Wall clock time and date at job start Mon Mar 30 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46904 * 109.46868 * 2 1 4 4 C 1.46828 * 111.00126 * 45.53222 * 3 2 1 5 5 C 1.53183 * 109.47848 * 185.44558 * 4 3 2 6 6 H 1.08996 * 109.93924 * 178.96493 * 5 4 3 7 7 C 1.53232 * 109.05108 * 58.36111 * 5 4 3 8 8 O 1.42887 * 109.34631 * 299.98082 * 7 5 4 9 9 C 1.42890 * 114.29497 * 299.33779 * 8 7 5 10 10 C 1.53232 * 109.36986 * 60.64051 * 9 8 7 11 11 H 1.08999 * 109.93784 * 180.67106 * 10 9 8 12 12 C 1.46840 * 110.99604 * 170.00008 * 3 2 1 13 13 C 1.53442 * 108.70326 * 301.64068 * 10 9 8 14 14 C 1.50693 * 109.72375 * 299.18348 * 13 10 9 15 15 H 1.08001 * 120.00518 * 5.39607 * 14 13 10 16 16 C 1.37882 * 119.99773 * 185.39070 * 14 13 10 17 17 N 1.31509 * 120.00334 * 9.47859 * 16 14 13 18 18 Si 1.86808 * 119.99887 * 189.47144 * 16 14 13 19 19 H 1.48504 * 109.46911 * 94.98964 * 18 16 14 20 20 H 1.48492 * 109.46986 * 214.99372 * 18 16 14 21 21 H 1.48504 * 109.46910 * 334.99558 * 18 16 14 22 22 H 1.09004 * 109.47430 * 299.99924 * 1 2 3 23 23 H 1.09005 * 109.47573 * 60.00082 * 1 2 3 24 24 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47430 * 240.00076 * 2 1 3 26 26 H 1.09001 * 109.47119 * 119.99773 * 2 1 3 27 27 H 1.09004 * 109.46795 * 65.44478 * 4 3 2 28 28 H 1.08993 * 109.46625 * 305.44875 * 4 3 2 29 29 H 1.08999 * 109.49132 * 180.02562 * 7 5 4 30 30 H 1.09006 * 109.51015 * 59.95454 * 7 5 4 31 31 H 1.09003 * 109.48939 * 300.67572 * 9 8 7 32 32 H 1.09000 * 109.50195 * 180.62123 * 9 8 7 33 33 H 1.08997 * 109.47551 * 54.54204 * 12 3 2 34 34 H 1.08994 * 109.47498 * 294.52464 * 12 3 2 35 35 H 1.09001 * 109.72226 * 178.51712 * 13 10 9 36 36 H 0.96994 * 120.00115 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.2896 2.2012 0.9782 5 6 1.7311 3.6628 0.8548 6 1 1.1802 4.2788 1.5656 7 6 1.4632 4.1473 -0.5740 8 8 2.2022 3.3410 -1.4935 9 6 3.6183 3.3847 -1.3074 10 6 3.9623 2.8740 0.0958 11 1 5.0403 2.9145 0.2521 12 6 3.4678 1.4311 0.2381 13 6 3.2385 3.7479 1.1287 14 6 3.6993 5.1767 0.9983 15 1 4.3689 5.4574 0.1988 16 6 3.2659 6.1258 1.8997 17 7 2.6059 5.7576 2.9759 18 14 3.6165 7.9348 1.5923 19 1 2.4500 8.5571 0.9160 20 1 3.8608 8.6186 2.8875 21 1 4.8174 8.0664 0.7287 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5040 1.8406 1.9843 28 1 0.2192 2.1275 0.7862 29 1 1.7754 5.1872 -0.6700 30 1 0.3985 4.0654 -0.7926 31 1 3.9679 4.4113 -1.4165 32 1 4.1029 2.7542 -2.0528 33 1 3.9761 0.7993 -0.4903 34 1 3.6823 1.0710 1.2442 35 1 3.4510 3.3824 2.1333 36 1 2.3013 6.4253 3.6102 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260904668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:59 Heat of formation + Delta-G solvation = -38.543955 kcal Electronic energy + Delta-G solvation = -17201.994411 eV Core-core repulsion = 14686.065291 eV Total energy + Delta-G solvation = -2515.929119 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63840 -36.06288 -33.65561 -32.11336 -31.28272 -29.30571 -25.97105 -25.53379 -23.67800 -22.63162 -21.20787 -20.26837 -17.64313 -16.12795 -15.69081 -14.85706 -14.59863 -14.40430 -14.20219 -13.73240 -13.68585 -12.96047 -12.59322 -12.38167 -11.87382 -11.64746 -11.46244 -11.09228 -10.92108 -10.83166 -10.75844 -10.47280 -10.44276 -10.00011 -9.96381 -9.31833 -8.90908 -8.68883 -8.53203 -8.05134 -7.30325 -6.05593 -4.06255 3.27952 3.35998 3.38701 4.41232 4.55614 5.07197 5.26091 5.38932 5.50324 5.68406 5.79468 5.81815 5.97445 6.07826 6.10333 6.17790 6.32762 6.34058 6.40360 6.44171 6.51418 6.55661 6.65494 6.71615 6.76853 6.99035 7.01542 7.41746 7.50999 7.76305 7.88280 7.89733 7.97616 8.38733 8.47462 8.96089 9.56537 11.03467 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040910 B = 0.009751 C = 0.009252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.265858 B = 2870.888064 C = 3025.556265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 N -0.512 5.512 4 C 0.062 3.938 5 C -0.108 4.108 6 H 0.088 0.912 7 C 0.089 3.911 8 O -0.367 6.367 9 C 0.088 3.912 10 C -0.118 4.118 11 H 0.067 0.933 12 C 0.070 3.930 13 C 0.057 3.943 14 C -0.513 4.513 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.883 3.117 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.031 0.969 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -7.400 -4.800 9.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 N -0.237 5.237 4 C -0.065 4.065 5 C -0.127 4.127 6 H 0.106 0.894 7 C 0.012 3.988 8 O -0.285 6.285 9 C 0.011 3.989 10 C -0.137 4.137 11 H 0.086 0.914 12 C -0.058 4.058 13 C 0.038 3.962 14 C -0.551 4.551 15 H 0.075 0.925 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.711 3.289 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.294 -7.244 -5.241 9.230 hybrid contribution 0.459 0.815 1.127 1.465 sum -1.835 -6.428 -4.114 7.849 Atomic orbital electron populations 1.21899 0.95685 1.00772 1.02582 1.22028 0.95360 0.90815 0.99440 1.61952 1.03422 1.08027 1.50290 1.22256 0.97323 0.95186 0.91786 1.21903 1.01003 0.92595 0.97244 0.89390 1.22257 0.93669 0.93812 0.89096 1.87772 1.16852 1.69146 1.54718 1.22202 0.82761 0.99036 0.94889 1.22000 0.99442 0.93774 0.98498 0.91439 1.22045 0.88251 0.97774 0.97695 1.18781 0.89879 0.94052 0.93458 1.21131 1.28558 0.92943 1.12430 0.92487 1.24939 0.95370 0.98663 0.94618 1.69963 1.38847 1.33482 1.10242 0.86720 0.78681 0.85866 0.77655 1.20650 1.21352 1.19874 0.92448 0.91817 0.93154 0.91626 0.96286 0.96349 0.91824 0.93371 0.92119 0.93645 0.91894 0.92449 0.96184 0.95075 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.15 37.15 0.34 -1.73 16 2 C 0.05 0.80 6.00 -3.83 -0.02 0.77 16 3 N -0.51 -9.51 3.03 -234.50 -0.71 -10.22 16 4 C 0.06 1.23 4.28 -3.77 -0.02 1.22 16 5 C -0.11 -2.45 2.73 -90.18 -0.25 -2.70 16 6 H 0.09 2.22 7.12 -51.93 -0.37 1.85 16 7 C 0.09 1.91 6.04 37.28 0.23 2.14 16 8 O -0.37 -7.82 9.03 -35.23 -0.32 -8.13 16 9 C 0.09 1.78 6.03 37.28 0.22 2.01 16 10 C -0.12 -2.46 2.88 -90.17 -0.26 -2.72 16 11 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.07 1.32 4.88 -3.76 -0.02 1.30 16 13 C 0.06 1.38 1.78 -91.32 -0.16 1.22 16 14 C -0.51 -13.51 6.69 -34.44 -0.23 -13.74 16 15 H 0.06 1.50 6.59 -52.49 -0.35 1.15 16 16 C 0.07 1.78 5.23 -17.82 -0.09 1.68 16 17 N -0.89 -24.88 12.31 55.43 0.68 -24.19 16 18 Si 0.88 20.89 29.55 -169.99 -5.02 15.87 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H 0.06 0.81 6.22 -51.93 -0.32 0.48 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.17 5.84 -51.93 -0.30 0.87 16 29 H 0.05 1.12 7.27 -51.93 -0.38 0.74 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.96 6.59 -51.93 -0.34 0.62 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 268.30 15.07 4.04 4.04 Total: -1.00 -27.68 268.30 -7.43 -35.10 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.84 Total: -1.92 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.26 Total: -10.55 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.03 Total: -34.41 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.32 Total: -8.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.68 -7.43 -35.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260904668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.439 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds