Wall clock time and date at job start Mon Mar 30 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48327 * 2 1 4 4 C 1.53304 * 109.48578 * 239.96955 * 2 1 3 5 5 C 1.51438 * 108.24038 * 186.22864 * 4 2 1 6 6 O 1.20766 * 121.10768 * 229.00422 * 5 4 2 7 7 C 1.51432 * 117.77818 * 49.03287 * 5 4 2 8 8 H 1.09004 * 109.70740 * 191.28581 * 7 5 4 9 9 C 1.52992 * 109.71226 * 70.65440 * 7 5 4 10 10 C 1.50694 * 109.47208 * 65.00069 * 9 7 5 11 11 H 1.08000 * 120.00086 * 359.97438 * 10 9 7 12 12 C 1.37878 * 120.00391 * 180.02562 * 10 9 7 13 13 N 1.31519 * 119.99665 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00519 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46831 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47109 * 119.99684 * 14 12 10 17 17 H 1.48493 * 109.47391 * 239.99881 * 14 12 10 18 18 C 1.53303 * 108.24317 * 310.96585 * 7 5 4 19 19 H 1.09004 * 109.48152 * 293.81716 * 18 7 5 20 20 C 1.53001 * 109.48293 * 173.78966 * 18 7 5 21 21 N 1.46818 * 109.41015 * 53.78751 * 18 7 5 22 22 C 1.46901 * 111.01112 * 170.26071 * 21 18 7 23 23 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00128 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00109 * 1 2 3 26 26 H 1.08998 * 109.70406 * 305.91481 * 4 2 1 27 27 H 1.09002 * 109.70768 * 66.49999 * 4 2 1 28 28 H 1.09004 * 109.47228 * 184.99679 * 9 7 5 29 29 H 1.08996 * 109.47470 * 304.99833 * 9 7 5 30 30 H 0.96997 * 119.99875 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.47058 * 59.99965 * 20 18 7 32 32 H 1.09004 * 109.46528 * 180.02562 * 20 18 7 33 33 H 1.08992 * 109.46937 * 299.99780 * 20 18 7 34 34 H 1.09006 * 109.47170 * 180.74049 * 22 21 18 35 35 H 1.08996 * 109.47404 * 300.74315 * 22 21 18 36 36 H 1.09004 * 109.46794 * 60.74648 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0414 -0.7233 -1.2512 5 6 3.5474 -0.8433 -1.1471 6 8 4.2636 -0.5262 -2.0663 7 6 4.1251 -1.3749 0.1478 8 1 5.2042 -1.2209 0.1594 9 6 3.8146 -2.8674 0.2772 10 6 4.5260 -3.6249 -0.8140 11 1 5.1381 -3.0948 -1.5287 12 6 4.3947 -4.9947 -0.9008 13 7 3.6489 -5.6402 -0.0308 14 14 5.2760 -5.9337 -2.2539 15 1 6.0454 -4.9828 -3.0960 16 1 6.2052 -6.9206 -1.6473 17 1 4.2786 -6.6443 -3.0938 18 6 3.4814 -0.6102 1.3102 19 1 3.7902 0.4345 1.2734 20 6 3.9278 -1.2279 2.6368 21 7 2.0198 -0.6927 1.1985 22 6 1.3689 -0.1742 2.4091 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.5965 -1.7167 -1.3091 27 1 1.7782 -0.1503 -2.1404 28 1 4.1537 -3.2262 1.2490 29 1 2.7397 -3.0240 0.1870 30 1 3.5562 -6.6038 -0.0921 31 1 5.0130 -1.1673 2.7189 32 1 3.4696 -0.6843 3.4631 33 1 3.6184 -2.2724 2.6736 34 1 0.2872 -0.2593 2.3048 35 1 1.6971 -0.7513 3.2736 36 1 1.6394 0.8727 2.5470 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260820992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:51 Heat of formation + Delta-G solvation = -61.885838 kcal Electronic energy + Delta-G solvation = -16615.607818 eV Core-core repulsion = 14098.666518 eV Total energy + Delta-G solvation = -2516.941300 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34279 -38.92731 -35.97088 -34.51320 -33.19557 -29.97626 -29.08653 -27.35154 -26.45724 -24.25674 -22.00074 -21.58374 -19.40230 -18.56183 -17.16234 -17.00314 -16.68104 -16.19357 -15.86288 -15.39313 -14.79254 -14.54250 -14.14825 -13.72261 -13.51824 -13.46665 -13.41113 -12.92231 -12.85368 -12.70789 -12.42771 -12.28429 -12.26573 -12.02213 -11.81815 -11.67374 -11.25196 -11.05070 -10.59070 -10.14265 -9.10653 -8.19609 -6.28233 1.08953 1.34218 1.35908 1.48679 2.39371 2.91045 3.13194 3.27460 3.82063 3.86120 3.94260 4.19800 4.24728 4.37780 4.54843 4.57531 4.65486 4.75224 4.81370 4.86979 4.91782 5.01629 5.07185 5.07830 5.13497 5.24233 5.36740 5.44233 5.55191 5.76167 5.90392 6.21557 6.22769 6.28320 6.63431 6.87891 7.39510 8.90523 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.009120 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.017368 B = 3069.292896 C = 3311.602104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.094 3.906 3 H 0.048 0.952 4 C -0.156 4.156 5 C 0.377 3.623 6 O -0.512 6.512 7 C -0.124 4.124 8 H 0.065 0.935 9 C 0.062 3.938 10 C -0.548 4.548 11 H 0.037 0.963 12 C 0.015 3.985 13 N -0.917 5.917 14 Si 0.946 3.054 15 H -0.278 1.278 16 H -0.272 1.272 17 H -0.275 1.275 18 C 0.101 3.899 19 H 0.045 0.955 20 C -0.143 4.143 21 N -0.548 5.548 22 C 0.020 3.980 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.017 0.983 29 H 0.019 0.981 30 H 0.264 0.736 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 11.720 5.155 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 H 0.066 0.934 4 C -0.194 4.194 5 C 0.256 3.744 6 O -0.389 6.389 7 C -0.144 4.144 8 H 0.084 0.916 9 C 0.025 3.975 10 C -0.586 4.586 11 H 0.055 0.945 12 C -0.184 4.184 13 N -0.557 5.557 14 Si 0.772 3.228 15 H -0.203 1.203 16 H -0.198 1.198 17 H -0.200 1.200 18 C -0.008 4.008 19 H 0.063 0.937 20 C -0.200 4.200 21 N -0.274 5.274 22 C -0.127 4.127 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.866 11.232 4.690 13.975 hybrid contribution 1.005 -0.181 -0.803 1.299 sum -5.861 11.051 3.887 13.099 Atomic orbital electron populations 1.21917 0.91404 1.02971 1.03440 1.21557 0.97467 0.94349 0.88105 0.93372 1.22426 0.92665 1.03870 1.00441 1.25308 0.92614 0.69036 0.87424 1.90276 1.65648 1.41306 1.41708 1.22115 0.99210 0.99477 0.93561 0.91629 1.18743 0.96462 0.86695 0.95558 1.21684 1.29772 0.93016 1.14129 0.94453 1.25675 0.96024 0.98603 0.98098 1.70055 1.39970 1.08687 1.37000 0.85684 0.78835 0.78622 0.79673 1.20264 1.19753 1.20002 1.21524 0.87626 0.96615 0.94995 0.93720 1.21936 1.01202 1.01657 0.95183 1.61677 1.04703 1.57566 1.03500 1.22581 1.00498 0.97951 0.91685 0.92280 0.90575 0.90118 0.88480 0.88253 0.96446 0.96273 0.92684 0.92159 0.89896 0.92670 0.89451 0.90648 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.63 71.98 0.62 -2.21 16 2 C 0.09 2.53 2.51 45.03 0.11 2.64 16 3 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 4 C -0.16 -5.31 5.36 30.18 0.16 -5.15 16 5 C 0.38 16.19 5.48 29.57 0.16 16.35 16 6 O -0.51 -25.13 17.91 -1.47 -0.03 -25.15 16 7 C -0.12 -5.31 2.23 -11.21 -0.03 -5.33 16 8 H 0.07 2.96 8.14 -2.38 -0.02 2.94 16 9 C 0.06 3.21 3.90 29.84 0.12 3.33 16 10 C -0.55 -32.08 8.61 25.60 0.22 -31.86 16 11 H 0.04 2.28 7.61 -2.91 -0.02 2.25 16 12 C 0.02 0.88 5.46 84.65 0.46 1.34 16 13 N -0.92 -54.83 13.29 21.45 0.28 -54.55 16 14 Si 0.95 45.98 29.54 68.60 2.03 48.01 16 15 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 18 C 0.10 3.31 2.22 45.03 0.10 3.41 16 19 H 0.05 1.34 8.10 -2.38 -0.02 1.32 16 20 C -0.14 -4.28 8.12 71.98 0.58 -3.69 16 21 N -0.55 -16.23 4.14 -870.96 -3.60 -19.83 16 22 C 0.02 0.42 8.42 127.69 1.08 1.50 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 1.30 6.23 -2.38 -0.01 1.28 16 26 H 0.10 3.64 7.79 -2.39 -0.02 3.62 16 27 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.02 0.94 6.15 -2.38 -0.01 0.92 16 29 H 0.02 1.03 7.33 -2.39 -0.02 1.02 16 30 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.92 6.30 -2.38 -0.02 1.91 16 33 H 0.05 1.97 6.28 -2.39 -0.02 1.95 16 34 H 0.09 1.60 5.94 -2.38 -0.01 1.59 16 35 H 0.07 1.61 6.15 -2.39 -0.01 1.59 16 36 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -68.01 280.28 3.32 -64.69 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.05 Total: 6.53 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 3.59 Total: -19.69 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -3.32 Total: -74.38 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.03 Total: -25.15 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -68.01 3.32 -64.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.801 kcal (2) G-P(sol) polarization free energy of solvation -68.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds