Wall clock time and date at job start Mon Mar 30 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46904 * 109.46868 * 2 1 4 4 C 1.46828 * 111.00126 * 45.53222 * 3 2 1 5 5 C 1.53183 * 109.47848 * 185.44558 * 4 3 2 6 6 H 1.08996 * 109.93924 * 178.96493 * 5 4 3 7 7 C 1.53232 * 109.05108 * 58.36111 * 5 4 3 8 8 O 1.42887 * 109.34631 * 299.98082 * 7 5 4 9 9 C 1.42890 * 114.29497 * 299.33779 * 8 7 5 10 10 C 1.53232 * 109.36986 * 60.64051 * 9 8 7 11 11 H 1.08999 * 109.93784 * 180.67106 * 10 9 8 12 12 C 1.46840 * 110.99604 * 170.00008 * 3 2 1 13 13 C 1.53442 * 108.70326 * 301.64068 * 10 9 8 14 14 C 1.50693 * 109.72375 * 299.18348 * 13 10 9 15 15 H 1.08001 * 120.00518 * 5.39607 * 14 13 10 16 16 C 1.37882 * 119.99773 * 185.39070 * 14 13 10 17 17 N 1.31509 * 120.00334 * 9.47859 * 16 14 13 18 18 Si 1.86808 * 119.99887 * 189.47144 * 16 14 13 19 19 H 1.48504 * 109.46911 * 94.98964 * 18 16 14 20 20 H 1.48492 * 109.46986 * 214.99372 * 18 16 14 21 21 H 1.48504 * 109.46910 * 334.99558 * 18 16 14 22 22 H 1.09004 * 109.47430 * 299.99924 * 1 2 3 23 23 H 1.09005 * 109.47573 * 60.00082 * 1 2 3 24 24 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47430 * 240.00076 * 2 1 3 26 26 H 1.09001 * 109.47119 * 119.99773 * 2 1 3 27 27 H 1.09004 * 109.46795 * 65.44478 * 4 3 2 28 28 H 1.08993 * 109.46625 * 305.44875 * 4 3 2 29 29 H 1.08999 * 109.49132 * 180.02562 * 7 5 4 30 30 H 1.09006 * 109.51015 * 59.95454 * 7 5 4 31 31 H 1.09003 * 109.48939 * 300.67572 * 9 8 7 32 32 H 1.09000 * 109.50195 * 180.62123 * 9 8 7 33 33 H 1.08997 * 109.47551 * 54.54204 * 12 3 2 34 34 H 1.08994 * 109.47498 * 294.52464 * 12 3 2 35 35 H 1.09001 * 109.72226 * 178.51712 * 13 10 9 36 36 H 0.96994 * 120.00115 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.2896 2.2012 0.9782 5 6 1.7311 3.6628 0.8548 6 1 1.1802 4.2788 1.5656 7 6 1.4632 4.1473 -0.5740 8 8 2.2022 3.3410 -1.4935 9 6 3.6183 3.3847 -1.3074 10 6 3.9623 2.8740 0.0958 11 1 5.0403 2.9145 0.2521 12 6 3.4678 1.4311 0.2381 13 6 3.2385 3.7479 1.1287 14 6 3.6993 5.1767 0.9983 15 1 4.3689 5.4574 0.1988 16 6 3.2659 6.1258 1.8997 17 7 2.6059 5.7576 2.9759 18 14 3.6165 7.9348 1.5923 19 1 2.4500 8.5571 0.9160 20 1 3.8608 8.6186 2.8875 21 1 4.8174 8.0664 0.7287 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5040 1.8406 1.9843 28 1 0.2192 2.1275 0.7862 29 1 1.7754 5.1872 -0.6700 30 1 0.3985 4.0654 -0.7926 31 1 3.9679 4.4113 -1.4165 32 1 4.1029 2.7542 -2.0528 33 1 3.9761 0.7993 -0.4903 34 1 3.6823 1.0710 1.2442 35 1 3.4510 3.3824 2.1333 36 1 2.3013 6.4253 3.6102 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260904668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:59 Heat of formation + Delta-G solvation = -55.224346 kcal Electronic energy + Delta-G solvation = -17202.717727 eV Core-core repulsion = 14686.065291 eV Total energy + Delta-G solvation = -2516.652436 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.30518 -37.56551 -35.51813 -33.81480 -33.04580 -30.76633 -27.73581 -27.24839 -25.27759 -24.36617 -22.87266 -21.70022 -19.41225 -18.02972 -17.39755 -16.51491 -16.40076 -16.04549 -15.65432 -15.29756 -15.22854 -14.68198 -14.37254 -13.88530 -13.53534 -13.34051 -12.93285 -12.78211 -12.61079 -12.40575 -12.28952 -12.16557 -11.95202 -11.74933 -11.65315 -11.17000 -10.73968 -10.55883 -10.37536 -9.86692 -8.82924 -8.12982 -6.19389 1.38350 1.41183 1.49573 2.42263 3.10375 3.17576 3.44259 4.07047 4.15947 4.23299 4.30304 4.42251 4.45834 4.57198 4.67837 4.74411 4.79362 4.83376 4.83759 4.95947 5.02324 5.04361 5.09037 5.21619 5.22544 5.26410 5.39139 5.58204 5.63707 5.82797 5.89992 6.33855 6.36286 6.46743 6.75576 6.90129 7.46231 8.95698 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040910 B = 0.009751 C = 0.009252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.265858 B = 2870.888064 C = 3025.556265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 N -0.518 5.518 4 C 0.072 3.928 5 C -0.106 4.106 6 H 0.054 0.946 7 C 0.097 3.903 8 O -0.364 6.364 9 C 0.090 3.910 10 C -0.118 4.118 11 H 0.069 0.931 12 C 0.074 3.926 13 C 0.054 3.946 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.019 3.981 17 N -0.918 5.918 18 Si 0.941 3.059 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.268 1.268 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.022 0.978 27 H 0.001 0.999 28 H 0.081 0.919 29 H 0.027 0.973 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.010 0.990 35 H -0.013 1.013 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 -8.412 -6.487 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.242 5.242 4 C -0.055 4.055 5 C -0.126 4.126 6 H 0.073 0.927 7 C 0.019 3.981 8 O -0.282 6.282 9 C 0.013 3.987 10 C -0.137 4.137 11 H 0.087 0.913 12 C -0.054 4.054 13 C 0.036 3.964 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.180 4.180 17 N -0.557 5.557 18 Si 0.767 3.233 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.192 1.192 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.040 0.960 27 H 0.019 0.981 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.028 0.972 35 H 0.006 0.994 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.448 -8.267 -6.942 11.069 hybrid contribution 0.542 1.087 1.667 2.062 sum -1.906 -7.180 -5.275 9.111 Atomic orbital electron populations 1.21857 0.94299 1.02385 1.01913 1.22162 0.96570 0.88753 1.00348 1.61953 1.03077 1.09980 1.49236 1.22078 0.98486 0.93525 0.91460 1.21740 0.99366 0.94258 0.97221 0.92734 1.22141 0.94883 0.92651 0.88376 1.87771 1.17371 1.68774 1.54308 1.22277 0.82343 0.98951 0.95106 1.21957 0.99203 0.94701 0.97831 0.91311 1.22011 0.88824 0.96483 0.98111 1.18707 0.91665 0.93704 0.92342 1.21418 1.28175 0.94233 1.12007 0.92724 1.25634 0.95452 1.02430 0.94463 1.70086 1.40047 1.34533 1.11057 0.85797 0.78704 0.81309 0.77457 1.20184 1.21314 1.19216 0.93348 0.92151 0.90501 0.89882 0.96022 0.98105 0.90066 0.95483 0.90028 0.95048 0.88592 0.89554 0.97160 0.99448 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.15 71.98 0.66 -2.90 16 2 C 0.05 1.36 6.00 86.30 0.52 1.88 16 3 N -0.52 -18.12 3.03 -895.83 -2.72 -20.84 16 4 C 0.07 2.85 4.28 86.38 0.37 3.21 16 5 C -0.11 -4.89 2.73 -10.51 -0.03 -4.92 16 6 H 0.05 2.85 7.12 -2.39 -0.02 2.84 16 7 C 0.10 4.10 6.04 72.06 0.44 4.54 16 8 O -0.36 -14.76 9.03 -148.98 -1.35 -16.11 16 9 C 0.09 3.46 6.03 72.06 0.43 3.90 16 10 C -0.12 -4.82 2.88 -10.50 -0.03 -4.85 16 11 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 12 C 0.07 2.63 4.88 86.38 0.42 3.05 16 13 C 0.05 2.71 1.78 -11.24 -0.02 2.69 16 14 C -0.52 -27.95 6.69 25.60 0.17 -27.78 16 15 H 0.05 2.90 6.59 -2.91 -0.02 2.88 16 16 C 0.02 1.05 5.23 84.66 0.44 1.49 16 17 N -0.92 -53.11 12.31 21.45 0.26 -52.84 16 18 Si 0.94 43.36 29.55 68.60 2.03 45.39 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H 0.05 1.25 6.22 -2.38 -0.01 1.23 16 23 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.02 0.60 8.08 -2.39 -0.02 0.58 16 27 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 28 H 0.08 2.89 5.84 -2.39 -0.01 2.87 16 29 H 0.03 1.25 7.27 -2.39 -0.02 1.24 16 30 H 0.08 3.10 8.14 -2.38 -0.02 3.09 16 31 H 0.03 1.29 6.59 -2.39 -0.02 1.28 16 32 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.09 2.61 8.13 -2.39 -0.02 2.59 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H -0.01 -0.73 8.08 -2.39 -0.02 -0.75 16 36 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -59.60 268.30 2.64 -56.96 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.04 Total: 7.13 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 3.37 Total: -19.69 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -2.45 Total: -73.68 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.35 Total: -16.11 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -59.60 2.64 -56.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260904668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.736 kcal (2) G-P(sol) polarization free energy of solvation -59.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds