Wall clock time and date at job start Mon Mar 30 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 119.99927 * 2 1 4 4 N 1.34779 * 120.00038 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00120 * 355.28570 * 4 2 1 6 6 C 1.46508 * 120.00106 * 175.28954 * 4 2 1 7 7 H 1.08998 * 110.01270 * 359.93381 * 6 4 2 8 8 C 1.54262 * 110.03140 * 238.54545 * 6 4 2 9 9 C 1.54891 * 104.19270 * 217.10672 * 8 6 4 10 10 C 1.54883 * 102.75238 * 37.94248 * 9 8 6 11 11 H 1.08999 * 110.48781 * 80.73573 * 10 9 8 12 12 C 1.52999 * 110.60040 * 203.32830 * 10 9 8 13 13 C 1.50706 * 109.46700 * 289.83869 * 12 10 9 14 14 H 1.07998 * 119.99963 * 359.97438 * 13 12 10 15 15 C 1.37872 * 119.99714 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00429 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46955 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47016 * 119.99968 * 17 15 13 20 20 H 1.48498 * 109.47282 * 240.00056 * 17 15 13 21 21 C 1.53873 * 110.03141 * 121.37565 * 6 4 2 22 22 H 1.09004 * 109.47056 * 185.20919 * 1 2 3 23 23 H 1.09002 * 109.46916 * 305.19804 * 1 2 3 24 24 H 1.08995 * 109.47322 * 65.20441 * 1 2 3 25 25 H 1.08999 * 109.47561 * 275.49475 * 5 4 2 26 26 H 1.09008 * 109.47102 * 35.48992 * 5 4 2 27 27 H 1.09002 * 109.47700 * 155.48729 * 5 4 2 28 28 H 1.09003 * 110.48746 * 335.78430 * 8 6 4 29 29 H 1.08993 * 110.48741 * 98.42519 * 8 6 4 30 30 H 1.08997 * 110.75435 * 156.26050 * 9 8 6 31 31 H 1.09000 * 110.75061 * 279.62296 * 9 8 6 32 32 H 1.08995 * 109.47211 * 49.83405 * 12 10 9 33 33 H 1.08998 * 109.47182 * 169.83721 * 12 10 9 34 34 H 0.96998 * 120.00342 * 179.97438 * 16 15 13 35 35 H 1.08995 * 110.03246 * 238.57367 * 21 6 4 36 36 H 1.08999 * 110.03396 * 359.94970 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4522 -2.4338 0.1032 6 6 3.6422 -1.1693 -0.1047 7 1 4.0127 -0.1466 -0.1740 8 6 4.0825 -1.9760 -1.3438 9 6 5.3724 -2.7010 -0.8862 10 6 5.0492 -3.0812 0.5800 11 1 4.4385 -3.9834 0.6144 12 6 6.3374 -3.2772 1.3819 13 6 7.0310 -4.5326 0.9191 14 1 6.5962 -5.1310 0.1322 15 6 8.2200 -4.9178 1.5011 16 7 8.7493 -4.1894 2.4598 17 14 9.0794 -6.4743 0.9281 18 1 8.2850 -7.1082 -0.1546 19 1 10.4308 -6.1334 0.4153 20 1 9.2059 -7.4181 2.0675 21 6 4.2568 -1.8720 1.1185 22 1 -0.3633 -1.0235 0.0933 23 1 -0.3633 0.5924 0.8398 24 1 -0.3634 0.4310 -0.9329 25 1 1.2591 -2.6572 1.1524 26 1 0.5055 -2.3532 -0.4312 27 1 2.0494 -3.2336 -0.3347 28 1 3.3156 -2.6997 -1.6201 29 1 4.2959 -1.3077 -2.1779 30 1 5.5477 -3.5934 -1.4870 31 1 6.2297 -2.0293 -0.9312 32 1 6.9947 -2.4214 1.2284 33 1 6.0962 -3.3647 2.4412 34 1 9.5856 -4.4605 2.8695 35 1 4.9264 -1.1906 1.6432 36 1 3.4679 -2.2107 1.7901 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261020916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:58 Heat of formation + Delta-G solvation = -74.972792 kcal Electronic energy + Delta-G solvation = -15817.148420 eV Core-core repulsion = 13299.639627 eV Total energy + Delta-G solvation = -2517.508792 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16168 -39.03950 -36.16405 -34.79026 -32.01851 -30.53521 -29.17154 -28.06193 -26.81131 -24.21237 -21.72892 -20.83870 -19.76564 -18.53824 -18.13244 -17.20410 -16.61263 -16.45629 -15.45729 -15.39787 -14.65640 -14.33370 -14.17370 -14.09211 -13.79395 -13.28068 -13.17347 -13.02512 -12.73536 -12.65958 -12.58534 -12.35385 -12.10819 -11.90822 -11.57726 -11.28955 -11.06757 -10.98296 -10.79186 -10.52312 -9.59776 -8.16503 -6.26676 1.41071 1.41617 1.54435 1.61940 2.09926 2.42949 3.17108 3.61350 3.76439 3.90239 4.01998 4.32972 4.42444 4.50568 4.56579 4.62342 4.64057 4.66385 4.73680 4.84721 4.87822 4.99554 5.06276 5.14659 5.19513 5.27785 5.36726 5.45067 5.57677 5.64800 5.80097 5.89957 6.29078 6.48766 6.90714 7.18776 7.42530 8.95809 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.058663 B = 0.005413 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.189522 B = 5171.629301 C = 5263.739398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.497 3.503 3 O -0.609 6.609 4 N -0.607 5.607 5 C 0.064 3.936 6 C 0.137 3.863 7 H 0.072 0.928 8 C -0.118 4.118 9 C -0.103 4.103 10 C -0.073 4.073 11 H 0.070 0.930 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.065 0.935 15 C -0.004 4.004 16 N -0.939 5.939 17 Si 0.962 3.038 18 H -0.258 1.258 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.121 4.121 22 H 0.111 0.889 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.046 0.954 32 H -0.015 1.015 33 H -0.016 1.016 34 H 0.261 0.739 35 H 0.043 0.957 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.872 1.751 -7.209 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.289 3.711 3 O -0.491 6.491 4 N -0.339 5.339 5 C -0.077 4.077 6 C 0.033 3.967 7 H 0.090 0.910 8 C -0.156 4.156 9 C -0.141 4.141 10 C -0.091 4.091 11 H 0.088 0.912 12 C -0.005 4.005 13 C -0.565 4.565 14 H 0.083 0.917 15 C -0.201 4.201 16 N -0.580 5.580 17 Si 0.787 3.213 18 H -0.181 1.181 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.160 4.160 22 H 0.129 0.871 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.003 0.997 33 H 0.002 0.998 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.450 2.280 -7.099 18.976 hybrid contribution 1.235 -0.467 0.355 1.367 sum -16.215 1.813 -6.744 17.655 Atomic orbital electron populations 1.22007 0.87782 1.06747 1.05980 1.21803 0.92621 0.82475 0.74242 1.90675 1.72210 1.33217 1.53000 1.48195 1.06385 1.07681 1.71648 1.22134 0.98029 0.84460 1.03091 1.21611 0.79968 0.99801 0.95286 0.90963 1.22664 0.97712 0.98997 0.96227 1.22322 0.96517 0.99556 0.95695 1.21856 0.95819 0.96295 0.95152 0.91163 1.19040 0.92477 0.95105 0.93833 1.21688 1.06439 1.08971 1.19355 0.91675 1.25992 0.98437 1.00529 0.95177 1.70124 1.20163 1.40671 1.27015 0.85433 0.78266 0.79120 0.78440 1.18131 1.20829 1.20653 1.22489 0.98907 0.97328 0.97270 0.87089 0.88344 0.87560 0.91652 0.87450 0.90161 0.88996 0.91133 0.91285 0.93537 0.99667 0.99751 0.93020 0.93803 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.00 71.23 0.71 -1.59 16 2 C 0.50 12.95 7.78 87.66 0.68 13.63 16 3 O -0.61 -22.37 16.46 -3.03 -0.05 -22.42 16 4 N -0.61 -14.87 2.76 -818.54 -2.26 -17.13 16 5 C 0.06 1.00 8.75 127.77 1.12 2.12 16 6 C 0.14 4.24 3.30 45.71 0.15 4.39 16 7 H 0.07 2.61 6.95 -2.39 -0.02 2.60 16 8 C -0.12 -3.27 6.32 31.67 0.20 -3.07 16 9 C -0.10 -3.64 5.99 31.88 0.19 -3.44 16 10 C -0.07 -2.87 2.79 -9.72 -0.03 -2.90 16 11 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 12 C 0.03 1.71 4.33 29.85 0.13 1.84 16 13 C -0.53 -29.42 8.77 25.60 0.22 -29.19 16 14 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 17 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 C -0.12 -4.28 5.86 31.32 0.18 -4.10 16 22 H 0.11 0.84 5.49 -2.39 -0.01 0.83 16 23 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 0.96 8.06 -2.39 -0.02 0.94 16 26 H 0.11 0.90 6.14 -2.38 -0.01 0.88 16 27 H 0.08 1.31 6.45 -2.39 -0.02 1.29 16 28 H 0.09 2.10 6.30 -2.39 -0.02 2.09 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 1.81 7.97 -2.39 -0.02 1.79 16 32 H -0.02 -0.88 8.03 -2.39 -0.02 -0.90 16 33 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.04 1.74 7.84 -2.39 -0.02 1.72 16 36 H 0.07 2.32 7.29 -2.39 -0.02 2.30 16 Total: -1.00 -72.87 288.13 5.07 -67.80 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 1.04 Total: 5.38 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 4.03 Total: -22.10 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -1.97 Total: -74.80 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.87 5.07 -67.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.174 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds