Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47245 * 2 1 4 4 C 1.47571 * 109.46933 * 120.00648 * 2 1 3 5 5 C 1.52106 * 114.66450 * 182.88351 * 4 2 1 6 6 N 1.44796 * 109.41301 * 271.46371 * 5 4 2 7 7 C 1.46898 * 111.00553 * 218.45892 * 6 5 4 8 8 C 1.48350 * 110.90990 * 94.57747 * 6 5 4 9 9 C 1.51598 * 111.81059 * 320.08585 * 8 6 5 10 10 O 1.20763 * 118.62577 * 137.70723 * 9 8 6 11 11 C 1.49179 * 122.75103 * 317.41978 * 9 8 6 12 12 H 1.09004 * 109.46844 * 327.74497 * 11 9 8 13 13 C 1.53002 * 109.46920 * 207.75065 * 11 9 8 14 14 C 1.50701 * 109.47195 * 65.00156 * 13 11 9 15 15 H 1.08008 * 119.99921 * 359.97438 * 14 13 11 16 16 C 1.37867 * 120.00145 * 179.97438 * 14 13 11 17 17 N 1.31509 * 120.00219 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00200 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46694 * 90.00278 * 18 16 14 20 20 H 1.48503 * 109.47312 * 210.00075 * 18 16 14 21 21 H 1.48503 * 109.47102 * 330.00637 * 18 16 14 22 22 H 1.08998 * 109.47396 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47023 * 300.01036 * 1 2 3 24 24 H 1.08997 * 109.47096 * 60.00373 * 1 2 3 25 25 H 1.09000 * 108.44282 * 304.22723 * 4 2 1 26 26 H 1.08997 * 108.44719 * 61.71069 * 4 2 1 27 27 H 1.09001 * 109.48192 * 31.44845 * 5 4 2 28 28 H 1.09008 * 109.48095 * 151.47118 * 5 4 2 29 29 H 1.08994 * 109.47273 * 59.99691 * 7 6 5 30 30 H 1.08997 * 109.47114 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.46723 * 299.99651 * 7 6 5 32 32 H 1.08996 * 109.19141 * 199.41647 * 8 6 5 33 33 H 1.09007 * 108.97260 * 80.59815 * 8 6 5 34 34 H 1.08994 * 109.46760 * 185.00068 * 13 11 9 35 35 H 1.08993 * 109.47171 * 304.99998 * 13 11 9 36 36 H 0.96999 * 120.00469 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0219 -0.6958 1.2048 5 6 3.5351 -0.7048 1.3594 6 7 4.0818 -1.8589 0.6769 7 6 5.1946 -2.4424 1.4378 8 6 4.5063 -1.5075 -0.7005 9 6 3.5258 -0.5638 -1.3686 10 8 3.9601 0.3592 -2.0149 11 6 2.0470 -0.7313 -1.2662 12 1 1.8054 -1.7920 -1.1973 13 6 1.3793 -0.1358 -2.5074 14 6 1.7866 -0.9254 -3.7247 15 1 2.4553 -1.7675 -3.6232 16 6 1.3057 -0.5728 -4.9677 17 7 0.4919 0.4529 -5.0913 18 14 1.8112 -1.5510 -6.4767 19 1 0.8477 -2.6602 -6.6931 20 1 1.8160 -0.6606 -7.6652 21 1 3.1716 -2.1101 -6.2714 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.5885 -0.2150 2.0818 26 1 1.6749 -1.7285 1.1726 27 1 3.9503 0.2048 0.9252 28 1 3.7922 -0.7525 2.4177 29 1 4.8395 -2.7532 2.4203 30 1 5.5862 -3.3076 0.9030 31 1 5.9836 -1.6995 1.5549 32 1 4.5830 -2.4179 -1.2949 33 1 5.4852 -1.0299 -0.6586 34 1 0.2962 -0.1779 -2.3927 35 1 1.6920 0.9016 -2.6258 36 1 0.1538 0.7012 -5.9659 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260797386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = -64.117377 kcal Electronic energy + Delta-G solvation = -16455.803464 eV Core-core repulsion = 13938.765398 eV Total energy + Delta-G solvation = -2517.038066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42237 -38.45500 -37.07509 -34.98731 -32.31321 -29.94308 -29.88503 -27.29567 -25.72374 -23.52561 -23.34014 -21.08805 -19.69808 -18.48708 -17.67246 -16.98053 -16.48410 -16.23147 -15.58127 -15.32401 -14.98776 -14.66185 -14.22106 -13.96918 -13.87875 -13.47902 -13.02620 -12.97945 -12.89513 -12.79904 -12.49987 -12.39846 -12.07377 -11.95524 -11.71389 -11.53040 -11.20262 -10.84034 -10.56555 -10.26173 -9.35634 -8.19253 -6.28173 1.09494 1.34878 1.37523 1.47296 2.39155 2.92080 3.11312 3.17420 3.86419 3.91450 4.00031 4.18353 4.20247 4.48732 4.52248 4.59745 4.68775 4.74190 4.79569 4.92418 4.96807 5.00160 5.08445 5.09957 5.19962 5.26617 5.41077 5.49532 5.57136 5.75478 5.82716 5.88290 6.17316 6.22271 6.73677 6.86214 7.38792 8.92927 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031079 B = 0.008792 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.708281 B = 3184.090138 C = 3755.588770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 H 0.045 0.955 4 C -0.109 4.109 5 C 0.048 3.952 6 N -0.532 5.532 7 C 0.024 3.976 8 C 0.016 3.984 9 C 0.372 3.628 10 O -0.497 6.497 11 C -0.116 4.116 12 H 0.092 0.908 13 C 0.040 3.960 14 C -0.531 4.531 15 H 0.051 0.949 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.269 1.269 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.036 0.964 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.020 0.980 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.017 0.983 35 H -0.019 1.019 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 -6.123 15.764 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.147 4.147 5 C -0.080 4.080 6 N -0.259 5.259 7 C -0.124 4.124 8 C -0.112 4.112 9 C 0.249 3.751 10 O -0.372 6.372 11 C -0.135 4.135 12 H 0.110 0.890 13 C 0.003 3.997 14 C -0.569 4.569 15 H 0.069 0.931 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.782 3.218 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.193 1.193 22 H 0.082 0.918 23 H 0.097 0.903 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.038 0.962 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.035 0.965 35 H -0.001 1.001 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.407 -5.886 15.269 17.234 hybrid contribution 0.742 0.555 -1.417 1.693 sum 6.149 -5.330 13.852 16.066 Atomic orbital electron populations 1.21812 0.93670 1.02467 1.01617 1.20378 0.97138 0.97987 0.93209 0.93646 1.20546 0.94901 1.02343 0.96928 1.21822 0.95708 0.90641 0.99836 1.61939 1.33322 1.30148 1.00466 1.22581 0.91344 0.99303 0.99124 1.23114 0.96002 0.99936 0.92180 1.24828 0.93214 0.82001 0.75060 1.90358 1.81383 1.31197 1.34222 1.21839 0.92547 1.01999 0.97084 0.88965 1.18963 0.95203 0.94292 0.91280 1.21567 1.27870 1.13955 0.93555 0.93078 1.25894 0.95225 0.96274 1.02382 1.70086 1.34140 1.28464 1.24617 0.85561 0.78975 0.78670 0.78571 1.18978 1.20892 1.19348 0.91830 0.90330 0.94506 0.89391 0.90088 0.96183 0.87774 0.88818 0.90509 0.95164 0.87152 0.92087 0.96519 1.00087 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 8.58 71.98 0.62 -3.74 16 2 C -0.07 -2.29 2.16 -11.77 -0.03 -2.32 16 3 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 4 C -0.11 -2.69 4.46 28.60 0.13 -2.56 16 5 C 0.05 1.13 5.26 86.40 0.45 1.58 16 6 N -0.53 -12.98 4.66 -928.66 -4.33 -17.30 16 7 C 0.02 0.40 9.25 127.69 1.18 1.58 16 8 C 0.02 0.48 5.73 85.56 0.49 0.97 16 9 C 0.37 15.57 4.31 28.92 0.12 15.69 16 10 O -0.50 -25.53 16.35 -1.46 -0.02 -25.55 16 11 C -0.12 -4.88 1.73 -11.29 -0.02 -4.90 16 12 H 0.09 3.74 8.11 -2.39 -0.02 3.72 16 13 C 0.04 2.17 3.74 29.85 0.11 2.28 16 14 C -0.53 -31.56 8.44 25.60 0.22 -31.35 16 15 H 0.05 2.93 7.60 -2.91 -0.02 2.91 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -59.21 13.29 21.44 0.28 -58.92 16 18 Si 0.96 46.42 29.54 68.60 2.03 48.45 16 19 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 22 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.04 1.40 6.26 -2.39 -0.01 1.38 16 25 H 0.09 1.69 8.11 -2.39 -0.02 1.67 16 26 H 0.08 1.97 7.98 -2.39 -0.02 1.95 16 27 H 0.02 0.56 6.93 -2.39 -0.02 0.54 16 28 H 0.10 1.75 7.59 -2.38 -0.02 1.73 16 29 H 0.09 1.20 8.06 -2.39 -0.02 1.18 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.06 1.80 7.96 -2.38 -0.02 1.79 16 34 H 0.02 0.94 6.07 -2.39 -0.01 0.93 16 35 H -0.02 -1.22 7.60 -2.39 -0.02 -1.24 16 36 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -72.82 283.69 2.74 -70.08 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.03 Total: 5.56 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 3.74 Total: -22.31 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -4.04 Total: -76.22 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.02 Total: -25.55 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -72.82 2.74 -70.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.967 kcal (2) G-P(sol) polarization free energy of solvation -72.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds