Wall clock time and date at job start Mon Mar 30 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48327 * 2 1 4 4 C 1.53304 * 109.48578 * 239.96955 * 2 1 3 5 5 C 1.51438 * 108.24038 * 186.22864 * 4 2 1 6 6 O 1.20766 * 121.10768 * 229.00422 * 5 4 2 7 7 C 1.51432 * 117.77818 * 49.03287 * 5 4 2 8 8 H 1.09004 * 109.70740 * 191.28581 * 7 5 4 9 9 C 1.52992 * 109.71226 * 70.65440 * 7 5 4 10 10 C 1.50694 * 109.47208 * 65.00069 * 9 7 5 11 11 H 1.08000 * 120.00086 * 359.97438 * 10 9 7 12 12 C 1.37878 * 120.00391 * 180.02562 * 10 9 7 13 13 N 1.31519 * 119.99665 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00519 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46831 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47109 * 119.99684 * 14 12 10 17 17 H 1.48493 * 109.47391 * 239.99881 * 14 12 10 18 18 C 1.53303 * 108.24317 * 310.96585 * 7 5 4 19 19 H 1.09004 * 109.48152 * 293.81716 * 18 7 5 20 20 C 1.53001 * 109.48293 * 173.78966 * 18 7 5 21 21 N 1.46818 * 109.41015 * 53.78751 * 18 7 5 22 22 C 1.46901 * 111.01112 * 170.26071 * 21 18 7 23 23 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00128 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00109 * 1 2 3 26 26 H 1.08998 * 109.70406 * 305.91481 * 4 2 1 27 27 H 1.09002 * 109.70768 * 66.49999 * 4 2 1 28 28 H 1.09004 * 109.47228 * 184.99679 * 9 7 5 29 29 H 1.08996 * 109.47470 * 304.99833 * 9 7 5 30 30 H 0.96997 * 119.99875 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.47058 * 59.99965 * 20 18 7 32 32 H 1.09004 * 109.46528 * 180.02562 * 20 18 7 33 33 H 1.08992 * 109.46937 * 299.99780 * 20 18 7 34 34 H 1.09006 * 109.47170 * 180.74049 * 22 21 18 35 35 H 1.08996 * 109.47404 * 300.74315 * 22 21 18 36 36 H 1.09004 * 109.46794 * 60.74648 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0414 -0.7233 -1.2512 5 6 3.5474 -0.8433 -1.1471 6 8 4.2636 -0.5262 -2.0663 7 6 4.1251 -1.3749 0.1478 8 1 5.2042 -1.2209 0.1594 9 6 3.8146 -2.8674 0.2772 10 6 4.5260 -3.6249 -0.8140 11 1 5.1381 -3.0948 -1.5287 12 6 4.3947 -4.9947 -0.9008 13 7 3.6489 -5.6402 -0.0308 14 14 5.2760 -5.9337 -2.2539 15 1 6.0454 -4.9828 -3.0960 16 1 6.2052 -6.9206 -1.6473 17 1 4.2786 -6.6443 -3.0938 18 6 3.4814 -0.6102 1.3102 19 1 3.7902 0.4345 1.2734 20 6 3.9278 -1.2279 2.6368 21 7 2.0198 -0.6927 1.1985 22 6 1.3689 -0.1742 2.4091 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.5965 -1.7167 -1.3091 27 1 1.7782 -0.1503 -2.1404 28 1 4.1537 -3.2262 1.2490 29 1 2.7397 -3.0240 0.1870 30 1 3.5562 -6.6038 -0.0921 31 1 5.0130 -1.1673 2.7189 32 1 3.4696 -0.6843 3.4631 33 1 3.6184 -2.2724 2.6736 34 1 0.2872 -0.2593 2.3048 35 1 1.6971 -0.7513 3.2736 36 1 1.6394 0.8727 2.5470 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260820992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:52 Heat of formation + Delta-G solvation = -41.574009 kcal Electronic energy + Delta-G solvation = -16614.727031 eV Core-core repulsion = 14098.666518 eV Total energy + Delta-G solvation = -2516.060512 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85080 -37.39429 -34.31137 -32.77423 -31.57072 -28.27653 -27.92986 -25.87382 -25.00379 -22.32175 -20.72532 -20.20868 -17.84043 -16.46012 -15.84817 -15.55277 -14.81990 -14.47804 -14.39078 -13.72962 -13.48161 -13.13896 -12.68398 -12.30468 -12.09255 -11.98120 -11.81638 -11.64394 -11.22146 -11.09029 -10.96313 -10.82396 -10.69966 -10.42870 -10.37305 -10.09844 -9.40501 -9.02145 -8.57748 -8.25368 -7.93335 -5.97239 -3.98864 2.79120 3.34176 3.41875 3.49293 4.07774 4.50258 4.78523 5.04346 5.15489 5.27901 5.39446 5.39908 5.53166 5.63991 5.66974 5.69036 5.76866 5.90150 5.92411 6.05951 6.10507 6.24695 6.28986 6.36659 6.43879 6.60856 6.69846 6.95251 7.35401 7.43601 7.72333 7.83647 8.04783 8.31291 8.43415 9.09230 9.65518 11.13114 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.009120 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.017368 B = 3069.292896 C = 3311.602104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.092 3.908 3 H 0.036 0.964 4 C -0.161 4.161 5 C 0.384 3.616 6 O -0.476 6.476 7 C -0.122 4.122 8 H 0.082 0.918 9 C 0.044 3.956 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.886 3.114 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.094 3.906 19 H 0.029 0.971 20 C -0.149 4.149 21 N -0.526 5.526 22 C 0.020 3.980 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.259 0.741 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 10.668 4.642 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 H 0.054 0.946 4 C -0.199 4.199 5 C 0.261 3.739 6 O -0.351 6.351 7 C -0.142 4.142 8 H 0.101 0.899 9 C 0.008 3.992 10 C -0.566 4.566 11 H 0.074 0.926 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.714 3.286 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.014 4.014 19 H 0.047 0.953 20 C -0.206 4.206 21 N -0.252 5.252 22 C -0.128 4.128 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.130 0.870 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.748 10.180 4.156 12.408 hybrid contribution 0.656 0.152 -0.654 0.939 sum -5.092 10.332 3.502 12.039 Atomic orbital electron populations 1.21955 0.93991 1.03084 1.01444 1.21484 0.95545 0.94620 0.90006 0.94577 1.22418 0.95988 1.03913 0.97612 1.24767 0.90641 0.70276 0.88204 1.90301 1.64354 1.39529 1.40910 1.22214 0.99544 1.01337 0.91071 0.89950 1.19058 0.98314 0.84356 0.97520 1.21414 1.29475 0.92243 1.13429 0.92615 1.24942 0.95336 0.97750 0.95959 1.69974 1.39160 1.08193 1.35748 0.86620 0.79693 0.79961 0.82336 1.19697 1.21013 1.21037 1.21650 0.86558 0.96627 0.96571 0.95301 1.21995 1.00853 1.03078 0.94644 1.61738 1.05562 1.56164 1.01735 1.22505 0.99828 0.97118 0.93355 0.91142 0.92293 0.92331 0.86977 0.90103 0.94985 0.94522 0.93126 0.92267 0.93191 0.89915 0.91090 0.90761 0.96440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.63 37.16 0.32 -1.41 16 2 C 0.09 1.35 2.51 -67.59 -0.17 1.18 16 3 H 0.04 0.52 8.10 -51.93 -0.42 0.10 16 4 C -0.16 -2.80 5.36 -27.36 -0.15 -2.95 16 5 C 0.38 8.15 5.48 -28.31 -0.16 7.99 16 6 O -0.48 -11.43 17.91 5.99 0.11 -11.32 16 7 C -0.12 -2.56 2.23 -91.26 -0.20 -2.77 16 8 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 9 C 0.04 1.11 3.90 -27.89 -0.11 1.00 16 10 C -0.53 -14.99 8.61 -34.44 -0.30 -15.29 16 11 H 0.06 1.64 7.61 -52.49 -0.40 1.24 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 14 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 15 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 18 C 0.09 1.59 2.22 -67.60 -0.15 1.44 16 19 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 20 C -0.15 -2.30 8.12 37.16 0.30 -2.00 16 21 N -0.53 -8.29 4.14 -226.64 -0.94 -9.22 16 22 C 0.02 0.25 8.42 60.07 0.51 0.75 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.60 6.23 -51.93 -0.32 0.27 16 26 H 0.11 2.08 7.79 -51.93 -0.40 1.68 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.03 0.83 6.15 -51.93 -0.32 0.51 16 29 H 0.04 0.96 7.33 -51.93 -0.38 0.58 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.64 6.30 -51.93 -0.33 0.32 16 33 H 0.08 1.47 6.28 -51.93 -0.33 1.14 16 34 H 0.07 0.79 5.94 -51.93 -0.31 0.48 16 35 H 0.07 0.91 6.15 -51.93 -0.32 0.59 16 36 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 280.28 15.07 4.22 4.22 Total: -1.00 -31.15 280.28 -6.71 -37.86 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.62 Total: -2.71 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.20 Total: -10.38 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.20 Total: -34.85 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.11 Total: -11.32 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.15 -6.71 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.711 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds