Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.46919 * 2 1 4 4 C 1.46822 * 110.99818 * 189.99693 * 3 2 1 5 5 C 1.53963 * 109.12829 * 177.74765 * 4 3 2 6 6 H 1.09004 * 112.74281 * 189.82678 * 5 4 3 7 7 C 1.57918 * 106.85312 * 315.13301 * 5 4 3 8 8 C 1.53976 * 105.84143 * 85.80600 * 7 5 4 9 9 C 1.54703 * 106.10908 * 359.61016 * 8 7 5 10 10 H 1.09005 * 112.85582 * 149.56955 * 9 8 7 11 11 C 1.46825 * 110.99835 * 64.32076 * 3 2 1 12 12 C 1.55293 * 104.15274 * 26.78238 * 9 8 7 13 13 O 1.42903 * 111.10099 * 75.28266 * 12 9 8 14 14 C 1.50708 * 111.09983 * 199.37562 * 12 9 8 15 15 H 1.08004 * 119.99327 * 359.97438 * 14 12 9 16 16 C 1.37872 * 119.99928 * 179.97438 * 14 12 9 17 17 N 1.31511 * 120.00508 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99625 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47379 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46813 * 120.00324 * 18 16 14 21 21 H 1.48500 * 109.47314 * 239.99821 * 18 16 14 22 22 H 1.09004 * 109.47142 * 60.00334 * 1 2 3 23 23 H 1.09005 * 109.47251 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47294 * 299.99748 * 1 2 3 25 25 H 1.09003 * 109.46917 * 239.99796 * 2 1 3 26 26 H 1.09004 * 109.46927 * 120.00421 * 2 1 3 27 27 H 1.09002 * 109.54129 * 297.66414 * 4 3 2 28 28 H 1.08996 * 109.53896 * 57.83222 * 4 3 2 29 29 H 1.09009 * 110.58835 * 326.55950 * 7 5 4 30 30 H 1.08994 * 109.92554 * 204.70698 * 7 5 4 31 31 H 1.09001 * 110.13028 * 240.44368 * 8 7 5 32 32 H 1.09006 * 110.17949 * 118.79971 * 8 7 5 33 33 H 1.08996 * 109.53579 * 302.07951 * 11 3 2 34 34 H 1.08996 * 109.53755 * 62.34133 * 11 3 2 35 35 H 0.96700 * 114.00292 * 180.02562 * 13 12 9 36 36 H 0.96999 * 120.00676 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4677 1.4311 -0.2380 5 6 3.9246 2.9006 -0.2856 6 1 4.9538 3.0110 -0.6272 7 6 2.8790 3.6764 -1.1793 8 6 1.7351 4.0818 -0.2318 9 6 2.1210 3.5382 1.1642 10 1 1.7348 4.1510 1.9788 11 6 1.6349 2.0790 1.2354 12 6 3.6726 3.4818 1.1341 13 8 4.2374 4.7882 1.2621 14 6 4.2027 2.5576 2.2000 15 1 3.5178 2.0418 2.8568 16 6 5.5618 2.3705 2.3365 17 7 6.3957 2.9989 1.5371 18 14 6.2188 1.2254 3.6581 19 1 5.0835 0.6453 4.4196 20 1 6.9982 0.1323 3.0232 21 1 7.0970 1.9876 4.5817 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9864 0.9140 0.5693 28 1 3.6967 0.9471 -1.1874 29 1 2.4988 3.0314 -1.9717 30 1 3.3434 4.5643 -1.6081 31 1 0.7977 3.6345 -0.5625 32 1 1.6410 5.1673 -0.1987 33 1 0.5502 2.0607 1.3411 34 1 2.0943 1.5829 2.0903 35 1 5.2042 4.8019 1.2481 36 1 7.3519 2.8670 1.6329 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260972367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = -46.048068 kcal Electronic energy + Delta-G solvation = -17295.001746 eV Core-core repulsion = 14778.747224 eV Total energy + Delta-G solvation = -2516.254522 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.50297 -35.45530 -33.26130 -32.09136 -30.28303 -29.66030 -27.57858 -24.51698 -23.55671 -22.51554 -20.53552 -19.03352 -18.11526 -16.40016 -15.77096 -15.04330 -14.61884 -14.08154 -13.81515 -13.48189 -13.10438 -12.78761 -12.27573 -11.75418 -11.66306 -11.52599 -11.31653 -11.26305 -10.96311 -10.67239 -10.46049 -10.41798 -10.22678 -10.01003 -9.64136 -9.52544 -9.19869 -8.92727 -8.48664 -7.87237 -7.35453 -6.18988 -4.23775 3.19004 3.28556 3.31560 4.29945 4.67832 5.07140 5.42199 5.61862 5.64105 5.75330 5.84748 5.94398 6.08466 6.19391 6.24531 6.29939 6.33757 6.41629 6.49516 6.57755 6.75391 6.81623 6.89264 6.92999 7.02652 7.09102 7.21997 7.25358 7.46348 7.56322 7.82897 8.01425 8.07587 8.20339 8.75644 9.42474 9.66832 10.87548 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.013163 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.627895 B = 2126.605485 C = 2696.702389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.536 5.536 4 C 0.077 3.923 5 C -0.101 4.101 6 H 0.086 0.914 7 C -0.102 4.102 8 C -0.095 4.095 9 C -0.083 4.083 10 H 0.071 0.929 11 C 0.070 3.930 12 C 0.257 3.743 13 O -0.588 6.588 14 C -0.527 4.527 15 H 0.063 0.937 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.282 1.282 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.381 0.619 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -3.506 -3.097 8.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.261 5.261 4 C -0.051 4.051 5 C -0.121 4.121 6 H 0.104 0.896 7 C -0.140 4.140 8 C -0.133 4.133 9 C -0.102 4.102 10 H 0.089 0.911 11 C -0.058 4.058 12 C 0.217 3.783 13 O -0.398 6.398 14 C -0.565 4.565 15 H 0.081 0.919 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.208 1.208 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.233 0.767 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.335 -3.085 -3.488 8.688 hybrid contribution 1.494 -1.314 1.323 2.389 sum -5.841 -4.399 -2.165 7.626 Atomic orbital electron populations 1.21789 0.95850 1.00502 1.02177 1.21953 0.95203 0.90568 0.99946 1.61685 1.15152 1.12997 1.36289 1.22108 0.85974 0.98096 0.98874 1.23479 0.97207 0.93009 0.98389 0.89570 1.22553 0.96013 0.98066 0.97356 1.21932 0.97861 0.98053 0.95466 1.22326 0.97488 0.94157 0.96246 0.91058 1.22230 0.97803 0.94730 0.91032 1.19737 0.87370 0.80992 0.90244 1.86047 1.26754 1.30531 1.96439 1.21706 0.91827 1.26194 1.16804 0.91914 1.24969 0.96899 0.95620 0.95585 1.69577 1.03084 1.43088 1.37918 0.86550 0.79005 0.80658 0.81884 1.19840 1.20958 1.20799 0.92298 0.93229 0.92782 0.91770 0.95590 0.92921 0.93746 0.93099 0.94223 0.92952 0.93973 0.92705 0.93403 0.76736 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.80 37.16 0.36 -1.60 16 2 C 0.05 0.83 5.69 -3.83 -0.02 0.81 16 3 N -0.54 -10.19 3.45 -233.51 -0.81 -10.99 16 4 C 0.08 1.63 4.74 -3.36 -0.02 1.61 16 5 C -0.10 -2.33 3.46 -86.11 -0.30 -2.62 16 6 H 0.09 2.16 7.65 -51.93 -0.40 1.76 16 7 C -0.10 -2.10 5.95 -23.53 -0.14 -2.24 16 8 C -0.10 -1.91 5.85 -25.33 -0.15 -2.06 16 9 C -0.08 -1.82 3.68 -88.00 -0.32 -2.14 16 10 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 11 C 0.07 1.38 4.46 -3.36 -0.01 1.36 16 12 C 0.26 6.32 0.66 -89.24 -0.06 6.26 16 13 O -0.59 -15.60 13.05 -35.23 -0.46 -16.06 16 14 C -0.53 -13.76 5.75 -34.44 -0.20 -13.96 16 15 H 0.06 1.66 5.88 -52.48 -0.31 1.35 16 16 C 0.07 1.84 5.24 -17.82 -0.09 1.75 16 17 N -0.90 -23.70 10.66 55.43 0.59 -23.11 16 18 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.74 6.46 -51.93 -0.34 0.40 16 25 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.25 6.54 -51.93 -0.34 0.91 16 28 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 29 H 0.05 0.99 7.84 -51.92 -0.41 0.58 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.97 7.80 -51.93 -0.41 0.57 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.97 6.32 -51.93 -0.33 0.64 16 34 H 0.05 1.04 5.65 -51.93 -0.29 0.75 16 35 H 0.38 10.31 6.92 45.56 0.32 10.62 16 36 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 267.65 15.07 4.03 4.03 Total: -1.00 -26.50 267.65 -7.62 -34.12 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.01 Total: 9.28 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -0.95 Total: -12.82 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: -0.21 Total: -34.10 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.46 Total: -16.06 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.50 -7.62 -34.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.926 kcal (2) G-P(sol) polarization free energy of solvation -26.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds