Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.45127 * 2 1 4 4 C 1.54617 * 109.45754 * 240.03505 * 2 1 3 5 5 C 1.50904 * 109.74711 * 201.66556 * 4 2 1 6 6 N 1.46030 * 104.41443 * 100.43410 * 5 4 2 7 7 C 1.46897 * 110.99866 * 137.77814 * 6 5 4 8 8 C 1.40936 * 116.51328 * 266.12869 * 6 5 4 9 9 C 1.54310 * 106.36852 * 59.03174 * 8 6 5 10 10 O 1.20756 * 120.57692 * 113.85400 * 9 8 6 11 11 C 1.48286 * 118.83747 * 293.82951 * 9 8 6 12 12 H 1.09002 * 108.22905 * 327.28474 * 11 9 8 13 13 C 1.53000 * 108.06989 * 210.42593 * 11 9 8 14 14 C 1.50690 * 109.47619 * 61.93226 * 13 11 9 15 15 H 1.08002 * 119.99912 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00693 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00265 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99532 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47080 * 89.99826 * 18 16 14 20 20 H 1.48498 * 109.47077 * 209.99648 * 18 16 14 21 21 H 1.48501 * 109.47382 * 330.00176 * 18 16 14 22 22 H 1.09001 * 109.47061 * 300.03553 * 1 2 3 23 23 H 1.09003 * 109.46980 * 60.03858 * 1 2 3 24 24 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.42481 * 321.75048 * 4 2 1 26 26 H 1.08998 * 109.42290 * 81.58671 * 4 2 1 27 27 H 1.09002 * 110.44300 * 219.15173 * 5 4 2 28 28 H 1.09001 * 110.44079 * 341.71427 * 5 4 2 29 29 H 1.09000 * 109.47450 * 60.00361 * 7 6 5 30 30 H 1.09002 * 109.46758 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.46938 * 299.99422 * 7 6 5 32 32 H 1.09000 * 110.06550 * 178.23760 * 8 6 5 33 33 H 1.09001 * 110.07585 * 299.81469 * 8 6 5 34 34 H 1.09000 * 109.47096 * 181.93396 * 13 11 9 35 35 H 1.09000 * 109.47314 * 301.92824 * 13 11 9 36 36 H 0.96998 * 120.00033 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0450 -0.7282 -1.2630 5 6 3.4595 -1.2029 -1.0367 6 7 3.3205 -2.6219 -0.7208 7 6 4.3520 -3.4161 -1.4012 8 6 3.2441 -2.9576 0.6459 9 6 2.0174 -2.2102 1.2095 10 8 1.0518 -2.8212 1.6000 11 6 2.0453 -0.7286 1.2636 12 1 3.0731 -0.4133 1.4436 13 6 1.1950 -0.2811 2.4543 14 6 1.7925 -0.8190 3.7288 15 1 2.6894 -1.4196 3.6933 16 6 1.1950 -0.5435 4.9404 17 7 1.7168 -1.0126 6.0527 18 14 -0.3559 0.4959 5.0020 19 1 -1.5467 -0.3850 4.8965 20 1 -0.4026 1.2397 6.2864 21 1 -0.3513 1.4594 3.8719 22 1 -0.3633 0.5144 0.8897 23 1 -0.3633 0.5132 -0.8904 24 1 -0.3633 -1.0276 0.0005 25 1 1.4046 -1.5845 -1.4742 26 1 2.0240 -0.0429 -2.1104 27 1 4.0546 -1.0708 -1.9402 28 1 3.9109 -0.6693 -0.2003 29 1 5.3386 -3.0817 -1.0804 30 1 4.2256 -4.4688 -1.1483 31 1 4.2573 -3.2873 -2.4794 32 1 3.1113 -4.0335 0.7598 33 1 4.1484 -2.6345 1.1616 34 1 1.1717 0.8079 2.4952 35 1 0.1802 -0.6621 2.3396 36 1 1.2962 -0.8191 6.9051 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260797383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = -54.276600 kcal Electronic energy + Delta-G solvation = -16626.493666 eV Core-core repulsion = 14109.882328 eV Total energy + Delta-G solvation = -2516.611338 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48498 -38.55023 -37.02485 -34.89740 -32.56447 -30.19172 -29.97094 -27.39225 -25.47025 -23.48993 -23.07703 -21.54232 -19.29645 -18.92980 -17.15286 -17.05357 -16.67569 -16.40681 -15.87356 -15.13272 -14.95071 -14.57088 -14.50941 -14.26426 -13.96394 -13.51860 -13.16118 -13.04727 -12.99715 -12.67429 -12.36502 -12.35587 -12.01489 -11.90660 -11.66725 -11.42492 -11.21025 -10.98494 -10.78313 -10.23219 -9.14937 -8.32043 -6.34001 1.20645 1.30320 1.32995 1.43320 2.32888 3.00453 3.07240 3.22745 3.82241 3.93942 4.02172 4.10588 4.26081 4.36597 4.53988 4.63686 4.66419 4.70069 4.81415 4.84480 4.88520 4.96192 5.07784 5.08052 5.17030 5.26095 5.28997 5.40437 5.44250 5.61136 5.66274 6.15395 6.19353 6.32793 6.69696 6.80032 7.29355 8.85033 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035170 B = 0.009222 C = 0.007997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.944073 B = 3035.653532 C = 3500.392813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.068 4.068 3 H 0.096 0.904 4 C -0.112 4.112 5 C 0.056 3.944 6 N -0.571 5.571 7 C 0.030 3.970 8 C 0.040 3.960 9 C 0.383 3.617 10 O -0.488 6.488 11 C -0.128 4.128 12 H 0.083 0.917 13 C 0.000 4.000 14 C -0.523 4.523 15 H 0.028 0.972 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.944 3.056 19 H -0.278 1.278 20 H -0.279 1.279 21 H -0.240 1.240 22 H 0.044 0.956 23 H 0.081 0.919 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.030 0.970 35 H 0.016 0.984 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 2.098 -18.525 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 H 0.115 0.885 4 C -0.150 4.150 5 C -0.070 4.070 6 N -0.297 5.297 7 C -0.116 4.116 8 C -0.090 4.090 9 C 0.258 3.742 10 O -0.361 6.361 11 C -0.147 4.147 12 H 0.101 0.899 13 C -0.037 4.037 14 C -0.561 4.561 15 H 0.046 0.954 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.768 3.232 19 H -0.203 1.203 20 H -0.205 1.205 21 H -0.163 1.163 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.862 1.666 -18.285 18.582 hybrid contribution 0.198 0.165 1.506 1.528 sum 3.060 1.831 -16.778 17.153 Atomic orbital electron populations 1.21911 0.95610 1.00974 1.02003 1.21752 0.95697 0.99424 0.91765 0.88541 1.21893 0.96248 1.00223 0.96663 1.21976 0.97605 0.85472 1.01949 1.58661 1.51313 1.09495 1.10260 1.22464 0.91671 0.97605 0.99901 1.22055 0.96186 1.00848 0.89862 1.25015 0.86768 0.91946 0.70456 1.90300 1.36785 1.71877 1.37122 1.21612 1.01738 0.93581 0.97736 0.89914 1.19602 0.95711 0.96329 0.92074 1.21437 1.10871 1.31807 0.91955 0.95369 1.25947 1.00858 0.97236 0.95213 1.70059 1.42597 1.47918 0.98683 0.85745 0.79284 0.79644 0.78548 1.20346 1.20474 1.16266 0.93677 0.90014 0.94745 0.91851 0.88683 0.87429 0.92921 0.94632 0.91618 0.89253 0.89023 0.92865 0.95187 0.96620 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 8.18 71.98 0.59 -3.92 16 2 C -0.07 -1.96 2.79 -9.66 -0.03 -1.99 16 3 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 4 C -0.11 -2.55 5.04 30.46 0.15 -2.40 16 5 C 0.06 1.20 5.58 85.79 0.48 1.67 16 6 N -0.57 -14.40 3.64 -941.36 -3.43 -17.83 16 7 C 0.03 0.55 9.36 127.69 1.20 1.74 16 8 C 0.04 1.31 5.59 87.83 0.49 1.80 16 9 C 0.38 16.01 4.89 29.55 0.14 16.15 16 10 O -0.49 -24.81 16.55 -1.44 -0.02 -24.83 16 11 C -0.13 -4.97 1.30 -11.70 -0.02 -4.99 16 12 H 0.08 3.13 6.81 -2.39 -0.02 3.12 16 13 C 0.00 0.01 1.91 29.84 0.06 0.06 16 14 C -0.52 -31.28 8.86 25.60 0.23 -31.05 16 15 H 0.03 1.84 7.71 -2.91 -0.02 1.81 16 16 C 0.00 0.24 5.47 84.66 0.46 0.70 16 17 N -0.95 -62.03 13.96 21.45 0.30 -61.73 16 18 Si 0.94 46.69 27.47 68.60 1.88 48.58 16 19 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 21 H -0.24 -10.74 6.54 99.48 0.65 -10.09 16 22 H 0.04 1.52 6.41 -2.39 -0.02 1.51 16 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.03 1.18 8.13 -2.39 -0.02 1.16 16 25 H 0.06 1.69 7.52 -2.39 -0.02 1.67 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.11 1.59 7.66 -2.39 -0.02 1.57 16 28 H 0.05 1.23 5.91 -2.39 -0.01 1.22 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 1.19 7.90 -2.39 -0.02 1.17 16 31 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 32 H 0.09 2.93 7.92 -2.39 -0.02 2.92 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.03 1.39 7.11 -2.39 -0.02 1.38 16 35 H 0.02 0.80 5.80 -2.39 -0.01 0.79 16 36 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -74.29 277.34 3.47 -70.82 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.99 Total: 7.21 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 3.76 Total: -22.22 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -3.13 Total: -79.56 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.02 Total: -24.83 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.88 Total: 48.58 kcal Total: -74.29 3.47 -70.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.541 kcal (2) G-P(sol) polarization free energy of solvation -74.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds