Wall clock time and date at job start Mon Mar 30 2020 02:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.44000 * 2 1 4 4 C 1.51153 * 109.44159 * 119.93288 * 2 1 3 5 5 C 1.52397 * 109.56433 * 212.66735 * 4 2 1 6 6 N 1.41103 * 114.68609 * 274.15852 * 5 4 2 7 7 C 1.46903 * 110.99942 * 188.41154 * 6 5 4 8 8 C 1.48565 * 112.14079 * 63.61756 * 6 5 4 9 9 H 1.08994 * 109.44643 * 48.58030 * 8 6 5 10 10 C 1.52999 * 109.44364 * 168.51260 * 8 6 5 11 11 C 1.50700 * 109.47232 * 185.43273 * 10 8 6 12 12 H 1.07999 * 119.99961 * 5.12891 * 11 10 8 13 13 C 1.37883 * 119.99840 * 185.13444 * 11 10 8 14 14 N 1.31507 * 120.00017 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99850 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47137 * 59.99841 * 15 13 11 17 17 H 1.48493 * 109.47193 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47190 * 300.00025 * 15 13 11 19 19 C 1.49020 * 109.63612 * 288.56019 * 8 6 5 20 20 O 1.20756 * 118.90375 * 269.63339 * 19 8 6 21 21 C 1.51742 * 122.19030 * 89.63999 * 19 8 6 22 22 H 1.09007 * 109.47449 * 300.06405 * 1 2 3 23 23 H 1.08996 * 109.47226 * 60.06949 * 1 2 3 24 24 H 1.09006 * 109.47589 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.45508 * 92.64255 * 4 2 1 26 26 H 1.08995 * 109.45936 * 332.69938 * 4 2 1 27 27 H 1.08994 * 108.44025 * 152.80789 * 5 4 2 28 28 H 1.09004 * 108.43425 * 35.50738 * 5 4 2 29 29 H 1.09004 * 109.47063 * 287.87087 * 7 6 5 30 30 H 1.08998 * 109.47309 * 47.87046 * 7 6 5 31 31 H 1.09003 * 109.46901 * 167.87205 * 7 6 5 32 32 H 1.09010 * 109.46716 * 305.42934 * 10 8 6 33 33 H 1.09001 * 109.47191 * 65.42654 * 10 8 6 34 34 H 0.97000 * 120.00325 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.22508 * 198.55294 * 21 19 8 36 36 H 1.08995 * 109.23137 * 79.18888 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 6 2.0331 -0.7112 1.2352 5 6 3.3429 -0.0789 1.6903 6 7 4.4958 -0.5924 1.0593 7 6 5.7166 -0.0762 1.6926 8 6 4.5002 -0.3253 -0.4021 9 1 4.2672 0.7245 -0.5798 10 6 5.8831 -0.6438 -0.9738 11 6 5.9292 -0.2480 -2.4272 12 1 5.0892 0.2623 -2.8748 13 6 7.0437 -0.5375 -3.1856 14 7 8.0668 -1.1586 -2.6404 15 14 7.1005 -0.0476 -4.9872 16 1 6.9599 1.4261 -5.1041 17 1 8.3975 -0.4697 -5.5743 18 1 5.9890 -0.7102 -5.7156 19 6 3.4784 -1.1796 -1.0704 20 8 3.8033 -2.2701 -1.4747 21 6 2.0432 -0.7247 -1.2601 22 1 -0.3634 0.5148 0.8894 23 1 -0.3633 0.5127 -0.8906 24 1 -0.3634 -1.0277 0.0005 25 1 2.1986 -1.7639 1.0059 26 1 1.2928 -0.6253 2.0306 27 1 3.4427 -0.2284 2.7654 28 1 3.2932 0.9930 1.4983 29 1 5.8429 0.9753 1.4348 30 1 5.6354 -0.1778 2.7748 31 1 6.5774 -0.6432 1.3381 32 1 6.6413 -0.0881 -0.4218 33 1 6.0770 -1.7125 -0.8819 34 1 8.8507 -1.3626 -3.1740 35 1 1.4143 -1.5933 -1.4559 36 1 1.9913 -0.0456 -2.1110 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260789173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:43 Heat of formation + Delta-G solvation = -63.796050 kcal Electronic energy + Delta-G solvation = -16496.560302 eV Core-core repulsion = 13979.536170 eV Total energy + Delta-G solvation = -2517.024133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.41204 -38.59961 -36.82841 -35.11857 -32.48018 -30.12133 -29.63435 -27.46662 -25.95670 -23.46690 -23.06705 -21.32709 -19.56164 -18.63867 -17.44838 -16.97120 -16.49638 -16.27957 -16.05755 -15.22059 -14.93726 -14.34017 -14.23310 -14.11306 -13.80091 -13.52225 -13.16768 -12.90421 -12.87224 -12.79417 -12.52859 -12.41533 -12.16464 -11.82479 -11.51751 -11.50330 -11.41357 -11.16958 -10.59760 -10.28755 -9.18728 -8.22581 -6.33285 1.16503 1.34699 1.39263 1.46119 2.36815 2.96861 3.11374 3.37194 3.79310 3.86877 3.99808 4.09466 4.26661 4.43727 4.48689 4.60717 4.63863 4.66519 4.76357 4.86555 4.92419 5.02633 5.05861 5.10010 5.19240 5.21949 5.35784 5.41371 5.51667 5.59716 5.70315 5.96990 6.19616 6.44686 6.79876 6.81655 7.34482 8.89780 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.008907 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.582327 B = 3142.800462 C = 3708.032145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 H 0.080 0.920 4 C -0.119 4.119 5 C 0.054 3.946 6 N -0.551 5.551 7 C 0.038 3.962 8 C 0.053 3.947 9 H 0.062 0.938 10 C 0.041 3.959 11 C -0.539 4.539 12 H 0.055 0.945 13 C 0.003 3.997 14 N -0.929 5.929 15 Si 0.961 3.039 16 H -0.258 1.258 17 H -0.280 1.280 18 H -0.274 1.274 19 C 0.378 3.622 20 O -0.494 6.494 21 C -0.160 4.160 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.011 0.989 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.373 5.962 8.243 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.074 4.074 6 N -0.278 5.278 7 C -0.109 4.109 8 C -0.054 4.054 9 H 0.079 0.921 10 C 0.004 3.996 11 C -0.578 4.578 12 H 0.074 0.926 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.785 3.215 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.199 1.199 19 C 0.254 3.746 20 O -0.367 6.367 21 C -0.197 4.197 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.125 0.875 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.054 4.825 8.065 16.906 hybrid contribution 0.800 0.704 -1.207 1.610 sum -13.254 5.529 6.858 15.914 Atomic orbital electron populations 1.21837 0.92158 1.02448 1.03061 1.21103 0.97728 0.99273 0.92054 0.90124 1.21443 0.96288 0.99282 0.98610 1.21136 0.89760 0.96912 0.99606 1.60047 1.04276 1.62459 1.01038 1.22319 0.91496 0.97591 0.99529 1.22125 0.97224 0.97801 0.88253 0.92059 1.18971 0.90507 0.95497 0.94649 1.21437 1.01873 1.37970 0.96478 0.92635 1.25915 0.95289 0.94903 1.03427 1.70089 1.06579 1.41941 1.38320 0.85561 0.77457 0.79352 0.79100 1.18274 1.20556 1.19884 1.24781 0.91134 0.85536 0.73194 1.90324 1.82278 1.23850 1.40263 1.22739 0.92366 1.03047 1.01582 0.90455 0.91894 0.92435 0.93391 0.87498 0.89232 0.95052 0.95211 0.88698 0.93372 0.97049 0.99060 0.92759 0.89164 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.89 71.98 0.64 -1.52 16 2 C -0.08 -1.84 2.58 -11.00 -0.03 -1.87 16 3 H 0.08 1.73 7.32 -2.39 -0.02 1.71 16 4 C -0.12 -2.76 5.04 29.79 0.15 -2.61 16 5 C 0.05 1.43 4.75 87.16 0.41 1.85 16 6 N -0.55 -20.10 4.65 -916.13 -4.26 -24.36 16 7 C 0.04 1.28 8.46 127.69 1.08 2.36 16 8 C 0.05 2.32 1.76 43.33 0.08 2.39 16 9 H 0.06 2.50 8.00 -2.39 -0.02 2.48 16 10 C 0.04 2.28 3.56 29.85 0.11 2.39 16 11 C -0.54 -31.82 8.46 25.60 0.22 -31.60 16 12 H 0.06 3.11 7.69 -2.91 -0.02 3.09 16 13 C 0.00 0.17 5.46 84.66 0.46 0.63 16 14 N -0.93 -58.87 13.29 21.45 0.28 -58.58 16 15 Si 0.96 45.85 29.54 68.60 2.03 47.87 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 19 C 0.38 16.16 4.57 28.92 0.13 16.29 16 20 O -0.49 -26.14 16.49 -1.44 -0.02 -26.17 16 21 C -0.16 -4.78 5.48 30.57 0.17 -4.62 16 22 H 0.08 0.93 8.10 -2.38 -0.02 0.92 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.90 8.13 -2.38 -0.02 0.88 16 25 H 0.05 1.39 7.22 -2.39 -0.02 1.37 16 26 H 0.11 1.76 7.74 -2.39 -0.02 1.74 16 27 H 0.09 1.96 7.76 -2.39 -0.02 1.94 16 28 H 0.03 0.77 7.27 -2.38 -0.02 0.76 16 29 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16 30 H 0.09 2.46 7.79 -2.39 -0.02 2.44 16 31 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 32 H 0.01 0.65 6.17 -2.38 -0.01 0.63 16 33 H -0.01 -0.59 7.59 -2.39 -0.02 -0.61 16 34 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.09 2.58 7.96 -2.38 -0.02 2.56 16 36 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -73.81 282.36 2.48 -71.33 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.04 Total: 6.22 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 3.42 Total: -16.31 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -3.97 Total: -82.94 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.02 Total: -26.17 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -73.81 2.48 -71.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260789173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.531 kcal (2) G-P(sol) polarization free energy of solvation -73.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds