Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48246 * 2 1 4 4 C 1.53292 * 109.48562 * 239.96890 * 2 1 3 5 5 C 1.51436 * 108.24503 * 186.23257 * 4 2 1 6 6 O 1.20768 * 121.11200 * 229.05065 * 5 4 2 7 7 C 1.51432 * 117.78237 * 49.02205 * 5 4 2 8 8 H 1.09000 * 109.70788 * 70.66126 * 7 5 4 9 9 C 1.52996 * 109.71269 * 191.28898 * 7 5 4 10 10 C 1.50703 * 109.47101 * 295.00050 * 9 7 5 11 11 H 1.07995 * 119.99584 * 359.97438 * 10 9 7 12 12 C 1.37875 * 119.99987 * 180.02562 * 10 9 7 13 13 N 1.31514 * 120.00111 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00067 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.47074 * 90.00217 * 14 12 10 16 16 H 1.48498 * 109.47312 * 210.00052 * 14 12 10 17 17 H 1.48507 * 109.47137 * 330.00295 * 14 12 10 18 18 C 1.53299 * 108.24226 * 310.97762 * 7 5 4 19 19 H 1.09003 * 109.48090 * 293.81455 * 18 7 5 20 20 C 1.52997 * 109.48490 * 173.78383 * 18 7 5 21 21 N 1.46828 * 109.48402 * 120.03993 * 2 1 3 22 22 C 1.46900 * 110.99827 * 309.72968 * 21 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.03378 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.03359 * 1 2 3 26 26 H 1.09001 * 109.70624 * 305.91424 * 4 2 1 27 27 H 1.08996 * 109.71524 * 66.53959 * 4 2 1 28 28 H 1.08998 * 109.47108 * 55.00413 * 9 7 5 29 29 H 1.09007 * 109.47146 * 174.99744 * 9 7 5 30 30 H 0.96998 * 119.99943 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.47380 * 59.99583 * 20 18 7 32 32 H 1.09003 * 109.47421 * 180.02562 * 20 18 7 33 33 H 1.09001 * 109.47111 * 299.99929 * 20 18 7 34 34 H 1.09006 * 109.47060 * 56.04830 * 22 21 2 35 35 H 1.09007 * 109.47293 * 176.04141 * 22 21 2 36 36 H 1.08996 * 109.47569 * 296.04491 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0413 -0.7232 -1.2511 5 6 3.5473 -0.8434 -1.1470 6 8 4.2637 -0.5256 -2.0659 7 6 4.1252 -1.3748 0.1479 8 1 3.9039 -2.4381 0.2401 9 6 5.6397 -1.1588 0.1641 10 6 6.2768 -1.9861 -0.9226 11 1 5.6628 -2.6044 -1.5606 12 6 7.6435 -1.9544 -1.1015 13 7 8.1996 -2.6767 -2.0494 14 14 8.7055 -0.8855 0.0027 15 1 9.1290 -1.6688 1.1912 16 1 9.9058 -0.4374 -0.7481 17 1 7.9260 0.2994 0.4428 18 6 3.4814 -0.6101 1.3102 19 1 3.7902 0.4346 1.2733 20 6 3.9278 -1.2277 2.6369 21 7 2.0197 -0.6929 1.1983 22 6 1.3689 -0.1747 2.4090 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5133 -0.8903 25 1 -0.3634 0.5144 0.8897 26 1 1.5965 -1.7167 -1.3090 27 1 1.7789 -0.1500 -2.1403 28 1 5.8582 -0.1047 -0.0063 29 1 6.0395 -1.4608 1.1323 30 1 9.1610 -2.6541 -2.1755 31 1 5.0130 -1.1671 2.7190 32 1 3.4696 -0.6841 3.4631 33 1 3.6185 -2.2722 2.6737 34 1 0.2872 -0.2598 2.3048 35 1 1.6971 -0.7519 3.2734 36 1 1.6394 0.8721 2.5472 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260820993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = -58.941507 kcal Electronic energy + Delta-G solvation = -16475.634602 eV Core-core repulsion = 13958.820978 eV Total energy + Delta-G solvation = -2516.813624 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31303 -38.87760 -36.06349 -34.46507 -33.18138 -30.68638 -29.10614 -27.28745 -26.50514 -23.65966 -21.97357 -21.27722 -20.03673 -18.97041 -17.16267 -16.85594 -16.67939 -16.16026 -15.77069 -15.42272 -14.81937 -14.56162 -14.40528 -13.89120 -13.64758 -13.51779 -13.27990 -13.04134 -12.86446 -12.50998 -12.45155 -12.29481 -12.08146 -11.92212 -11.86320 -11.62881 -11.45574 -11.21398 -10.75994 -10.07758 -9.26375 -8.25123 -6.25006 1.18231 1.30386 1.34916 1.45454 2.36377 2.83878 3.08722 3.25361 3.82254 3.85661 3.90061 4.19531 4.22335 4.35173 4.54104 4.56509 4.64529 4.70818 4.74897 4.84950 4.85936 4.94158 5.03167 5.05650 5.09953 5.21887 5.25421 5.36537 5.39571 5.51161 5.65886 6.10506 6.18712 6.29882 6.74003 6.84045 7.34588 8.93086 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036966 B = 0.008707 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.266916 B = 3215.113924 C = 3730.712661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.035 0.965 4 C -0.153 4.153 5 C 0.345 3.655 6 O -0.481 6.481 7 C -0.114 4.114 8 H 0.099 0.901 9 C 0.004 3.996 10 C -0.499 4.499 11 H 0.022 0.978 12 C -0.004 4.004 13 N -0.958 5.958 14 Si 0.948 3.052 15 H -0.256 1.256 16 H -0.287 1.287 17 H -0.253 1.253 18 C 0.099 3.901 19 H 0.031 0.969 20 C -0.144 4.144 21 N -0.541 5.541 22 C 0.016 3.984 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.003 0.997 29 H 0.038 0.962 30 H 0.263 0.737 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.028 6.709 11.754 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 H 0.053 0.947 4 C -0.190 4.190 5 C 0.221 3.779 6 O -0.355 6.355 7 C -0.133 4.133 8 H 0.116 0.884 9 C -0.033 4.033 10 C -0.537 4.537 11 H 0.041 0.959 12 C -0.199 4.199 13 N -0.600 5.600 14 Si 0.772 3.228 15 H -0.180 1.180 16 H -0.213 1.213 17 H -0.177 1.177 18 C -0.010 4.010 19 H 0.049 0.951 20 C -0.201 4.201 21 N -0.266 5.266 22 C -0.131 4.131 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.112 0.888 28 H 0.021 0.979 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -16.632 6.358 11.160 21.015 hybrid contribution 1.343 0.871 -0.331 1.634 sum -15.290 7.229 10.830 20.083 Atomic orbital electron populations 1.21911 0.90867 1.03552 1.03248 1.21589 0.97665 0.94291 0.88432 0.94678 1.22480 0.91988 1.04546 1.00035 1.25556 0.92455 0.72076 0.87831 1.90439 1.65597 1.38309 1.41156 1.21861 0.96024 1.01552 0.93845 0.88350 1.19432 0.92191 0.95435 0.96291 1.21220 0.92232 1.24961 1.15334 0.95938 1.25993 0.99725 0.97070 0.97149 1.70084 1.11363 1.43552 1.34977 0.85692 0.77915 0.80054 0.79177 1.18014 1.21298 1.17740 1.21510 0.87474 0.96863 0.95135 0.95057 1.21955 1.01347 1.01989 0.94782 1.61834 1.04237 1.57034 1.03519 1.22637 1.00718 0.97900 0.91827 0.91015 0.90978 0.90458 0.86723 0.88799 0.97853 0.94359 0.92822 0.92522 0.89867 0.91259 0.88903 0.89876 0.95581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.63 71.98 0.62 -1.50 16 2 C 0.09 2.05 2.51 45.03 0.11 2.17 16 3 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 4 C -0.15 -4.38 5.64 30.18 0.17 -4.21 16 5 C 0.34 14.34 6.40 29.57 0.19 14.53 16 6 O -0.48 -25.44 15.70 -1.47 -0.02 -25.46 16 7 C -0.11 -4.55 2.04 -11.21 -0.02 -4.57 16 8 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 9 C 0.00 0.21 3.11 29.85 0.09 0.30 16 10 C -0.50 -30.70 8.18 25.60 0.21 -30.49 16 11 H 0.02 1.54 7.70 -2.91 -0.02 1.52 16 12 C 0.00 -0.27 5.47 84.65 0.46 0.19 16 13 N -0.96 -64.00 13.96 21.45 0.30 -63.70 16 14 Si 0.95 46.90 27.47 68.60 1.88 48.78 16 15 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 17 H -0.25 -11.84 6.54 99.48 0.65 -11.19 16 18 C 0.10 2.96 1.98 45.03 0.09 3.05 16 19 H 0.03 1.00 8.10 -2.39 -0.02 0.98 16 20 C -0.14 -3.64 8.41 71.98 0.61 -3.03 16 21 N -0.54 -12.94 4.56 -870.97 -3.97 -16.91 16 22 C 0.02 0.27 8.42 127.69 1.08 1.34 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.08 0.94 6.23 -2.38 -0.01 0.92 16 26 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.00 0.16 7.20 -2.39 -0.02 0.15 16 29 H 0.04 1.74 5.91 -2.38 -0.01 1.73 16 30 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 31 H 0.06 1.58 6.57 -2.39 -0.02 1.56 16 32 H 0.08 1.60 6.30 -2.39 -0.02 1.58 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.20 5.94 -2.38 -0.01 1.18 16 35 H 0.08 1.27 6.15 -2.38 -0.01 1.25 16 36 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -76.90 276.74 2.79 -74.11 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 0.99 Total: 5.40 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 3.61 Total: -22.22 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -3.67 Total: -80.61 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.02 Total: -25.46 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.88 Total: 48.78 kcal Total: -76.90 2.79 -74.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.173 kcal (2) G-P(sol) polarization free energy of solvation -76.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds