Wall clock time and date at job start Mon Mar 30 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 108.28428 * 2 1 4 4 C 1.52344 * 108.48910 * 242.44847 * 2 1 3 5 5 C 1.50175 * 105.28687 * 148.15613 * 4 2 1 6 6 N 1.48846 * 110.59880 * 98.96120 * 5 4 2 7 7 C 1.46899 * 110.99968 * 196.57214 * 6 5 4 8 8 C 1.48634 * 112.06463 * 321.30781 * 6 5 4 9 9 H 1.09008 * 107.93333 * 80.07524 * 8 6 5 10 10 C 1.52997 * 107.96435 * 196.35586 * 8 6 5 11 11 C 1.50701 * 109.47212 * 302.22918 * 10 8 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.47911 * 116.89116 * 318.22958 * 8 6 5 20 20 O 1.20757 * 120.74544 * 269.14707 * 19 8 6 21 21 C 1.46615 * 108.49023 * 117.55709 * 2 1 3 22 22 H 1.08995 * 109.46688 * 302.44279 * 1 2 3 23 23 H 1.09000 * 109.46989 * 62.44085 * 1 2 3 24 24 H 1.08997 * 109.46668 * 182.44213 * 1 2 3 25 25 H 1.08999 * 110.27003 * 267.09902 * 4 2 1 26 26 H 1.09006 * 110.27177 * 29.21196 * 4 2 1 27 27 H 1.09008 * 109.24798 * 219.24257 * 5 4 2 28 28 H 1.08997 * 109.25492 * 338.70595 * 5 4 2 29 29 H 1.08992 * 109.47153 * 185.33597 * 7 6 5 30 30 H 1.09006 * 109.46989 * 305.34039 * 7 6 5 31 31 H 1.09004 * 109.46904 * 65.33370 * 7 6 5 32 32 H 1.09002 * 109.47153 * 182.22920 * 10 8 6 33 33 H 1.09001 * 109.46832 * 62.23110 * 10 8 6 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.09005 * 110.05470 * 60.07539 * 21 2 1 36 36 H 1.08998 * 110.14580 * 298.58165 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8720 1.0350 0.0000 4 6 2.0132 -0.6683 -1.2810 5 6 3.3058 0.0162 -1.6214 6 7 4.4655 -0.8009 -1.1709 7 6 5.6938 0.0039 -1.1336 8 6 4.2143 -1.4506 0.1421 9 1 3.6063 -2.3382 -0.0334 10 6 5.5602 -1.9097 0.7066 11 6 6.2217 -2.8466 -0.2710 12 1 5.7315 -3.0899 -1.2020 13 6 7.4534 -3.3923 0.0228 14 7 8.0506 -3.0955 1.1563 15 14 8.2737 -4.5530 -1.1893 16 1 8.4915 -3.8493 -2.4787 17 1 9.5800 -4.9987 -0.6413 18 1 7.4016 -5.7344 -1.4111 19 6 3.5411 -0.6335 1.1750 20 8 4.1838 0.0262 1.9560 21 6 1.9950 -0.6433 1.2327 22 1 -0.3632 0.5513 0.8673 23 1 -0.3633 0.4755 -0.9111 24 1 -0.3632 -1.0267 0.0438 25 1 2.1820 -1.7317 -1.1116 26 1 1.2865 -0.5224 -2.0803 27 1 3.3639 0.1581 -2.7006 28 1 3.3386 0.9879 -1.1289 29 1 6.5414 -0.6377 -0.8934 30 1 5.8537 0.4681 -2.1069 31 1 5.5974 0.7788 -0.3730 32 1 5.4001 -2.4259 1.6532 33 1 6.2006 -1.0428 0.8693 34 1 8.9170 -3.4797 1.3631 35 1 1.6291 -1.6690 1.2801 36 1 1.6498 -0.0832 2.1017 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260789176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:47 Heat of formation + Delta-G solvation = -32.811195 kcal Electronic energy + Delta-G solvation = -16585.812436 eV Core-core repulsion = 14070.131908 eV Total energy + Delta-G solvation = -2515.680528 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18897 -37.08307 -35.67015 -32.83864 -30.76152 -28.87419 -28.24312 -25.79500 -23.94866 -22.11852 -21.56205 -20.13900 -18.00895 -16.57824 -15.77804 -15.34774 -15.12779 -14.74585 -14.31107 -13.81984 -13.63848 -13.15403 -13.00840 -12.49530 -12.21904 -12.04090 -11.75937 -11.51832 -11.06181 -10.98145 -10.84585 -10.77614 -10.58717 -10.45077 -10.36580 -9.97757 -9.63031 -9.11008 -8.90229 -8.31289 -7.51242 -5.93431 -3.94164 2.42061 3.38648 3.42929 3.45947 4.34614 4.44614 4.55003 4.78002 5.00994 5.03165 5.36432 5.42314 5.49988 5.57582 5.63063 5.73163 5.83950 5.87979 6.01361 6.07053 6.14514 6.17889 6.22545 6.28124 6.39201 6.46083 6.74495 7.05227 7.40653 7.68429 7.74780 7.82069 8.04549 8.07025 8.48054 9.13980 9.68087 11.17746 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039028 B = 0.008069 C = 0.007582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.259848 B = 3469.397299 C = 3692.304986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.066 0.934 4 C -0.122 4.122 5 C 0.036 3.964 6 N -0.486 5.486 7 C 0.015 3.985 8 C 0.031 3.969 9 H 0.089 0.911 10 C 0.026 3.974 11 C -0.503 4.503 12 H 0.068 0.932 13 C 0.053 3.947 14 N -0.898 5.898 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.278 1.278 19 C 0.340 3.660 20 O -0.450 6.450 21 C -0.161 4.161 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.013 0.987 32 H 0.018 0.982 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.093 0.907 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.077 5.269 -4.281 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.084 0.916 4 C -0.159 4.159 5 C -0.092 4.092 6 N -0.212 5.212 7 C -0.132 4.132 8 C -0.077 4.077 9 H 0.107 0.893 10 C -0.011 4.011 11 C -0.541 4.541 12 H 0.086 0.914 13 C -0.147 4.147 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.204 1.204 19 C 0.212 3.788 20 O -0.320 6.320 21 C -0.200 4.200 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.130 0.870 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.488 5.231 -4.086 14.142 hybrid contribution 0.299 0.002 0.027 0.301 sum -12.188 5.233 -4.059 13.871 Atomic orbital electron populations 1.21984 0.94934 1.01955 1.01527 1.20061 0.96432 1.00127 0.94598 0.91562 1.21320 0.96480 1.01837 0.96278 1.22411 0.91157 0.94789 1.00814 1.63579 1.01978 1.31856 1.23802 1.22655 0.95079 0.96736 0.98773 1.22188 1.01658 0.96447 0.87446 0.89279 1.19376 0.88713 0.97123 0.95938 1.21146 1.02901 1.25986 1.04071 0.91400 1.25044 0.97512 0.96875 0.95300 1.69982 1.16087 1.44608 1.23065 0.86644 0.78452 0.81351 0.81434 1.20221 1.21627 1.20359 1.26061 0.90957 0.77972 0.83849 1.90338 1.68912 1.34489 1.38278 1.21862 0.95737 1.03260 0.99110 0.92995 0.92580 0.92394 0.89319 0.90663 0.91005 0.95166 0.86978 0.93004 0.96789 0.96368 0.95023 0.93054 0.88899 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.90 37.16 0.33 -1.06 16 2 C -0.09 -1.14 2.06 -94.00 -0.19 -1.33 16 3 H 0.07 0.86 6.88 -51.93 -0.36 0.51 16 4 C -0.12 -1.53 5.23 -28.47 -0.15 -1.68 16 5 C 0.04 0.54 5.29 -4.15 -0.02 0.52 16 6 N -0.49 -9.36 4.58 -236.48 -1.08 -10.45 16 7 C 0.02 0.31 8.28 60.06 0.50 0.81 16 8 C 0.03 0.64 1.50 -69.22 -0.10 0.53 16 9 H 0.09 1.76 6.83 -51.92 -0.35 1.41 16 10 C 0.03 0.66 3.34 -27.88 -0.09 0.57 16 11 C -0.50 -13.78 7.16 -34.44 -0.25 -14.02 16 12 H 0.07 1.83 7.57 -52.49 -0.40 1.43 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 15 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 C 0.34 6.53 5.75 -28.29 -0.16 6.36 16 20 O -0.45 -10.26 16.93 6.00 0.10 -10.16 16 21 C -0.16 -2.26 5.20 -28.87 -0.15 -2.41 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.48 7.97 -51.93 -0.41 0.06 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 1.21 6.20 -51.93 -0.32 0.89 16 26 H 0.07 0.78 7.70 -51.93 -0.40 0.38 16 27 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.03 0.46 6.63 -51.93 -0.34 0.12 16 29 H 0.11 2.66 5.14 -51.93 -0.27 2.40 16 30 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.02 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.03 0.90 6.26 -51.93 -0.33 0.57 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 278.43 15.07 4.20 4.20 Total: -1.00 -30.89 278.43 -7.16 -38.05 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.70 Total: -1.68 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.39 Total: -10.30 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.35 Total: -36.75 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.10 Total: -10.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.89 -7.16 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260789176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.240 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds