Wall clock time and date at job start Mon Mar 30 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 119.99927 * 2 1 4 4 N 1.34779 * 120.00038 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00120 * 355.28570 * 4 2 1 6 6 C 1.46508 * 120.00106 * 175.28954 * 4 2 1 7 7 H 1.08998 * 110.01270 * 359.93381 * 6 4 2 8 8 C 1.54262 * 110.03140 * 238.54545 * 6 4 2 9 9 C 1.54891 * 104.19270 * 217.10672 * 8 6 4 10 10 C 1.54883 * 102.75238 * 37.94248 * 9 8 6 11 11 H 1.08999 * 110.48781 * 80.73573 * 10 9 8 12 12 C 1.52999 * 110.60040 * 203.32830 * 10 9 8 13 13 C 1.50706 * 109.46700 * 289.83869 * 12 10 9 14 14 H 1.07998 * 119.99963 * 359.97438 * 13 12 10 15 15 C 1.37872 * 119.99714 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00429 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46955 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47016 * 119.99968 * 17 15 13 20 20 H 1.48498 * 109.47282 * 240.00056 * 17 15 13 21 21 C 1.53873 * 110.03141 * 121.37565 * 6 4 2 22 22 H 1.09004 * 109.47056 * 185.20919 * 1 2 3 23 23 H 1.09002 * 109.46916 * 305.19804 * 1 2 3 24 24 H 1.08995 * 109.47322 * 65.20441 * 1 2 3 25 25 H 1.08999 * 109.47561 * 275.49475 * 5 4 2 26 26 H 1.09008 * 109.47102 * 35.48992 * 5 4 2 27 27 H 1.09002 * 109.47700 * 155.48729 * 5 4 2 28 28 H 1.09003 * 110.48746 * 335.78430 * 8 6 4 29 29 H 1.08993 * 110.48741 * 98.42519 * 8 6 4 30 30 H 1.08997 * 110.75435 * 156.26050 * 9 8 6 31 31 H 1.09000 * 110.75061 * 279.62296 * 9 8 6 32 32 H 1.08995 * 109.47211 * 49.83405 * 12 10 9 33 33 H 1.08998 * 109.47182 * 169.83721 * 12 10 9 34 34 H 0.96998 * 120.00342 * 179.97438 * 16 15 13 35 35 H 1.08995 * 110.03246 * 238.57367 * 21 6 4 36 36 H 1.08999 * 110.03396 * 359.94970 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4522 -2.4338 0.1032 6 6 3.6422 -1.1693 -0.1047 7 1 4.0127 -0.1466 -0.1740 8 6 4.0825 -1.9760 -1.3438 9 6 5.3724 -2.7010 -0.8862 10 6 5.0492 -3.0812 0.5800 11 1 4.4385 -3.9834 0.6144 12 6 6.3374 -3.2772 1.3819 13 6 7.0310 -4.5326 0.9191 14 1 6.5962 -5.1310 0.1322 15 6 8.2200 -4.9178 1.5011 16 7 8.7493 -4.1894 2.4598 17 14 9.0794 -6.4743 0.9281 18 1 8.2850 -7.1082 -0.1546 19 1 10.4308 -6.1334 0.4153 20 1 9.2059 -7.4181 2.0675 21 6 4.2568 -1.8720 1.1185 22 1 -0.3633 -1.0235 0.0933 23 1 -0.3633 0.5924 0.8398 24 1 -0.3634 0.4310 -0.9329 25 1 1.2591 -2.6572 1.1524 26 1 0.5055 -2.3532 -0.4312 27 1 2.0494 -3.2336 -0.3347 28 1 3.3156 -2.6997 -1.6201 29 1 4.2959 -1.3077 -2.1779 30 1 5.5477 -3.5934 -1.4870 31 1 6.2297 -2.0293 -0.9312 32 1 6.9947 -2.4214 1.2284 33 1 6.0962 -3.3647 2.4412 34 1 9.5856 -4.4605 2.8695 35 1 4.9264 -1.1906 1.6432 36 1 3.4679 -2.2107 1.7901 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261020916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:58 Heat of formation + Delta-G solvation = -54.855695 kcal Electronic energy + Delta-G solvation = -15816.276077 eV Core-core repulsion = 13299.639627 eV Total energy + Delta-G solvation = -2516.636450 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01806 -37.66278 -34.84002 -32.83541 -30.56736 -29.29522 -27.87870 -26.87296 -25.26559 -22.30262 -20.54108 -19.31321 -18.54437 -17.17214 -16.31544 -16.04889 -15.45083 -14.64098 -14.07716 -13.93277 -13.56702 -13.12961 -12.97480 -12.71088 -12.20523 -12.17947 -11.93354 -11.59088 -11.35367 -11.25919 -10.89877 -10.73035 -10.41484 -10.29372 -10.10712 -9.73774 -9.56890 -9.17834 -9.00206 -8.46532 -8.32971 -5.97809 -3.99693 2.65227 3.10697 3.31302 3.39096 3.42374 4.47029 4.59792 4.98055 5.02938 5.14921 5.17032 5.27281 5.36728 5.41171 5.44869 5.61386 5.75079 5.85681 5.96555 6.04357 6.13503 6.19078 6.37459 6.48780 6.58073 6.80816 6.88891 7.01724 7.18477 7.48706 7.69895 7.85054 8.02359 8.22423 8.45336 9.07400 9.64209 11.13531 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058663 B = 0.005413 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.189522 B = 5171.629301 C = 5263.739398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.508 3.492 3 O -0.553 6.553 4 N -0.607 5.607 5 C 0.073 3.927 6 C 0.132 3.868 7 H 0.097 0.903 8 C -0.135 4.135 9 C -0.105 4.105 10 C -0.080 4.080 11 H 0.059 0.941 12 C 0.028 3.972 13 C -0.514 4.514 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.130 4.130 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.259 0.741 35 H 0.069 0.931 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 3.372 -5.695 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.296 3.704 3 O -0.432 6.432 4 N -0.340 5.340 5 C -0.070 4.070 6 C 0.030 3.970 7 H 0.115 0.885 8 C -0.174 4.174 9 C -0.143 4.143 10 C -0.099 4.099 11 H 0.078 0.922 12 C -0.009 4.009 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.168 4.168 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.156 3.932 -5.575 16.620 hybrid contribution 0.526 -0.993 -0.173 1.137 sum -14.629 2.938 -5.748 15.991 Atomic orbital electron populations 1.21984 0.92323 1.04471 1.04900 1.20796 0.90499 0.83391 0.75684 1.90696 1.70707 1.31254 1.50496 1.48103 1.07530 1.06142 1.72252 1.21827 0.96852 0.86477 1.01856 1.21938 0.77849 1.01373 0.95883 0.88483 1.22794 0.99014 0.98882 0.96667 1.22405 0.95420 0.99487 0.96945 1.22031 0.98329 0.94888 0.94634 0.92231 1.19148 0.90239 0.96836 0.94666 1.21273 1.06149 1.08422 1.19392 0.92675 1.25023 0.97447 0.96912 0.95130 1.69975 1.19560 1.38520 1.25517 0.86591 0.79588 0.83563 0.78574 1.19793 1.21090 1.21113 1.22631 0.99245 0.98631 0.96316 0.90081 0.89051 0.89057 0.92433 0.91198 0.90079 0.91637 0.92118 0.91618 0.91454 0.96417 0.96726 0.93125 0.91276 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 10.00 36.00 0.36 -1.19 16 2 C 0.51 7.04 7.78 -10.99 -0.09 6.96 16 3 O -0.55 -10.12 16.46 5.56 0.09 -10.03 16 4 N -0.61 -8.09 2.76 -172.65 -0.48 -8.57 16 5 C 0.07 0.71 8.75 59.84 0.52 1.24 16 6 C 0.13 2.07 3.30 -66.81 -0.22 1.85 16 7 H 0.10 1.70 6.95 -51.93 -0.36 1.34 16 8 C -0.14 -2.00 6.32 -25.07 -0.16 -2.16 16 9 C -0.10 -1.87 5.99 -24.74 -0.15 -2.02 16 10 C -0.08 -1.58 2.79 -88.96 -0.25 -1.83 16 11 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 12 C 0.03 0.71 4.33 -27.88 -0.12 0.59 16 13 C -0.51 -14.21 8.77 -34.44 -0.30 -14.51 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.13 -2.26 5.86 -25.61 -0.15 -2.41 16 22 H 0.08 0.52 5.49 -51.93 -0.29 0.23 16 23 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 26 H 0.07 0.48 6.14 -51.92 -0.32 0.17 16 27 H 0.08 0.83 6.45 -51.93 -0.33 0.49 16 28 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.28 7.97 -51.93 -0.41 0.87 16 32 H 0.02 0.48 8.03 -51.93 -0.42 0.06 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.29 7.84 -51.93 -0.41 0.89 16 36 H 0.06 0.98 7.29 -51.93 -0.38 0.60 16 LS Contribution 288.13 15.07 4.34 4.34 Total: -1.00 -32.29 288.13 -6.71 -39.00 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.74 Total: -3.06 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.65 Total: -11.99 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.26 Total: -34.76 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.29 -6.71 -39.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.851 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds