Wall clock time and date at job start Mon Mar 30 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46838 * 110.99911 * 2 1 4 4 C 1.53084 * 109.49010 * 174.25924 * 3 2 1 5 5 H 1.08999 * 110.01227 * 179.73048 * 4 3 2 6 6 C 1.53090 * 109.29076 * 300.11648 * 4 3 2 7 7 C 1.52986 * 109.45384 * 58.84908 * 6 4 3 8 8 C 1.52985 * 109.57333 * 59.70166 * 7 6 4 9 9 C 1.53088 * 109.42592 * 300.27887 * 8 7 6 10 10 H 1.09005 * 109.60649 * 180.56923 * 9 8 7 11 11 C 1.46835 * 110.99728 * 235.71382 * 2 1 3 12 12 C 1.53184 * 109.14141 * 59.43812 * 4 3 2 13 13 O 1.42901 * 109.56592 * 181.81272 * 12 4 3 14 14 C 1.50703 * 109.56248 * 61.58137 * 12 4 3 15 15 H 1.07997 * 119.99863 * 265.08265 * 14 12 4 16 16 C 1.37874 * 119.99885 * 85.36521 * 14 12 4 17 17 N 1.31514 * 119.99899 * 175.84434 * 16 14 12 18 18 Si 1.86802 * 120.00215 * 355.84936 * 16 14 12 19 19 H 1.48500 * 109.47318 * 85.02574 * 18 16 14 20 20 H 1.48499 * 109.46978 * 205.03193 * 18 16 14 21 21 H 1.48502 * 109.46812 * 325.02803 * 18 16 14 22 22 H 1.08998 * 109.47059 * 184.28698 * 1 2 3 23 23 H 1.08999 * 109.46865 * 304.28830 * 1 2 3 24 24 H 1.09003 * 109.47183 * 64.28386 * 1 2 3 25 25 H 1.09006 * 109.46657 * 54.25404 * 3 2 1 26 26 H 1.08999 * 109.47397 * 294.26531 * 3 2 1 27 27 H 1.09002 * 109.47437 * 178.84679 * 6 4 3 28 28 H 1.09002 * 109.47164 * 298.85148 * 6 4 3 29 29 H 1.09000 * 109.45197 * 179.73590 * 7 6 4 30 30 H 1.09004 * 109.45470 * 299.67164 * 7 6 4 31 31 H 1.09005 * 109.48001 * 60.26307 * 8 7 6 32 32 H 1.08997 * 109.48361 * 180.28183 * 8 7 6 33 33 H 1.09003 * 109.46403 * 65.71121 * 11 2 1 34 34 H 1.09004 * 109.46738 * 305.73877 * 11 2 1 35 35 H 0.96701 * 113.99791 * 174.59580 * 13 12 4 36 36 H 0.96994 * 120.00058 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5188 1.3331 0.1444 5 1 3.9191 2.3470 0.1406 6 6 3.8852 0.6411 1.4599 7 6 3.3109 -0.7768 1.4669 8 6 3.8860 -1.5685 0.2909 9 6 3.5188 -0.8703 -1.0211 10 1 3.9186 -1.4376 -1.8616 11 6 1.9952 -0.7722 -1.1326 12 6 4.1145 0.5410 -1.0236 13 8 5.5338 0.4641 -0.8752 14 6 3.7794 1.2280 -2.3224 15 1 2.9142 0.9180 -2.8896 16 6 4.5805 2.2483 -2.7893 17 7 4.3358 2.7926 -3.9612 18 14 6.0135 2.8575 -1.7574 19 1 7.2019 2.0027 -2.0069 20 1 6.3273 4.2614 -2.1259 21 1 5.6504 2.7927 -0.3189 22 1 -0.3633 -1.0248 0.0768 23 1 -0.3633 0.5789 0.8491 24 1 -0.3634 0.4459 -0.9259 25 1 1.5649 1.9252 0.8341 26 1 1.7312 1.8614 -0.9368 27 1 4.9700 0.5944 1.5560 28 1 3.4704 1.2055 2.2951 29 1 3.5758 -1.2711 2.4016 30 1 2.2256 -0.7294 1.3765 31 1 4.9708 -1.6207 0.3837 32 1 3.4720 -2.5768 0.2944 33 1 1.7307 -0.2746 -2.0657 34 1 1.5649 -1.7737 -1.1207 35 1 5.9685 -0.0934 -1.5350 36 1 4.8996 3.5102 -4.2899 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260926150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:58 Heat of formation + Delta-G solvation = -37.152223 kcal Electronic energy + Delta-G solvation = -17629.417182 eV Core-core repulsion = 15113.548413 eV Total energy + Delta-G solvation = -2515.868769 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15369 -35.81343 -33.59466 -32.28125 -31.74936 -29.88221 -26.25220 -25.43833 -24.52808 -21.60367 -21.01414 -20.38089 -17.70820 -16.94510 -15.88952 -15.09890 -14.63782 -14.49674 -13.91671 -13.53109 -12.99369 -12.85877 -12.55165 -12.31260 -11.84254 -11.76393 -11.65149 -11.51321 -10.98522 -10.77646 -10.68986 -10.39035 -10.09861 -10.05605 -9.85842 -9.45829 -9.43810 -8.84361 -8.39917 -8.10757 -7.22355 -6.08557 -4.19100 3.53373 3.59296 3.77993 4.49939 4.60070 5.18335 5.29686 5.44249 5.54403 5.68892 5.83192 5.89158 5.96570 5.98947 6.08028 6.12908 6.22874 6.35732 6.45577 6.50283 6.53641 6.58880 6.68651 6.74835 6.82940 6.90046 7.07466 7.17442 7.33228 7.54395 7.63497 7.70962 7.72233 8.26095 8.77554 8.94645 9.55379 11.00409 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031762 B = 0.013852 C = 0.012121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.351973 B = 2020.883842 C = 2309.505787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.524 5.524 3 C 0.069 3.931 4 C -0.069 4.069 5 H 0.072 0.928 6 C -0.102 4.102 7 C -0.146 4.146 8 C -0.099 4.099 9 C -0.099 4.099 10 H 0.065 0.935 11 C 0.068 3.932 12 C 0.232 3.768 13 O -0.564 6.564 14 C -0.552 4.552 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.946 3.054 19 H -0.294 1.294 20 H -0.331 1.331 21 H -0.265 1.265 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.023 0.977 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.025 0.975 30 H 0.130 0.870 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.364 0.636 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.113 -6.152 8.121 10.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.248 5.248 3 C -0.058 4.058 4 C -0.088 4.088 5 H 0.090 0.910 6 C -0.139 4.139 7 C -0.184 4.184 8 C -0.136 4.136 9 C -0.118 4.118 10 H 0.084 0.916 11 C -0.059 4.059 12 C 0.193 3.807 13 O -0.371 6.371 14 C -0.589 4.589 15 H 0.093 0.907 16 C -0.132 4.132 17 N -0.533 5.533 18 Si 0.783 3.217 19 H -0.222 1.222 20 H -0.263 1.263 21 H -0.191 1.191 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.211 0.789 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.071 -5.863 8.905 11.412 hybrid contribution 0.676 0.416 -0.927 1.220 sum -3.395 -5.447 7.977 10.239 Atomic orbital electron populations 1.22389 0.89149 1.01307 1.00230 1.62416 1.05870 1.14531 1.41985 1.22030 0.95174 0.88122 1.00507 1.21342 0.93497 0.99710 0.94222 0.90970 1.21418 0.99729 0.96380 0.96395 1.22324 1.06771 0.94248 0.95039 1.21369 0.99558 0.97158 0.95536 1.21754 0.94676 0.98756 0.96650 0.91645 1.22012 0.95270 0.96523 0.92108 1.19181 0.77254 0.90590 0.93700 1.86111 1.22584 1.70601 1.57776 1.21431 1.13749 1.18738 1.05030 0.90671 1.25115 0.98091 0.95318 0.94675 1.69979 1.39508 1.25396 1.18450 0.85747 0.81268 0.73769 0.80942 1.22233 1.26344 1.19146 0.92046 0.91956 0.95817 0.92198 0.92889 0.93048 0.94267 0.95638 0.85258 0.93178 0.94091 0.93427 0.92414 0.78851 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.59 60.07 0.58 0.82 16 2 N -0.52 -8.92 1.38 -242.91 -0.34 -9.26 16 3 C 0.07 1.32 4.67 -3.81 -0.02 1.31 16 4 C -0.07 -1.46 2.23 -90.43 -0.20 -1.66 16 5 H 0.07 1.69 5.71 -51.93 -0.30 1.40 16 6 C -0.10 -1.93 5.31 -26.69 -0.14 -2.07 16 7 C -0.15 -2.54 5.57 -26.75 -0.15 -2.68 16 8 C -0.10 -1.72 5.31 -26.69 -0.14 -1.87 16 9 C -0.10 -1.92 2.47 -90.43 -0.22 -2.14 16 10 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 11 C 0.07 1.24 4.67 -3.82 -0.02 1.22 16 12 C 0.23 5.17 0.30 -91.58 -0.03 5.14 16 13 O -0.56 -12.61 6.97 -35.23 -0.25 -12.85 16 14 C -0.55 -14.61 7.27 -34.44 -0.25 -14.86 16 15 H 0.08 2.17 6.44 -52.49 -0.34 1.83 16 16 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 17 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 18 Si 0.95 24.11 24.30 -169.99 -4.13 19.98 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.33 -8.72 7.11 56.52 0.40 -8.32 16 21 H -0.27 -6.67 5.34 56.52 0.30 -6.37 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 26 H 0.05 1.15 7.27 -51.93 -0.38 0.77 16 27 H 0.05 1.04 7.62 -51.93 -0.40 0.64 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.13 2.23 4.75 -62.74 -0.30 1.94 16 31 H 0.05 0.90 7.63 -51.93 -0.40 0.50 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.98 6.39 -51.93 -0.33 0.65 16 34 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 35 H 0.36 7.35 8.96 45.56 0.41 7.75 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 255.25 15.07 3.85 3.85 Total: -1.00 -29.53 255.25 -5.84 -35.37 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.06 Total: 4.05 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.69 Total: -14.88 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.44 Total: -35.51 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.25 Total: -12.85 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.13 Total: 19.98 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.53 -5.84 -35.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.783 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds