Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.45076 * 2 1 4 4 C 1.51155 * 109.44559 * 240.06731 * 2 1 3 5 5 C 1.52352 * 109.55261 * 147.29476 * 4 2 1 6 6 N 1.41108 * 114.65692 * 85.90107 * 5 4 2 7 7 C 1.46905 * 110.99973 * 171.56705 * 6 5 4 8 8 C 1.48557 * 112.14240 * 296.35991 * 6 5 4 9 9 H 1.09006 * 109.41513 * 311.40751 * 8 6 5 10 10 C 1.52992 * 109.44432 * 191.49053 * 8 6 5 11 11 C 1.50709 * 109.47201 * 176.35129 * 10 8 6 12 12 H 1.07997 * 119.99819 * 4.86787 * 11 10 8 13 13 C 1.37877 * 120.00138 * 184.86486 * 11 10 8 14 14 N 1.31516 * 119.99735 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00024 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46762 * 60.00285 * 15 13 11 17 17 H 1.48495 * 109.46794 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47066 * 300.00297 * 15 13 11 19 19 C 1.49021 * 109.63988 * 71.43508 * 8 6 5 20 20 O 1.20758 * 118.89810 * 90.36710 * 19 8 6 21 21 C 1.51739 * 122.19476 * 270.38796 * 19 8 6 22 22 H 1.09001 * 109.47139 * 299.99976 * 1 2 3 23 23 H 1.08997 * 109.47406 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46709 * 59.99755 * 1 2 3 25 25 H 1.09005 * 109.45721 * 267.36394 * 4 2 1 26 26 H 1.09006 * 109.45518 * 27.30299 * 4 2 1 27 27 H 1.09004 * 108.47303 * 324.54717 * 5 4 2 28 28 H 1.09000 * 108.44089 * 207.23192 * 5 4 2 29 29 H 1.08997 * 109.46877 * 192.06560 * 7 6 5 30 30 H 1.09000 * 109.46851 * 312.06636 * 7 6 5 31 31 H 1.09001 * 109.46963 * 72.06283 * 7 6 5 32 32 H 1.08995 * 109.47415 * 296.35504 * 10 8 6 33 33 H 1.08999 * 109.47218 * 56.35834 * 10 8 6 34 34 H 0.97004 * 119.99852 * 180.02562 * 14 13 11 35 35 H 1.09006 * 109.23665 * 280.78989 * 21 19 8 36 36 H 1.09003 * 109.23258 * 161.41984 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0332 -0.7112 -1.2352 5 6 3.3421 -0.0782 -1.6904 6 7 4.4951 -0.5923 -1.0601 7 6 5.7159 -0.0759 -1.6935 8 6 4.5002 -0.3259 0.4014 9 1 4.2675 0.7241 0.5791 10 6 5.8832 -0.6448 0.9725 11 6 5.9160 -0.2904 2.4369 12 1 5.0169 0.0469 2.9311 13 6 7.0938 -0.3968 3.1458 14 7 8.1887 -0.8071 2.5438 15 14 7.1342 0.0419 4.9611 16 1 6.1892 -0.8314 5.7025 17 1 8.5086 -0.1558 5.4876 18 1 6.7371 1.4621 5.1362 19 6 3.4784 -1.1803 1.0698 20 8 3.8033 -2.2710 1.4734 21 6 2.0432 -0.7255 1.2597 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 2.1986 -1.7640 -1.0060 26 1 1.2928 -0.6252 -2.0306 27 1 3.2927 0.9936 -1.4979 28 1 3.4415 -0.2271 -2.7656 29 1 6.5768 -0.6425 -1.3387 30 1 5.6347 -0.1779 -2.7757 31 1 5.8418 0.9758 -1.4361 32 1 6.0900 -1.7081 0.8513 33 1 6.6381 -0.0650 0.4415 34 1 9.0173 -0.8823 3.0426 35 1 1.9913 -0.0467 2.1111 36 1 1.4142 -1.5940 1.4551 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260789171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = -63.990388 kcal Electronic energy + Delta-G solvation = -16492.118377 eV Core-core repulsion = 13975.085817 eV Total energy + Delta-G solvation = -2517.032560 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.42115 -38.60440 -36.82916 -35.12282 -32.48236 -30.12632 -29.63206 -27.46746 -25.95678 -23.47054 -23.07393 -21.32972 -19.57626 -18.62470 -17.44458 -16.98696 -16.48865 -16.28148 -16.06390 -15.22392 -14.93557 -14.34647 -14.23372 -14.11943 -13.80993 -13.52418 -13.16328 -12.90406 -12.87029 -12.78923 -12.54846 -12.40447 -12.17802 -11.84178 -11.51310 -11.50134 -11.42058 -11.17513 -10.60006 -10.29216 -9.19239 -8.23180 -6.33510 1.15365 1.34755 1.39173 1.46208 2.36734 2.95999 3.11211 3.36798 3.79135 3.86700 3.99508 4.09431 4.26884 4.43509 4.48152 4.60528 4.63548 4.66338 4.76185 4.86371 4.92341 5.02955 5.05810 5.09973 5.19072 5.21915 5.35008 5.41293 5.51697 5.58021 5.70010 5.97110 6.19159 6.44224 6.78499 6.80294 7.33996 8.89085 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031110 B = 0.008888 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.828311 B = 3149.483104 C = 3724.520865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 H 0.080 0.920 4 C -0.118 4.118 5 C 0.054 3.946 6 N -0.551 5.551 7 C 0.038 3.962 8 C 0.053 3.947 9 H 0.061 0.939 10 C 0.042 3.958 11 C -0.538 4.538 12 H 0.053 0.947 13 C 0.003 3.997 14 N -0.929 5.929 15 Si 0.961 3.039 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.259 1.259 19 C 0.378 3.622 20 O -0.493 6.493 21 C -0.160 4.160 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.031 0.969 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.028 0.972 32 H -0.015 1.015 33 H 0.016 0.984 34 H 0.264 0.736 35 H 0.103 0.897 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.575 5.364 -8.082 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 H 0.098 0.902 4 C -0.156 4.156 5 C -0.074 4.074 6 N -0.277 5.277 7 C -0.109 4.109 8 C -0.054 4.054 9 H 0.079 0.921 10 C 0.005 3.995 11 C -0.576 4.576 12 H 0.071 0.929 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.785 3.215 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.183 1.183 19 C 0.254 3.746 20 O -0.367 6.367 21 C -0.197 4.197 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.125 0.875 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.004 0.996 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.246 4.260 -7.912 16.843 hybrid contribution 0.808 0.723 1.201 1.618 sum -13.438 4.983 -6.711 15.825 Atomic orbital electron populations 1.21835 0.92144 1.02461 1.03057 1.21107 0.97738 0.99264 0.92076 0.90164 1.21437 0.96267 0.99292 0.98609 1.21135 0.89774 0.96902 0.99628 1.60057 1.04256 1.62406 1.01030 1.22314 0.91502 0.97557 0.99542 1.22130 0.97203 0.97833 0.88283 0.92076 1.18948 0.90667 0.95098 0.94762 1.21412 0.95404 1.44850 0.95928 0.92898 1.25898 0.95217 0.94990 1.03382 1.70084 1.00700 1.47801 1.38332 0.85564 0.77384 0.79367 0.79179 1.20001 1.20434 1.18300 1.24781 0.91136 0.85536 0.73191 1.90321 1.82288 1.23777 1.40283 1.22742 0.92357 1.03064 1.01579 0.91888 0.92402 0.90483 0.93333 0.87503 0.95086 0.89224 0.93388 0.88674 0.95310 0.99641 0.96607 0.92702 0.87932 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.89 71.98 0.64 -1.51 16 2 C -0.08 -1.85 2.58 -11.00 -0.03 -1.87 16 3 H 0.08 1.73 7.31 -2.39 -0.02 1.71 16 4 C -0.12 -2.75 5.03 29.78 0.15 -2.60 16 5 C 0.05 1.43 4.75 87.14 0.41 1.85 16 6 N -0.55 -20.10 4.65 -916.23 -4.26 -24.36 16 7 C 0.04 1.30 8.46 127.69 1.08 2.38 16 8 C 0.05 2.30 1.79 43.33 0.08 2.38 16 9 H 0.06 2.51 8.00 -2.38 -0.02 2.49 16 10 C 0.04 2.36 3.49 29.85 0.10 2.47 16 11 C -0.54 -31.80 8.47 25.60 0.22 -31.58 16 12 H 0.05 3.00 7.46 -2.91 -0.02 2.98 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 15 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 16 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 C 0.38 16.06 4.37 28.91 0.13 16.19 16 20 O -0.49 -25.84 16.47 -1.44 -0.02 -25.86 16 21 C -0.16 -4.76 5.48 30.57 0.17 -4.59 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 24 H 0.08 0.93 8.10 -2.39 -0.02 0.91 16 25 H 0.05 1.40 7.22 -2.38 -0.02 1.38 16 26 H 0.11 1.75 7.74 -2.38 -0.02 1.73 16 27 H 0.03 0.77 7.26 -2.39 -0.02 0.75 16 28 H 0.09 1.96 7.76 -2.39 -0.02 1.94 16 29 H 0.05 1.94 6.65 -2.39 -0.02 1.93 16 30 H 0.09 2.49 7.79 -2.39 -0.02 2.47 16 31 H 0.03 0.95 8.12 -2.39 -0.02 0.94 16 32 H -0.01 -0.96 7.66 -2.39 -0.02 -0.97 16 33 H 0.02 0.90 6.28 -2.39 -0.01 0.89 16 34 H 0.26 15.58 8.31 -92.71 -0.77 14.80 16 35 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 36 H 0.09 2.57 7.96 -2.39 -0.02 2.55 16 Total: -1.00 -73.32 282.09 2.48 -70.85 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.04 Total: 5.91 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 3.41 Total: -16.24 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -3.97 Total: -82.45 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.02 Total: -25.86 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -73.32 2.48 -70.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260789171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.856 kcal (2) G-P(sol) polarization free energy of solvation -73.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds