Wall clock time and date at job start Mon Mar 30 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 108.28428 * 2 1 4 4 C 1.52344 * 108.48910 * 242.44847 * 2 1 3 5 5 C 1.50175 * 105.28687 * 148.15613 * 4 2 1 6 6 N 1.48846 * 110.59880 * 98.96120 * 5 4 2 7 7 C 1.46899 * 110.99968 * 196.57214 * 6 5 4 8 8 C 1.48634 * 112.06463 * 321.30781 * 6 5 4 9 9 H 1.09008 * 107.93333 * 80.07524 * 8 6 5 10 10 C 1.52997 * 107.96435 * 196.35586 * 8 6 5 11 11 C 1.50701 * 109.47212 * 302.22918 * 10 8 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.47911 * 116.89116 * 318.22958 * 8 6 5 20 20 O 1.20757 * 120.74544 * 269.14707 * 19 8 6 21 21 C 1.46615 * 108.49023 * 117.55709 * 2 1 3 22 22 H 1.08995 * 109.46688 * 302.44279 * 1 2 3 23 23 H 1.09000 * 109.46989 * 62.44085 * 1 2 3 24 24 H 1.08997 * 109.46668 * 182.44213 * 1 2 3 25 25 H 1.08999 * 110.27003 * 267.09902 * 4 2 1 26 26 H 1.09006 * 110.27177 * 29.21196 * 4 2 1 27 27 H 1.09008 * 109.24798 * 219.24257 * 5 4 2 28 28 H 1.08997 * 109.25492 * 338.70595 * 5 4 2 29 29 H 1.08992 * 109.47153 * 185.33597 * 7 6 5 30 30 H 1.09006 * 109.46989 * 305.34039 * 7 6 5 31 31 H 1.09004 * 109.46904 * 65.33370 * 7 6 5 32 32 H 1.09002 * 109.47153 * 182.22920 * 10 8 6 33 33 H 1.09001 * 109.46832 * 62.23110 * 10 8 6 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.09005 * 110.05470 * 60.07539 * 21 2 1 36 36 H 1.08998 * 110.14580 * 298.58165 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8720 1.0350 0.0000 4 6 2.0132 -0.6683 -1.2810 5 6 3.3058 0.0162 -1.6214 6 7 4.4655 -0.8009 -1.1709 7 6 5.6938 0.0039 -1.1336 8 6 4.2143 -1.4506 0.1421 9 1 3.6063 -2.3382 -0.0334 10 6 5.5602 -1.9097 0.7066 11 6 6.2217 -2.8466 -0.2710 12 1 5.7315 -3.0899 -1.2020 13 6 7.4534 -3.3923 0.0228 14 7 8.0506 -3.0955 1.1563 15 14 8.2737 -4.5530 -1.1893 16 1 8.4915 -3.8493 -2.4787 17 1 9.5800 -4.9987 -0.6413 18 1 7.4016 -5.7344 -1.4111 19 6 3.5411 -0.6335 1.1750 20 8 4.1838 0.0262 1.9560 21 6 1.9950 -0.6433 1.2327 22 1 -0.3632 0.5513 0.8673 23 1 -0.3633 0.4755 -0.9111 24 1 -0.3632 -1.0267 0.0438 25 1 2.1820 -1.7317 -1.1116 26 1 1.2865 -0.5224 -2.0803 27 1 3.3639 0.1581 -2.7006 28 1 3.3386 0.9879 -1.1289 29 1 6.5414 -0.6377 -0.8934 30 1 5.8537 0.4681 -2.1069 31 1 5.5974 0.7788 -0.3730 32 1 5.4001 -2.4259 1.6532 33 1 6.2006 -1.0428 0.8693 34 1 8.9170 -3.4797 1.3631 35 1 1.6291 -1.6690 1.2801 36 1 1.6498 -0.0832 2.1017 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260789176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:47 Heat of formation + Delta-G solvation = -53.802079 kcal Electronic energy + Delta-G solvation = -16586.722669 eV Core-core repulsion = 14070.131908 eV Total energy + Delta-G solvation = -2516.590761 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.65224 -38.51503 -37.09476 -34.83728 -32.43691 -30.20437 -29.66957 -27.43632 -25.56989 -23.55103 -23.20150 -21.22364 -19.59941 -18.53460 -17.32722 -16.91328 -16.73793 -16.18773 -16.01341 -15.14211 -15.01576 -14.74360 -14.26712 -14.12838 -13.81198 -13.23302 -13.03076 -12.96056 -12.71176 -12.63446 -12.49034 -12.32964 -12.02615 -11.96356 -11.49703 -11.44987 -11.37666 -11.21550 -10.53478 -10.51362 -9.05755 -8.12829 -6.21135 0.88291 1.43885 1.47087 1.54746 2.45734 2.97793 3.06018 3.22416 3.72322 3.88833 4.00981 4.16876 4.23544 4.40342 4.49331 4.65662 4.68677 4.73764 4.74393 4.84118 4.94942 4.97852 5.08254 5.21207 5.24801 5.32178 5.35400 5.41943 5.48798 5.57215 5.83053 6.07518 6.20904 6.30732 6.55699 6.94539 7.46039 8.99415 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039028 B = 0.008069 C = 0.007582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.259848 B = 3469.397299 C = 3692.304986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.057 0.943 4 C -0.117 4.117 5 C 0.034 3.966 6 N -0.496 5.496 7 C 0.025 3.975 8 C 0.038 3.962 9 H 0.103 0.897 10 C 0.034 3.966 11 C -0.503 4.503 12 H 0.075 0.925 13 C -0.006 4.006 14 N -0.942 5.942 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.291 1.291 18 H -0.265 1.265 19 C 0.335 3.665 20 O -0.498 6.498 21 C -0.145 4.145 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.081 0.919 31 H -0.001 1.001 32 H -0.020 1.020 33 H -0.005 1.005 34 H 0.260 0.740 35 H 0.116 0.884 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.636 4.913 -6.467 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.075 0.925 4 C -0.154 4.154 5 C -0.092 4.092 6 N -0.222 5.222 7 C -0.123 4.123 8 C -0.071 4.071 9 H 0.121 0.879 10 C -0.003 4.003 11 C -0.541 4.541 12 H 0.093 0.907 13 C -0.202 4.202 14 N -0.583 5.583 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.217 1.217 18 H -0.190 1.190 19 C 0.211 3.789 20 O -0.372 6.372 21 C -0.183 4.183 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.127 0.873 27 H 0.111 0.889 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.017 0.983 32 H -0.002 1.002 33 H 0.013 0.987 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.084 4.871 -6.297 17.056 hybrid contribution 1.093 0.155 0.703 1.309 sum -13.990 5.026 -5.594 15.884 Atomic orbital electron populations 1.21914 0.92041 1.03007 1.02674 1.20051 0.98720 0.99169 0.93335 0.92467 1.21366 0.95697 1.00894 0.97481 1.22605 0.90558 0.94229 1.01824 1.63574 1.03256 1.32886 1.22472 1.22441 0.94470 0.95573 0.99811 1.22050 0.98631 0.97760 0.88624 0.87939 1.19138 0.91459 0.95195 0.94475 1.21421 1.03010 1.25510 1.04165 0.90721 1.25986 0.98364 0.98773 0.97091 1.70148 1.16551 1.46255 1.25392 0.85498 0.77222 0.79256 0.79022 1.19127 1.21706 1.19020 1.26633 0.93936 0.76246 0.82132 1.90326 1.70652 1.36409 1.39767 1.21878 0.90373 1.05184 1.00845 0.92502 0.90987 0.91315 0.90084 0.87260 0.88904 0.95458 0.91214 0.89992 0.98272 1.00185 0.98678 0.93163 0.86610 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.90 71.98 0.64 -1.35 16 2 C -0.09 -1.98 2.06 -12.98 -0.03 -2.00 16 3 H 0.06 1.34 6.88 -2.39 -0.02 1.32 16 4 C -0.12 -2.49 5.23 29.47 0.15 -2.34 16 5 C 0.03 0.95 5.29 85.02 0.45 1.40 16 6 N -0.50 -18.76 4.58 -902.08 -4.13 -22.89 16 7 C 0.03 1.05 8.28 127.69 1.06 2.11 16 8 C 0.04 1.57 1.50 42.98 0.06 1.64 16 9 H 0.10 3.97 6.83 -2.38 -0.02 3.95 16 10 C 0.03 1.89 3.34 29.85 0.10 1.99 16 11 C -0.50 -28.26 7.16 25.60 0.18 -28.07 16 12 H 0.07 4.02 7.57 -2.91 -0.02 4.00 16 13 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 14 N -0.94 -59.10 13.29 21.45 0.28 -58.81 16 15 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 C 0.34 12.99 5.75 29.58 0.17 13.16 16 20 O -0.50 -23.73 16.93 -1.44 -0.02 -23.76 16 21 C -0.14 -3.72 5.20 29.21 0.15 -3.57 16 22 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.07 0.85 7.97 -2.39 -0.02 0.83 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 1.91 6.20 -2.39 -0.01 1.90 16 26 H 0.11 1.65 7.70 -2.38 -0.02 1.64 16 27 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.03 0.78 6.63 -2.39 -0.02 0.76 16 29 H 0.07 3.47 5.14 -2.39 -0.01 3.46 16 30 H 0.08 2.81 8.13 -2.38 -0.02 2.79 16 31 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 32 H -0.02 -1.23 8.13 -2.39 -0.02 -1.25 16 33 H -0.01 -0.31 6.26 -2.39 -0.01 -0.33 16 34 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -70.93 278.43 2.61 -68.32 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.05 Total: 7.15 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 3.41 Total: -16.92 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -3.84 Total: -81.71 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.02 Total: -23.76 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.93 2.61 -68.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260789176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.516 kcal (2) G-P(sol) polarization free energy of solvation -70.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds