0.09 1.68 2.23 -67.73 -0.15 1.53 16 22 H 0.06 1.06 8.12 -51.93 -0.42 0.63 16 23 H 0.02 0.29 6.52 -51.93 -0.34 -0.05 16 24 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 27 H 0.03 0.55 6.20 -51.93 -0.32 0.23 16 28 H 0.09 2.48 6.15 -51.93 -0.32 2.17 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 2.11 6.79 -51.93 -0.35 1.76 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.70 4.88 -51.93 -0.25 1.45 16 36 H 0.06 0.87 6.68 -51.93 -0.35 0.52 16 LS Contribution 264.58 15.07 3.99 3.99 Total: -1.00 -28.53 264.58 -7.50 -36.03 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.55 Total: -0.01 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -0.06 Total: -12.81 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.51 Total: -35.73 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.35 Total: -7.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.53 -7.50 -36.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.239 kcal (2) G-P(sol) polarization free energy of solvation -28.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds