Wall clock time and date at job start Mon Mar 30 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46828 * 111.00034 * 2 1 4 4 C 1.53062 * 109.45986 * 185.87406 * 3 2 1 5 5 C 1.53086 * 109.19399 * 300.60668 * 4 3 2 6 6 H 1.08999 * 109.49953 * 297.87370 * 5 4 3 7 7 C 1.50694 * 109.50505 * 177.79504 * 5 4 3 8 8 H 1.08000 * 120.00563 * 240.07783 * 7 5 4 9 9 C 1.37885 * 119.99902 * 60.07620 * 7 5 4 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99854 * 179.72538 * 9 7 5 12 12 H 1.48504 * 109.47032 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46816 * 120.00323 * 11 9 7 14 14 H 1.48495 * 109.46630 * 240.00111 * 11 9 7 15 15 C 1.53128 * 109.31001 * 57.83545 * 5 4 3 16 16 H 1.08996 * 109.62350 * 62.95567 * 15 5 4 17 17 C 1.53185 * 109.14669 * 183.59976 * 15 5 4 18 18 O 1.42915 * 109.33205 * 61.58919 * 17 15 5 19 19 C 1.42892 * 114.17231 * 61.22940 * 18 17 15 20 20 C 1.53119 * 109.43819 * 298.95688 * 19 18 17 21 21 C 1.46663 * 111.00097 * 124.48589 * 2 1 3 22 22 H 1.09004 * 109.25037 * 54.55307 * 21 2 1 23 23 H 1.08998 * 109.47622 * 295.50932 * 1 2 3 24 24 H 1.08997 * 109.47579 * 55.51282 * 1 2 3 25 25 H 1.09004 * 109.47456 * 175.51106 * 1 2 3 26 26 H 1.08995 * 109.47957 * 305.88324 * 3 2 1 27 27 H 1.09001 * 109.48050 * 65.91443 * 3 2 1 28 28 H 1.08992 * 109.55478 * 180.66756 * 4 3 2 29 29 H 1.09006 * 109.47946 * 60.49703 * 4 3 2 30 30 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.49247 * 181.54055 * 17 15 5 32 32 H 1.08998 * 109.49764 * 301.63450 * 17 15 5 33 33 H 1.09003 * 109.47710 * 178.96637 * 19 18 17 34 34 H 1.09000 * 109.47587 * 58.94696 * 19 18 17 35 35 H 1.09003 * 109.53057 * 297.52778 * 20 19 18 36 36 H 1.08996 * 109.58981 * 177.34822 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3708 0.0000 4 6 3.5181 1.3323 -0.1477 5 6 4.1168 0.5387 1.0164 6 1 3.8848 1.0401 1.9560 7 6 5.6118 0.4503 0.8490 8 1 6.0893 -0.5144 0.7612 9 6 6.3701 1.6011 0.8079 10 7 5.7888 2.7759 0.9153 11 14 8.2242 1.4913 0.6080 12 1 8.6285 0.0653 0.5162 13 1 8.6314 2.2016 -0.6308 14 1 8.8863 2.1196 1.7793 15 6 3.5195 -0.8713 1.0283 16 1 3.7940 -1.3928 0.1114 17 6 4.0524 -1.6324 2.2462 18 8 3.6451 -0.9601 3.4397 19 6 2.2288 -0.8770 3.6102 20 6 1.6206 -0.0905 2.4458 21 6 1.9945 -0.7752 1.1286 22 1 1.5661 -1.7773 1.1068 23 1 -0.3634 0.4425 0.9274 24 1 -0.3634 0.5819 -0.8470 25 1 -0.3634 -1.0245 -0.0804 26 1 1.5631 1.9259 -0.8325 27 1 1.7339 1.8604 0.9381 28 1 3.9115 2.3487 -0.1360 29 1 3.7799 0.8504 -1.0897 30 1 6.3222 3.5855 0.8860 31 1 3.6520 -2.6462 2.2452 32 1 5.1408 -1.6706 2.2036 33 1 2.0049 -0.3690 4.5483 34 1 1.8057 -1.8813 3.6307 35 1 2.0103 0.9275 2.4507 36 1 0.5358 -0.0658 2.5485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:47 Heat of formation + Delta-G solvation = -65.680737 kcal Electronic energy + Delta-G solvation = -17105.403448 eV Core-core repulsion = 14588.297589 eV Total energy + Delta-G solvation = -2517.105859 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.40745 -38.11531 -35.87692 -33.34352 -32.62512 -31.31042 -28.44314 -26.38152 -25.50872 -24.36530 -22.82713 -22.14513 -19.01112 -18.47479 -17.26128 -16.98019 -16.55382 -16.29166 -15.92199 -15.23775 -14.92470 -14.59832 -14.36903 -13.91364 -13.70925 -13.45604 -12.89963 -12.84862 -12.70878 -12.50831 -12.38731 -12.14676 -11.93247 -11.65353 -11.52975 -11.14165 -10.87510 -10.64794 -10.24269 -10.09183 -9.06714 -8.02586 -6.12892 1.40142 1.42264 1.52651 2.46585 3.06217 3.21487 3.25644 3.89963 3.92874 4.17683 4.24639 4.34712 4.41047 4.42863 4.55519 4.58249 4.72272 4.78256 4.82302 4.89135 4.91615 5.02283 5.05705 5.19127 5.26474 5.34057 5.42502 5.55002 5.67491 6.06089 6.12931 6.31389 6.37688 6.46583 6.50030 6.98614 7.52966 9.02461 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030752 B = 0.010900 C = 0.009034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.278576 B = 2568.178979 C = 3098.703592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.545 5.545 3 C 0.065 3.935 4 C -0.102 4.102 5 C 0.065 3.935 6 H -0.002 1.002 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.010 3.990 10 N -0.920 5.920 11 Si 0.947 3.053 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.285 1.285 15 C -0.106 4.106 16 H 0.063 0.937 17 C 0.080 3.920 18 O -0.402 6.402 19 C 0.064 3.936 20 C -0.182 4.182 21 C 0.094 3.906 22 H 0.091 0.909 23 H 0.029 0.971 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.257 0.743 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 -7.180 1.321 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.063 4.063 4 C -0.140 4.140 5 C 0.047 3.953 6 H 0.017 0.983 7 C -0.556 4.556 8 H 0.070 0.930 9 C -0.187 4.187 10 N -0.561 5.561 11 Si 0.773 3.227 12 H -0.190 1.190 13 H -0.209 1.209 14 H -0.212 1.212 15 C -0.125 4.125 16 H 0.082 0.918 17 C 0.003 3.997 18 O -0.321 6.321 19 C -0.013 4.013 20 C -0.221 4.221 21 C -0.014 4.014 22 H 0.109 0.891 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.955 -7.150 1.004 12.298 hybrid contribution 0.823 0.878 0.325 1.247 sum -9.132 -6.272 1.329 11.158 Atomic orbital electron populations 1.22433 0.86329 1.02925 1.00726 1.62013 1.08437 1.13587 1.42777 1.22056 0.96324 0.89036 0.98878 1.21494 0.92347 1.01745 0.98446 1.18478 0.93104 0.90639 0.93080 0.98345 1.21598 0.93589 0.92142 1.48230 0.92981 1.25676 1.02213 0.95384 0.95466 1.70027 1.36218 0.97690 1.52147 0.85675 0.81454 0.78261 0.77285 1.19014 1.20894 1.21171 1.21796 0.94032 0.98753 0.97918 0.91818 1.22530 0.99993 0.93655 0.83515 1.87921 1.23006 1.79293 1.41891 1.22606 0.80941 0.99841 0.97931 1.22782 1.01414 1.00699 0.97245 1.21638 0.94790 0.97147 0.87846 0.89064 0.95279 0.91049 0.90050 0.91375 0.96200 0.92216 0.95450 0.93435 0.91848 0.90190 0.88576 0.91179 0.93372 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.31 127.69 1.19 1.78 16 2 N -0.55 -18.55 4.85 -897.31 -4.35 -22.90 16 3 C 0.06 2.56 5.18 86.34 0.45 3.01 16 4 C -0.10 -5.00 5.13 30.64 0.16 -4.84 16 5 C 0.07 3.30 1.25 -11.47 -0.01 3.29 16 6 H 0.00 -0.09 6.12 -2.39 -0.01 -0.10 16 7 C -0.52 -28.81 7.82 25.60 0.20 -28.61 16 8 H 0.05 2.84 6.96 -2.91 -0.02 2.82 16 9 C 0.01 0.58 5.30 84.66 0.45 1.03 16 10 N -0.92 -54.61 11.35 21.45 0.24 -54.37 16 11 Si 0.95 44.92 29.54 68.60 2.03 46.94 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 15 C -0.11 -4.34 2.17 -10.65 -0.02 -4.36 16 16 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 17 C 0.08 3.03 6.07 72.04 0.44 3.47 16 18 O -0.40 -15.96 10.07 -148.98 -1.50 -17.46 16 19 C 0.06 1.93 6.85 72.02 0.49 2.43 16 20 C -0.18 -5.84 4.39 30.66 0.13 -5.70 16 21 C 0.09 3.18 2.23 45.03 0.10 3.28 16 22 H 0.09 2.63 8.12 -2.39 -0.02 2.61 16 23 H 0.03 0.69 6.52 -2.39 -0.02 0.68 16 24 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 2.46 8.08 -2.39 -0.02 2.45 16 27 H 0.02 0.81 6.20 -2.39 -0.01 0.80 16 28 H 0.06 3.32 6.15 -2.39 -0.01 3.30 16 29 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 3.33 6.79 -2.39 -0.02 3.31 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.92 4.88 -2.39 -0.01 1.90 16 36 H 0.09 2.28 6.68 -2.39 -0.02 2.27 16 Total: -1.00 -63.36 264.58 1.04 -62.32 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.05 Total: 10.70 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 3.57 Total: -25.24 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -4.11 Total: -77.26 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -1.50 Total: -17.46 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -63.36 1.04 -62.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.360 kcal (2) G-P(sol) polarization free energy of solvation -63.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds