Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48246 * 2 1 4 4 C 1.53292 * 109.48562 * 239.96890 * 2 1 3 5 5 C 1.51436 * 108.24503 * 186.23257 * 4 2 1 6 6 O 1.20768 * 121.11200 * 229.05065 * 5 4 2 7 7 C 1.51432 * 117.78237 * 49.02205 * 5 4 2 8 8 H 1.09000 * 109.70788 * 70.66126 * 7 5 4 9 9 C 1.52996 * 109.71269 * 191.28898 * 7 5 4 10 10 C 1.50703 * 109.47101 * 295.00050 * 9 7 5 11 11 H 1.07995 * 119.99584 * 359.97438 * 10 9 7 12 12 C 1.37875 * 119.99987 * 180.02562 * 10 9 7 13 13 N 1.31514 * 120.00111 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00067 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.47074 * 90.00217 * 14 12 10 16 16 H 1.48498 * 109.47312 * 210.00052 * 14 12 10 17 17 H 1.48507 * 109.47137 * 330.00295 * 14 12 10 18 18 C 1.53299 * 108.24226 * 310.97762 * 7 5 4 19 19 H 1.09003 * 109.48090 * 293.81455 * 18 7 5 20 20 C 1.52997 * 109.48490 * 173.78383 * 18 7 5 21 21 N 1.46828 * 109.48402 * 120.03993 * 2 1 3 22 22 C 1.46900 * 110.99827 * 309.72968 * 21 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.03378 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.03359 * 1 2 3 26 26 H 1.09001 * 109.70624 * 305.91424 * 4 2 1 27 27 H 1.08996 * 109.71524 * 66.53959 * 4 2 1 28 28 H 1.08998 * 109.47108 * 55.00413 * 9 7 5 29 29 H 1.09007 * 109.47146 * 174.99744 * 9 7 5 30 30 H 0.96998 * 119.99943 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.47380 * 59.99583 * 20 18 7 32 32 H 1.09003 * 109.47421 * 180.02562 * 20 18 7 33 33 H 1.09001 * 109.47111 * 299.99929 * 20 18 7 34 34 H 1.09006 * 109.47060 * 56.04830 * 22 21 2 35 35 H 1.09007 * 109.47293 * 176.04141 * 22 21 2 36 36 H 1.08996 * 109.47569 * 296.04491 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0413 -0.7232 -1.2511 5 6 3.5473 -0.8434 -1.1470 6 8 4.2637 -0.5256 -2.0659 7 6 4.1252 -1.3748 0.1479 8 1 3.9039 -2.4381 0.2401 9 6 5.6397 -1.1588 0.1641 10 6 6.2768 -1.9861 -0.9226 11 1 5.6628 -2.6044 -1.5606 12 6 7.6435 -1.9544 -1.1015 13 7 8.1996 -2.6767 -2.0494 14 14 8.7055 -0.8855 0.0027 15 1 9.1290 -1.6688 1.1912 16 1 9.9058 -0.4374 -0.7481 17 1 7.9260 0.2994 0.4428 18 6 3.4814 -0.6101 1.3102 19 1 3.7902 0.4346 1.2733 20 6 3.9278 -1.2277 2.6369 21 7 2.0197 -0.6929 1.1983 22 6 1.3689 -0.1747 2.4090 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5133 -0.8903 25 1 -0.3634 0.5144 0.8897 26 1 1.5965 -1.7167 -1.3090 27 1 1.7789 -0.1500 -2.1403 28 1 5.8582 -0.1047 -0.0063 29 1 6.0395 -1.4608 1.1323 30 1 9.1610 -2.6541 -2.1755 31 1 5.0130 -1.1671 2.7190 32 1 3.4696 -0.6841 3.4631 33 1 3.6185 -2.2722 2.6737 34 1 0.2872 -0.2598 2.3048 35 1 1.6971 -0.7519 3.2734 36 1 1.6394 0.8721 2.5472 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260820993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = -34.854204 kcal Electronic energy + Delta-G solvation = -16474.590098 eV Core-core repulsion = 13958.820978 eV Total energy + Delta-G solvation = -2515.769120 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90378 -37.42693 -34.50517 -32.61526 -31.63893 -29.03293 -28.08713 -25.91645 -25.16850 -21.88059 -20.64861 -20.06453 -18.48614 -16.86598 -15.83650 -15.48368 -15.20335 -14.50991 -14.24966 -13.83186 -13.43147 -13.22710 -12.81345 -12.50944 -12.38724 -12.16145 -11.87738 -11.68834 -11.50151 -11.23900 -11.14755 -10.91890 -10.73396 -10.61153 -10.32287 -9.80499 -9.55742 -9.15729 -8.55856 -8.33107 -8.20789 -5.90997 -3.85489 2.79976 3.35722 3.43603 3.46773 3.90668 4.54559 4.63870 4.89374 5.03391 5.11222 5.26305 5.38201 5.43755 5.49632 5.54651 5.59856 5.60498 5.74563 5.78963 5.86706 6.00168 6.06597 6.13243 6.17174 6.30302 6.37497 6.49439 6.72876 7.15596 7.17494 7.22837 7.39090 7.87506 8.40678 8.64517 9.13569 9.70510 11.23348 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036966 B = 0.008707 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.266916 B = 3215.113924 C = 3730.712661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 H 0.041 0.959 4 C -0.163 4.163 5 C 0.352 3.648 6 O -0.418 6.418 7 C -0.110 4.110 8 H 0.103 0.897 9 C -0.001 4.001 10 C -0.495 4.495 11 H 0.070 0.930 12 C 0.065 3.935 13 N -0.906 5.906 14 Si 0.875 3.125 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.268 1.268 18 C 0.090 3.910 19 H 0.040 0.960 20 C -0.147 4.147 21 N -0.537 5.537 22 C 0.018 3.982 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.016 0.984 29 H 0.021 0.979 30 H 0.260 0.740 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 5.441 9.010 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 H 0.059 0.941 4 C -0.201 4.201 5 C 0.223 3.777 6 O -0.287 6.287 7 C -0.129 4.129 8 H 0.121 0.879 9 C -0.039 4.039 10 C -0.533 4.533 11 H 0.088 0.912 12 C -0.135 4.135 13 N -0.546 5.546 14 Si 0.703 3.297 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.193 1.193 18 C -0.018 4.018 19 H 0.058 0.942 20 C -0.204 4.204 21 N -0.263 5.263 22 C -0.130 4.130 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.102 0.898 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -14.645 5.095 8.378 17.624 hybrid contribution 0.818 1.331 0.587 1.669 sum -13.827 6.426 8.965 17.687 Atomic orbital electron populations 1.21956 0.94032 1.02749 1.01696 1.21507 0.95342 0.95275 0.89841 0.94082 1.22499 0.96573 1.03077 0.97945 1.24734 0.89796 0.74311 0.88840 1.90462 1.63524 1.35238 1.39448 1.21899 0.98378 1.01049 0.91556 0.87921 1.19554 0.89097 0.97556 0.97686 1.20928 0.92258 1.25260 1.14870 0.91184 1.24946 0.97939 0.95350 0.95272 1.69908 1.10833 1.41304 1.32554 0.86855 0.80261 0.81662 0.80916 1.20404 1.21461 1.19253 1.21709 0.85705 0.98130 0.96291 0.94208 1.21971 1.01985 1.01475 0.94970 1.61869 1.05988 1.56370 1.02028 1.22507 0.99678 0.97622 0.93179 0.91487 0.92140 0.92287 0.88249 0.89786 0.96575 0.96081 0.92975 0.91221 0.92942 0.91536 0.91110 0.90825 0.96063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.63 37.16 0.32 -1.11 16 2 C 0.09 1.15 2.51 -67.60 -0.17 0.98 16 3 H 0.04 0.56 8.10 -51.93 -0.42 0.14 16 4 C -0.16 -2.43 5.64 -27.37 -0.15 -2.59 16 5 C 0.35 7.15 6.40 -28.31 -0.18 6.97 16 6 O -0.42 -10.48 15.70 5.99 0.09 -10.39 16 7 C -0.11 -2.18 2.04 -91.26 -0.19 -2.37 16 8 H 0.10 2.06 8.14 -51.93 -0.42 1.63 16 9 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 10 C -0.49 -14.59 8.18 -34.44 -0.28 -14.87 16 11 H 0.07 2.25 7.70 -52.49 -0.40 1.85 16 12 C 0.06 1.97 5.47 -17.82 -0.10 1.87 16 13 N -0.91 -29.11 13.96 55.43 0.77 -28.33 16 14 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 17 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 18 C 0.09 1.43 1.98 -67.60 -0.13 1.29 16 19 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 20 C -0.15 -2.06 8.41 37.16 0.31 -1.75 16 21 N -0.54 -7.25 4.56 -226.65 -1.03 -8.28 16 22 C 0.02 0.19 8.42 60.06 0.51 0.70 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.51 6.23 -51.93 -0.32 0.18 16 26 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 29 H 0.02 0.49 5.91 -51.93 -0.31 0.18 16 30 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 31 H 0.07 1.05 6.57 -51.93 -0.34 0.71 16 32 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.64 5.94 -51.93 -0.31 0.33 16 35 H 0.07 0.74 6.15 -51.93 -0.32 0.42 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -33.44 276.74 -6.49 -39.93 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -5.67 Total: -3.92 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.15 Total: -10.99 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.26 Total: -36.61 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.44 -6.49 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.072 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds