Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.45127 * 2 1 4 4 C 1.54617 * 109.45754 * 240.03505 * 2 1 3 5 5 C 1.50904 * 109.74711 * 201.66556 * 4 2 1 6 6 N 1.46030 * 104.41443 * 100.43410 * 5 4 2 7 7 C 1.46897 * 110.99866 * 137.77814 * 6 5 4 8 8 C 1.40936 * 116.51328 * 266.12869 * 6 5 4 9 9 C 1.54310 * 106.36852 * 59.03174 * 8 6 5 10 10 O 1.20756 * 120.57692 * 113.85400 * 9 8 6 11 11 C 1.48286 * 118.83747 * 293.82951 * 9 8 6 12 12 H 1.09002 * 108.22905 * 327.28474 * 11 9 8 13 13 C 1.53000 * 108.06989 * 210.42593 * 11 9 8 14 14 C 1.50690 * 109.47619 * 61.93226 * 13 11 9 15 15 H 1.08002 * 119.99912 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00693 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00265 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99532 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47080 * 89.99826 * 18 16 14 20 20 H 1.48498 * 109.47077 * 209.99648 * 18 16 14 21 21 H 1.48501 * 109.47382 * 330.00176 * 18 16 14 22 22 H 1.09001 * 109.47061 * 300.03553 * 1 2 3 23 23 H 1.09003 * 109.46980 * 60.03858 * 1 2 3 24 24 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.42481 * 321.75048 * 4 2 1 26 26 H 1.08998 * 109.42290 * 81.58671 * 4 2 1 27 27 H 1.09002 * 110.44300 * 219.15173 * 5 4 2 28 28 H 1.09001 * 110.44079 * 341.71427 * 5 4 2 29 29 H 1.09000 * 109.47450 * 60.00361 * 7 6 5 30 30 H 1.09002 * 109.46758 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.46938 * 299.99422 * 7 6 5 32 32 H 1.09000 * 110.06550 * 178.23760 * 8 6 5 33 33 H 1.09001 * 110.07585 * 299.81469 * 8 6 5 34 34 H 1.09000 * 109.47096 * 181.93396 * 13 11 9 35 35 H 1.09000 * 109.47314 * 301.92824 * 13 11 9 36 36 H 0.96998 * 120.00033 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0450 -0.7282 -1.2630 5 6 3.4595 -1.2029 -1.0367 6 7 3.3205 -2.6219 -0.7208 7 6 4.3520 -3.4161 -1.4012 8 6 3.2441 -2.9576 0.6459 9 6 2.0174 -2.2102 1.2095 10 8 1.0518 -2.8212 1.6000 11 6 2.0453 -0.7286 1.2636 12 1 3.0731 -0.4133 1.4436 13 6 1.1950 -0.2811 2.4543 14 6 1.7925 -0.8190 3.7288 15 1 2.6894 -1.4196 3.6933 16 6 1.1950 -0.5435 4.9404 17 7 1.7168 -1.0126 6.0527 18 14 -0.3559 0.4959 5.0020 19 1 -1.5467 -0.3850 4.8965 20 1 -0.4026 1.2397 6.2864 21 1 -0.3513 1.4594 3.8719 22 1 -0.3633 0.5144 0.8897 23 1 -0.3633 0.5132 -0.8904 24 1 -0.3633 -1.0276 0.0005 25 1 1.4046 -1.5845 -1.4742 26 1 2.0240 -0.0429 -2.1104 27 1 4.0546 -1.0708 -1.9402 28 1 3.9109 -0.6693 -0.2003 29 1 5.3386 -3.0817 -1.0804 30 1 4.2256 -4.4688 -1.1483 31 1 4.2573 -3.2873 -2.4794 32 1 3.1113 -4.0335 0.7598 33 1 4.1484 -2.6345 1.1616 34 1 1.1717 0.8079 2.4952 35 1 0.1802 -0.6621 2.3396 36 1 1.2962 -0.8191 6.9051 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260797383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = -31.869458 kcal Electronic energy + Delta-G solvation = -16625.522019 eV Core-core repulsion = 14109.882328 eV Total energy + Delta-G solvation = -2515.639692 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05555 -37.16839 -35.59898 -32.82042 -30.88951 -28.91751 -28.57788 -25.75531 -24.23842 -22.19872 -21.24267 -20.34045 -17.66469 -16.85385 -15.85582 -15.66242 -15.32287 -14.88329 -14.16361 -13.68637 -13.42048 -13.29217 -12.92878 -12.57091 -12.38305 -12.12589 -12.05781 -11.55264 -11.48808 -11.23154 -11.10593 -10.75881 -10.55220 -10.24398 -10.06113 -9.80664 -9.44419 -9.18376 -8.66016 -8.48979 -8.04215 -6.00791 -3.97966 2.77981 3.35458 3.41605 3.43938 4.17666 4.49305 4.60717 4.94502 5.17639 5.23105 5.32350 5.35347 5.43459 5.48193 5.58612 5.72039 5.75244 5.83836 5.88293 6.01760 6.06186 6.16919 6.29232 6.34194 6.43844 6.62710 6.73834 6.83940 7.14052 7.19387 7.39745 7.42430 7.81456 8.40267 8.51666 9.00005 9.61873 11.12964 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035170 B = 0.009222 C = 0.007997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.944073 B = 3035.653532 C = 3500.392813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 H 0.074 0.926 4 C -0.120 4.120 5 C 0.058 3.942 6 N -0.560 5.560 7 C 0.030 3.970 8 C 0.027 3.973 9 C 0.391 3.609 10 O -0.436 6.436 11 C -0.128 4.128 12 H 0.079 0.921 13 C -0.006 4.006 14 C -0.518 4.518 15 H 0.066 0.934 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.265 1.265 22 H 0.064 0.936 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.028 0.972 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 0.546 -15.773 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 H 0.092 0.908 4 C -0.159 4.159 5 C -0.068 4.068 6 N -0.286 5.286 7 C -0.117 4.117 8 C -0.103 4.103 9 C 0.263 3.737 10 O -0.305 6.305 11 C -0.147 4.147 12 H 0.097 0.903 13 C -0.043 4.043 14 C -0.556 4.556 15 H 0.084 0.916 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.643 0.100 -15.496 15.720 hybrid contribution 0.177 0.707 0.664 0.986 sum 2.821 0.807 -14.832 15.119 Atomic orbital electron populations 1.21930 0.95197 1.02231 1.01254 1.21672 0.96063 0.98567 0.92665 0.90752 1.21941 0.96352 1.00378 0.97184 1.21845 0.97622 0.86616 1.00729 1.58652 1.49644 1.08078 1.12227 1.22377 0.92256 0.98058 0.99023 1.22262 0.98444 1.01476 0.88084 1.24267 0.86244 0.91124 0.72064 1.90325 1.34570 1.70932 1.34636 1.21549 1.02337 0.93567 0.97229 0.90317 1.19710 0.95952 0.96276 0.92369 1.21070 1.12084 1.32771 0.89627 0.91596 1.24959 0.97098 0.95561 0.95594 1.69909 1.40573 1.45916 0.97912 0.86787 0.84229 0.80997 0.77349 1.20180 1.21472 1.18979 0.91749 0.93494 0.92473 0.90246 0.92184 0.90922 0.92112 0.95618 0.91627 0.91506 0.88941 0.93140 0.96131 0.95334 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.18 37.16 0.30 -2.11 16 2 C -0.07 -1.12 2.79 -88.88 -0.25 -1.37 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.12 -1.58 5.04 -26.93 -0.14 -1.72 16 5 C 0.06 0.73 5.58 -5.35 -0.03 0.70 16 6 N -0.56 -7.70 3.64 -248.89 -0.91 -8.61 16 7 C 0.03 0.32 9.36 60.06 0.56 0.88 16 8 C 0.03 0.44 5.59 -6.24 -0.03 0.41 16 9 C 0.39 8.05 4.89 -28.34 -0.14 7.91 16 10 O -0.44 -10.64 16.55 6.00 0.10 -10.54 16 11 C -0.13 -2.52 1.30 -92.02 -0.12 -2.64 16 12 H 0.08 1.51 6.81 -51.93 -0.35 1.16 16 13 C -0.01 -0.14 1.91 -27.89 -0.05 -0.20 16 14 C -0.52 -15.03 8.86 -34.44 -0.31 -15.33 16 15 H 0.07 2.05 7.71 -52.49 -0.40 1.64 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -28.56 13.96 55.43 0.77 -27.78 16 18 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 22 H 0.06 1.14 6.41 -51.93 -0.33 0.81 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 25 H 0.08 1.16 7.52 -51.93 -0.39 0.77 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 28 H 0.06 0.80 5.91 -51.93 -0.31 0.50 16 29 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 31 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.09 1.47 7.92 -51.93 -0.41 1.06 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.02 0.49 7.11 -51.93 -0.37 0.12 16 35 H 0.03 0.73 5.80 -51.93 -0.30 0.42 16 36 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 277.34 15.07 4.18 4.18 Total: -1.00 -32.83 277.34 -6.62 -39.45 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.80 Total: -3.01 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.30 Total: -11.49 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.13 Total: -36.39 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.10 Total: -10.54 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.83 -6.62 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.577 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds