Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.46919 * 2 1 4 4 C 1.46822 * 110.99818 * 189.99693 * 3 2 1 5 5 C 1.53963 * 109.12829 * 177.74765 * 4 3 2 6 6 H 1.09004 * 112.74281 * 189.82678 * 5 4 3 7 7 C 1.57918 * 106.85312 * 315.13301 * 5 4 3 8 8 C 1.53976 * 105.84143 * 85.80600 * 7 5 4 9 9 C 1.54703 * 106.10908 * 359.61016 * 8 7 5 10 10 H 1.09005 * 112.85582 * 149.56955 * 9 8 7 11 11 C 1.46825 * 110.99835 * 64.32076 * 3 2 1 12 12 C 1.55293 * 104.15274 * 26.78238 * 9 8 7 13 13 O 1.42903 * 111.10099 * 75.28266 * 12 9 8 14 14 C 1.50708 * 111.09983 * 199.37562 * 12 9 8 15 15 H 1.08004 * 119.99327 * 359.97438 * 14 12 9 16 16 C 1.37872 * 119.99928 * 179.97438 * 14 12 9 17 17 N 1.31511 * 120.00508 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99625 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47379 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46813 * 120.00324 * 18 16 14 21 21 H 1.48500 * 109.47314 * 239.99821 * 18 16 14 22 22 H 1.09004 * 109.47142 * 60.00334 * 1 2 3 23 23 H 1.09005 * 109.47251 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47294 * 299.99748 * 1 2 3 25 25 H 1.09003 * 109.46917 * 239.99796 * 2 1 3 26 26 H 1.09004 * 109.46927 * 120.00421 * 2 1 3 27 27 H 1.09002 * 109.54129 * 297.66414 * 4 3 2 28 28 H 1.08996 * 109.53896 * 57.83222 * 4 3 2 29 29 H 1.09009 * 110.58835 * 326.55950 * 7 5 4 30 30 H 1.08994 * 109.92554 * 204.70698 * 7 5 4 31 31 H 1.09001 * 110.13028 * 240.44368 * 8 7 5 32 32 H 1.09006 * 110.17949 * 118.79971 * 8 7 5 33 33 H 1.08996 * 109.53579 * 302.07951 * 11 3 2 34 34 H 1.08996 * 109.53755 * 62.34133 * 11 3 2 35 35 H 0.96700 * 114.00292 * 180.02562 * 13 12 9 36 36 H 0.96999 * 120.00676 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4677 1.4311 -0.2380 5 6 3.9246 2.9006 -0.2856 6 1 4.9538 3.0110 -0.6272 7 6 2.8790 3.6764 -1.1793 8 6 1.7351 4.0818 -0.2318 9 6 2.1210 3.5382 1.1642 10 1 1.7348 4.1510 1.9788 11 6 1.6349 2.0790 1.2354 12 6 3.6726 3.4818 1.1341 13 8 4.2374 4.7882 1.2621 14 6 4.2027 2.5576 2.2000 15 1 3.5178 2.0418 2.8568 16 6 5.5618 2.3705 2.3365 17 7 6.3957 2.9989 1.5371 18 14 6.2188 1.2254 3.6581 19 1 5.0835 0.6453 4.4196 20 1 6.9982 0.1323 3.0232 21 1 7.0970 1.9876 4.5817 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.9864 0.9140 0.5693 28 1 3.6967 0.9471 -1.1874 29 1 2.4988 3.0314 -1.9717 30 1 3.3434 4.5643 -1.6081 31 1 0.7977 3.6345 -0.5625 32 1 1.6410 5.1673 -0.1987 33 1 0.5502 2.0607 1.3411 34 1 2.0943 1.5829 2.0903 35 1 5.2042 4.8019 1.2481 36 1 7.3519 2.8670 1.6329 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = -63.202012 kcal Electronic energy + Delta-G solvation = -17295.745597 eV Core-core repulsion = 14778.747224 eV Total energy + Delta-G solvation = -2516.998373 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20794 -37.14999 -35.01167 -34.09486 -31.94608 -31.12206 -29.35069 -26.30192 -25.20426 -24.13825 -22.00571 -20.74235 -19.95083 -18.34181 -17.40882 -16.97708 -16.28275 -15.80231 -15.35128 -15.10720 -14.67676 -14.49248 -13.91185 -13.56981 -13.30215 -13.14765 -12.88035 -12.75864 -12.63658 -12.39516 -12.24655 -12.12794 -11.79413 -11.69574 -11.32092 -11.21256 -10.89476 -10.82055 -10.42930 -9.81806 -8.95223 -8.18325 -6.28422 1.33437 1.38190 1.46429 2.36594 3.05965 3.18146 3.89357 4.06965 4.08494 4.31304 4.40913 4.51721 4.58371 4.62429 4.70154 4.73736 4.89169 5.03114 5.06098 5.12185 5.17632 5.22528 5.26540 5.28482 5.34176 5.43327 5.47687 5.54092 5.63738 5.77324 5.91243 6.22497 6.41530 6.47776 6.73968 7.39508 7.57536 8.86970 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.013163 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.627895 B = 2126.605485 C = 2696.702389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.085 3.915 5 C -0.104 4.104 6 H 0.057 0.943 7 C -0.094 4.094 8 C -0.087 4.087 9 C -0.089 4.089 10 H 0.065 0.935 11 C 0.077 3.923 12 C 0.238 3.762 13 O -0.600 6.600 14 C -0.538 4.538 15 H 0.054 0.946 16 C 0.031 3.969 17 N -0.914 5.914 18 Si 0.945 3.055 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.281 1.281 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.016 0.984 27 H 0.022 0.978 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.024 0.976 35 H 0.374 0.626 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 -4.508 -3.652 10.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 N -0.255 5.255 4 C -0.043 4.043 5 C -0.123 4.123 6 H 0.075 0.925 7 C -0.132 4.132 8 C -0.125 4.125 9 C -0.108 4.108 10 H 0.083 0.917 11 C -0.050 4.050 12 C 0.199 3.801 13 O -0.409 6.409 14 C -0.576 4.576 15 H 0.072 0.928 16 C -0.168 4.168 17 N -0.555 5.555 18 Si 0.772 3.228 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.207 1.207 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.224 0.776 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.973 -4.093 -4.044 10.659 hybrid contribution 2.005 -1.005 1.501 2.698 sum -6.968 -5.098 -2.543 9.001 Atomic orbital electron populations 1.21732 0.93319 1.02185 1.02258 1.22114 0.97221 0.88628 1.00095 1.61726 1.13276 1.14954 1.35518 1.21924 0.87330 0.96550 0.98462 1.23335 0.96498 0.94629 0.97873 0.92485 1.22497 0.95420 0.97866 0.97393 1.21884 0.98420 0.98210 0.93942 1.22381 0.95360 0.95736 0.97282 0.91699 1.22144 0.99148 0.93195 0.90546 1.20060 0.89189 0.80013 0.90888 1.86037 1.26207 1.32029 1.96620 1.21863 0.92031 1.26462 1.17205 0.92775 1.25563 0.97185 0.96844 0.97236 1.69659 1.03167 1.43835 1.38818 0.85709 0.78252 0.79104 0.79756 1.19830 1.20614 1.20709 0.91784 0.90877 0.93006 0.90577 0.96543 0.95977 0.92263 0.91401 0.94559 0.90695 0.93902 0.89821 0.95777 0.77569 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.80 71.98 0.71 -2.48 16 2 C 0.05 1.40 5.69 86.30 0.49 1.89 16 3 N -0.53 -19.02 3.45 -892.68 -3.08 -22.10 16 4 C 0.09 3.56 4.74 86.64 0.41 3.97 16 5 C -0.10 -4.76 3.46 -7.87 -0.03 -4.79 16 6 H 0.06 2.92 7.65 -2.38 -0.02 2.90 16 7 C -0.09 -3.72 5.95 32.67 0.19 -3.53 16 8 C -0.09 -3.29 5.85 31.50 0.18 -3.11 16 9 C -0.09 -3.79 3.68 -9.10 -0.03 -3.82 16 10 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 11 C 0.08 2.94 4.46 86.65 0.39 3.33 16 12 C 0.24 11.82 0.66 -9.90 -0.01 11.81 16 13 O -0.60 -32.44 13.05 -148.98 -1.94 -34.38 16 14 C -0.54 -28.48 5.75 25.60 0.15 -28.33 16 15 H 0.05 2.91 5.88 -2.91 -0.02 2.89 16 16 C 0.03 1.65 5.24 84.65 0.44 2.09 16 17 N -0.91 -49.30 10.66 21.44 0.23 -49.07 16 18 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.05 1.22 6.46 -2.39 -0.02 1.21 16 25 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 26 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.02 1.05 6.54 -2.39 -0.02 1.04 16 28 H 0.06 2.27 8.09 -2.39 -0.02 2.25 16 29 H 0.07 2.44 7.84 -2.38 -0.02 2.43 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 2.51 7.80 -2.39 -0.02 2.49 16 32 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.08 2.71 6.32 -2.39 -0.02 2.70 16 34 H 0.02 1.04 5.65 -2.39 -0.01 1.02 16 35 H 0.37 20.87 6.92 -74.06 -0.51 20.36 16 36 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -56.23 267.65 0.68 -55.56 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.55 Total: 28.30 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 2.90 Total: -22.97 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -2.85 Total: -71.16 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.94 Total: -34.38 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -56.23 0.68 -55.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.647 kcal (2) G-P(sol) polarization free energy of solvation -56.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds