Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.45076 * 2 1 4 4 C 1.51155 * 109.44559 * 240.06731 * 2 1 3 5 5 C 1.52352 * 109.55261 * 147.29476 * 4 2 1 6 6 N 1.41108 * 114.65692 * 85.90107 * 5 4 2 7 7 C 1.46905 * 110.99973 * 171.56705 * 6 5 4 8 8 C 1.48557 * 112.14240 * 296.35991 * 6 5 4 9 9 H 1.09006 * 109.41513 * 311.40751 * 8 6 5 10 10 C 1.52992 * 109.44432 * 191.49053 * 8 6 5 11 11 C 1.50709 * 109.47201 * 176.35129 * 10 8 6 12 12 H 1.07997 * 119.99819 * 4.86787 * 11 10 8 13 13 C 1.37877 * 120.00138 * 184.86486 * 11 10 8 14 14 N 1.31516 * 119.99735 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46762 * 60.00285 * 15 13 11 17 17 H 1.48495 * 109.46794 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47066 * 300.00297 * 15 13 11 19 19 C 1.49021 * 109.63988 * 71.43508 * 8 6 5 20 20 O 1.20758 * 118.89810 * 90.36710 * 19 8 6 21 21 C 1.51739 * 122.19476 * 270.38796 * 19 8 6 22 22 H 1.09001 * 109.47139 * 299.99976 * 1 2 3 23 23 H 1.08997 * 109.47406 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46709 * 59.99755 * 1 2 3 25 25 H 1.09005 * 109.45721 * 267.36394 * 4 2 1 26 26 H 1.09006 * 109.45518 * 27.30299 * 4 2 1 27 27 H 1.09004 * 108.47303 * 324.54717 * 5 4 2 28 28 H 1.09000 * 108.44089 * 207.23192 * 5 4 2 29 29 H 1.08997 * 109.46877 * 192.06560 * 7 6 5 30 30 H 1.09000 * 109.46851 * 312.06636 * 7 6 5 31 31 H 1.09001 * 109.46963 * 72.06283 * 7 6 5 32 32 H 1.08995 * 109.47415 * 296.35504 * 10 8 6 33 33 H 1.08999 * 109.47218 * 56.35834 * 10 8 6 34 34 H 0.97004 * 119.99852 * 180.02562 * 14 13 11 35 35 H 1.09006 * 109.23665 * 280.78989 * 21 19 8 36 36 H 1.09003 * 109.23258 * 161.41984 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0332 -0.7112 -1.2352 5 6 3.3421 -0.0782 -1.6904 6 7 4.4951 -0.5923 -1.0601 7 6 5.7159 -0.0759 -1.6935 8 6 4.5002 -0.3259 0.4014 9 1 4.2675 0.7241 0.5791 10 6 5.8832 -0.6448 0.9725 11 6 5.9160 -0.2904 2.4369 12 1 5.0169 0.0469 2.9311 13 6 7.0938 -0.3968 3.1458 14 7 8.1887 -0.8071 2.5438 15 14 7.1342 0.0419 4.9611 16 1 6.1892 -0.8314 5.7025 17 1 8.5086 -0.1558 5.4876 18 1 6.7371 1.4621 5.1362 19 6 3.4784 -1.1803 1.0698 20 8 3.8033 -2.2710 1.4734 21 6 2.0432 -0.7255 1.2597 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 2.1986 -1.7640 -1.0060 26 1 1.2928 -0.6252 -2.0306 27 1 3.2927 0.9936 -1.4979 28 1 3.4415 -0.2271 -2.7656 29 1 6.5768 -0.6425 -1.3387 30 1 5.6347 -0.1779 -2.7757 31 1 5.8418 0.9758 -1.4361 32 1 6.0900 -1.7081 0.8513 33 1 6.6381 -0.0650 0.4415 34 1 9.0173 -0.8823 3.0426 35 1 1.9913 -0.0467 2.1111 36 1 1.4142 -1.5940 1.4551 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260789171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = -41.939531 kcal Electronic energy + Delta-G solvation = -16491.162180 eV Core-core repulsion = 13975.085817 eV Total energy + Delta-G solvation = -2516.076363 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89620 -37.04367 -35.57231 -33.03191 -30.70472 -28.85321 -28.19279 -25.85254 -24.36952 -21.92657 -21.53165 -20.14330 -17.98078 -16.49536 -15.94824 -15.50137 -14.89313 -14.73534 -14.36656 -13.76714 -13.57266 -13.10422 -12.82960 -12.45494 -12.23007 -12.00355 -11.77768 -11.64241 -11.33492 -11.04163 -10.96621 -10.72388 -10.57544 -10.53648 -10.32611 -10.12042 -9.52736 -9.20985 -8.61704 -8.32926 -7.75316 -5.98861 -4.00570 2.79214 3.34337 3.38640 3.41365 4.34309 4.49836 4.71796 4.85350 4.98616 5.13624 5.31010 5.38396 5.58102 5.62724 5.70232 5.74971 5.83770 5.87562 5.91885 5.99363 6.05660 6.15748 6.18134 6.28214 6.37828 6.46827 6.52605 6.80897 7.35424 7.57239 7.76004 7.84063 8.01054 8.37505 8.44310 9.02098 9.61978 11.12754 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031110 B = 0.008888 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.828311 B = 3149.483104 C = 3724.520865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.121 4.121 5 C 0.063 3.937 6 N -0.538 5.538 7 C 0.036 3.964 8 C 0.049 3.951 9 H 0.052 0.948 10 C 0.031 3.969 11 C -0.518 4.518 12 H 0.049 0.951 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.380 3.620 20 O -0.438 6.438 21 C -0.167 4.167 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.019 0.981 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.089 0.911 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.179 3.694 -7.774 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.067 4.067 6 N -0.264 5.264 7 C -0.112 4.112 8 C -0.058 4.058 9 H 0.070 0.930 10 C -0.006 4.006 11 C -0.557 4.557 12 H 0.067 0.933 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C 0.252 3.748 20 O -0.307 6.307 21 C -0.205 4.205 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.826 2.560 -7.581 14.279 hybrid contribution 0.029 1.262 1.189 1.734 sum -11.797 3.822 -6.393 13.951 Atomic orbital electron populations 1.21874 0.94822 1.01826 1.01576 1.21070 0.95649 0.99749 0.94187 0.90736 1.21388 0.96149 1.01073 0.97231 1.20925 0.90819 0.96281 0.98633 1.60054 1.02295 1.61354 1.02738 1.22343 0.92949 0.98300 0.97567 1.22364 1.00040 0.97375 0.85987 0.93007 1.19224 0.87576 0.98644 0.95150 1.21004 0.95122 1.44946 0.94632 0.93294 1.24915 0.95626 0.95201 0.98220 1.69942 1.00034 1.46826 1.36306 0.86675 0.77138 0.78835 0.85508 1.20190 1.21155 1.20280 1.24077 0.88823 0.86707 0.75175 1.90338 1.80913 1.21572 1.37892 1.22743 0.96412 1.02139 0.99182 0.92673 0.92592 0.92575 0.90819 0.91038 0.96297 0.91666 0.89890 0.92426 0.95436 0.94800 0.95009 0.92893 0.89220 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.89 37.16 0.33 -1.10 16 2 C -0.09 -1.12 2.58 -90.94 -0.23 -1.35 16 3 H 0.07 0.95 7.31 -51.93 -0.38 0.57 16 4 C -0.12 -1.58 5.03 -27.99 -0.14 -1.72 16 5 C 0.06 0.92 4.75 -7.17 -0.03 0.88 16 6 N -0.54 -9.89 4.65 -240.95 -1.12 -11.01 16 7 C 0.04 0.61 8.46 60.07 0.51 1.12 16 8 C 0.05 1.05 1.79 -68.75 -0.12 0.93 16 9 H 0.05 1.07 8.00 -51.93 -0.42 0.66 16 10 C 0.03 0.82 3.49 -27.88 -0.10 0.73 16 11 C -0.52 -14.90 8.47 -34.44 -0.29 -15.20 16 12 H 0.05 1.37 7.46 -52.49 -0.39 0.98 16 13 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 15 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.38 7.99 4.37 -29.32 -0.13 7.86 16 20 O -0.44 -11.00 16.47 6.00 0.10 -10.90 16 21 C -0.17 -2.62 5.48 -26.76 -0.15 -2.77 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 24 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 25 H 0.07 1.12 7.22 -51.93 -0.38 0.75 16 26 H 0.07 0.75 7.74 -51.93 -0.40 0.35 16 27 H 0.02 0.27 7.26 -51.93 -0.38 -0.11 16 28 H 0.06 0.84 7.76 -51.93 -0.40 0.43 16 29 H 0.08 1.59 6.65 -51.93 -0.35 1.24 16 30 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.03 1.01 7.66 -51.93 -0.40 0.61 16 33 H 0.03 0.86 6.28 -51.93 -0.33 0.53 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.24 7.96 -51.93 -0.41 0.82 16 LS Contribution 282.09 15.07 4.25 4.25 Total: -1.00 -32.13 282.09 -7.39 -39.52 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.88 Total: -3.67 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.46 Total: -8.91 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.38 Total: -37.39 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.10 Total: -10.90 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.13 -7.39 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260789171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.422 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds