Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47245 * 2 1 4 4 C 1.47571 * 109.46933 * 120.00648 * 2 1 3 5 5 C 1.52106 * 114.66450 * 182.88351 * 4 2 1 6 6 N 1.44796 * 109.41301 * 271.46371 * 5 4 2 7 7 C 1.46898 * 111.00553 * 218.45892 * 6 5 4 8 8 C 1.48350 * 110.90990 * 94.57747 * 6 5 4 9 9 C 1.51598 * 111.81059 * 320.08585 * 8 6 5 10 10 O 1.20763 * 118.62577 * 137.70723 * 9 8 6 11 11 C 1.49179 * 122.75103 * 317.41978 * 9 8 6 12 12 H 1.09004 * 109.46844 * 327.74497 * 11 9 8 13 13 C 1.53002 * 109.46920 * 207.75065 * 11 9 8 14 14 C 1.50701 * 109.47195 * 65.00156 * 13 11 9 15 15 H 1.08008 * 119.99921 * 359.97438 * 14 13 11 16 16 C 1.37867 * 120.00145 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00219 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00200 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46694 * 90.00278 * 18 16 14 20 20 H 1.48503 * 109.47312 * 210.00075 * 18 16 14 21 21 H 1.48503 * 109.47102 * 330.00637 * 18 16 14 22 22 H 1.08998 * 109.47396 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47023 * 300.01036 * 1 2 3 24 24 H 1.08997 * 109.47096 * 60.00373 * 1 2 3 25 25 H 1.09000 * 108.44282 * 304.22723 * 4 2 1 26 26 H 1.08997 * 108.44719 * 61.71069 * 4 2 1 27 27 H 1.09001 * 109.48192 * 31.44845 * 5 4 2 28 28 H 1.09008 * 109.48095 * 151.47118 * 5 4 2 29 29 H 1.08994 * 109.47273 * 59.99691 * 7 6 5 30 30 H 1.08997 * 109.47114 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.46723 * 299.99651 * 7 6 5 32 32 H 1.08996 * 109.19141 * 199.41647 * 8 6 5 33 33 H 1.09007 * 108.97260 * 80.59815 * 8 6 5 34 34 H 1.08994 * 109.46760 * 185.00068 * 13 11 9 35 35 H 1.08993 * 109.47171 * 304.99998 * 13 11 9 36 36 H 0.96999 * 120.00469 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0219 -0.6958 1.2048 5 6 3.5351 -0.7048 1.3594 6 7 4.0818 -1.8589 0.6769 7 6 5.1946 -2.4424 1.4378 8 6 4.5063 -1.5075 -0.7005 9 6 3.5258 -0.5638 -1.3686 10 8 3.9601 0.3592 -2.0149 11 6 2.0470 -0.7313 -1.2662 12 1 1.8054 -1.7920 -1.1973 13 6 1.3793 -0.1358 -2.5074 14 6 1.7866 -0.9254 -3.7247 15 1 2.4553 -1.7675 -3.6232 16 6 1.3057 -0.5728 -4.9677 17 7 0.4919 0.4529 -5.0913 18 14 1.8112 -1.5510 -6.4767 19 1 0.8477 -2.6602 -6.6931 20 1 1.8160 -0.6606 -7.6652 21 1 3.1716 -2.1101 -6.2714 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.5885 -0.2150 2.0818 26 1 1.6749 -1.7285 1.1726 27 1 3.9503 0.2048 0.9252 28 1 3.7922 -0.7525 2.4177 29 1 4.8395 -2.7532 2.4203 30 1 5.5862 -3.3076 0.9030 31 1 5.9836 -1.6995 1.5549 32 1 4.5830 -2.4179 -1.2949 33 1 5.4852 -1.0299 -0.6586 34 1 0.2962 -0.1779 -2.3927 35 1 1.6920 0.9016 -2.6258 36 1 0.1538 0.7012 -5.9659 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260797386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = -42.315341 kcal Electronic energy + Delta-G solvation = -16454.858057 eV Core-core repulsion = 13938.765398 eV Total energy + Delta-G solvation = -2516.092659 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90622 -37.06016 -35.66851 -32.89672 -30.61193 -28.76506 -28.32619 -25.58598 -24.37681 -22.15593 -21.61297 -19.80810 -18.05580 -16.31159 -16.23749 -15.70950 -14.98140 -14.43187 -14.14707 -13.93656 -13.50629 -13.21534 -12.81200 -12.58709 -12.19455 -12.08207 -11.72795 -11.54175 -11.23753 -11.11003 -10.92139 -10.85394 -10.58104 -10.34626 -10.15985 -9.88938 -9.27033 -8.97809 -8.60119 -8.30587 -8.25729 -5.92727 -3.93429 2.71573 3.36091 3.42146 3.45829 4.00537 4.51786 4.63182 4.96072 5.13937 5.26669 5.28194 5.40451 5.44498 5.50187 5.69985 5.71795 5.79873 5.87408 6.00093 6.04656 6.28002 6.31234 6.40158 6.44624 6.47769 6.78051 6.86187 6.92896 7.05061 7.19677 7.69605 7.89237 8.04245 8.37371 8.46135 9.10276 9.68953 11.18895 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031079 B = 0.008792 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.708281 B = 3184.090138 C = 3755.588770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 H 0.062 0.938 4 C -0.114 4.114 5 C 0.050 3.950 6 N -0.529 5.529 7 C 0.026 3.974 8 C 0.004 3.996 9 C 0.373 3.627 10 O -0.445 6.445 11 C -0.116 4.116 12 H 0.085 0.915 13 C 0.030 3.970 14 C -0.514 4.514 15 H 0.049 0.951 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.026 0.974 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -4.123 13.959 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.152 4.152 5 C -0.078 4.078 6 N -0.255 5.255 7 C -0.122 4.122 8 C -0.124 4.124 9 C 0.246 3.754 10 O -0.315 6.315 11 C -0.135 4.135 12 H 0.103 0.897 13 C -0.006 4.006 14 C -0.552 4.552 15 H 0.067 0.933 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.626 -3.857 13.433 14.721 hybrid contribution 1.014 -0.100 -0.893 1.355 sum 5.640 -3.958 12.540 14.308 Atomic orbital electron populations 1.21855 0.94367 1.01982 1.01752 1.20376 0.96552 0.98980 0.93450 0.91944 1.20603 0.94206 1.02402 0.97949 1.21733 0.96350 0.91692 0.98040 1.61871 1.31865 1.30186 1.01551 1.22450 0.92152 0.99147 0.98476 1.23310 0.97474 1.01100 0.90491 1.24282 0.92581 0.82317 0.76196 1.90373 1.80727 1.28786 1.31647 1.21908 0.92118 1.01818 0.97696 0.89673 1.19180 0.95705 0.96778 0.88974 1.21147 1.28054 1.13743 0.92256 0.93301 1.24935 0.95233 0.95143 0.98838 1.69946 1.32945 1.26804 1.23713 0.86658 0.78918 0.79923 0.82897 1.20692 1.21235 1.20027 0.92667 0.93636 0.90979 0.92421 0.90594 0.94106 0.91277 0.91126 0.91298 0.95754 0.88108 0.92765 0.95117 0.95578 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.58 37.16 0.32 -1.96 16 2 C -0.07 -1.27 2.16 -92.13 -0.20 -1.47 16 3 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 4 C -0.11 -1.56 4.46 -29.81 -0.13 -1.69 16 5 C 0.05 0.66 5.26 -5.41 -0.03 0.64 16 6 N -0.53 -7.25 4.66 -244.88 -1.14 -8.39 16 7 C 0.03 0.27 9.25 60.06 0.56 0.83 16 8 C 0.00 0.07 5.73 -3.73 -0.02 0.05 16 9 C 0.37 7.69 4.31 -29.32 -0.13 7.57 16 10 O -0.44 -10.94 16.35 6.00 0.10 -10.84 16 11 C -0.12 -2.41 1.73 -91.39 -0.16 -2.57 16 12 H 0.09 1.74 8.11 -51.93 -0.42 1.32 16 13 C 0.03 0.79 3.74 -27.88 -0.10 0.69 16 14 C -0.51 -14.83 8.44 -34.44 -0.29 -15.12 16 15 H 0.05 1.38 7.60 -52.48 -0.40 0.98 16 16 C 0.06 1.75 5.46 -17.83 -0.10 1.65 16 17 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 18 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.32 6.26 -51.93 -0.33 1.00 16 25 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 26 H 0.08 1.06 7.98 -51.93 -0.41 0.65 16 27 H 0.04 0.60 6.93 -51.93 -0.36 0.24 16 28 H 0.07 0.74 7.59 -51.92 -0.39 0.35 16 29 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.05 0.84 7.96 -51.93 -0.41 0.43 16 34 H 0.03 0.82 6.07 -51.93 -0.32 0.50 16 35 H 0.03 0.76 7.60 -51.93 -0.39 0.36 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 283.69 15.07 4.28 4.28 Total: -1.00 -32.16 283.69 -7.28 -39.44 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -5.95 Total: -3.71 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.28 Total: -11.38 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.40 Total: -35.14 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.10 Total: -10.84 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.16 -7.28 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.874 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds