Wall clock time and date at job start Mon Mar 30 2020 03:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 119.99886 * 2 1 4 4 N 1.34779 * 120.00355 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99966 * 0.02562 * 4 2 1 6 6 C 1.46498 * 120.00421 * 179.97438 * 4 2 1 7 7 H 1.09001 * 110.53779 * 358.84357 * 6 4 2 8 8 C 1.54270 * 110.48741 * 121.45180 * 6 4 2 9 9 C 1.53879 * 106.59679 * 142.28749 * 8 6 4 10 10 C 1.54265 * 106.59700 * 0.02562 * 9 8 6 11 11 H 1.08995 * 110.49199 * 95.19774 * 10 9 8 12 12 C 1.53005 * 110.48072 * 217.70602 * 10 9 8 13 13 C 1.50695 * 109.47088 * 293.54505 * 12 10 9 14 14 H 1.07995 * 120.00496 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99572 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.54887 * 110.49042 * 236.23426 * 6 4 2 22 22 H 1.09001 * 109.47101 * 239.99814 * 1 2 3 23 23 H 1.08998 * 109.47352 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47092 * 120.00190 * 1 2 3 25 25 H 1.09004 * 109.46947 * 270.00104 * 5 4 2 26 26 H 1.09004 * 109.47362 * 29.99549 * 5 4 2 27 27 H 1.08999 * 109.47657 * 149.99777 * 5 4 2 28 28 H 1.08998 * 110.02925 * 23.01085 * 8 6 4 29 29 H 1.08999 * 110.07462 * 261.59918 * 8 6 4 30 30 H 1.08998 * 110.03285 * 240.71694 * 9 8 6 31 31 H 1.09005 * 110.02332 * 119.28863 * 9 8 6 32 32 H 1.09002 * 109.46935 * 173.54470 * 12 10 9 33 33 H 1.08998 * 109.47061 * 53.55264 * 12 10 9 34 34 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 35 35 H 1.08999 * 110.75854 * 85.05966 * 21 6 4 36 36 H 1.09006 * 110.75187 * 321.68936 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4485 -2.4359 0.0005 6 6 3.6459 -1.1672 0.0000 7 1 4.0283 -0.1467 -0.0215 8 6 4.1863 -1.9204 1.2331 9 6 5.4328 -2.6921 0.7653 10 6 5.6066 -2.3803 -0.7355 11 1 6.3074 -1.5574 -0.8755 12 6 6.0849 -3.6233 -1.4886 13 6 7.4771 -3.9803 -1.0356 14 1 7.9713 -3.3810 -0.2854 15 6 8.1200 -5.0723 -1.5792 16 7 7.5185 -5.8018 -2.4932 17 14 9.8455 -5.5153 -1.0173 18 1 9.8348 -5.7946 0.4413 19 1 10.7636 -4.3823 -1.2975 20 1 10.3097 -6.7217 -1.7483 21 6 4.1876 -1.9744 -1.2059 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3634 1.0276 0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 1.2664 -2.7503 1.0282 26 1 0.4962 -2.3058 -0.5136 27 1 2.0377 -3.1957 -0.5129 28 1 3.4341 -2.6163 1.6047 29 1 4.4577 -1.2115 2.0152 30 1 5.2855 -3.7623 0.9101 31 1 6.3092 -2.3569 1.3201 32 1 6.0923 -3.4189 -2.5592 33 1 5.4111 -4.4548 -1.2822 34 1 6.6223 -5.5720 -2.7847 35 1 4.2403 -1.3491 -2.0971 36 1 3.5735 -2.8565 -1.3873 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261020918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:00 Heat of formation + Delta-G solvation = -62.803994 kcal Electronic energy + Delta-G solvation = -15824.701672 eV Core-core repulsion = 13307.720558 eV Total energy + Delta-G solvation = -2516.981114 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03332 -37.74756 -34.98749 -33.10718 -30.51462 -29.24961 -27.89953 -26.86660 -24.95107 -22.44668 -20.66038 -19.32338 -18.74515 -17.15615 -16.67069 -15.89270 -15.56173 -15.01993 -13.88254 -13.66256 -13.50535 -13.11243 -12.95988 -12.78183 -12.70906 -12.34778 -12.12812 -11.76462 -11.36054 -11.18303 -10.91904 -10.66836 -10.41880 -10.17416 -10.03825 -9.79478 -9.76990 -9.44583 -8.65911 -8.37803 -8.29821 -6.32987 -4.01420 2.60485 3.04011 3.45286 3.47020 3.65582 4.54357 4.56688 4.95388 5.01182 5.04879 5.13302 5.17642 5.31868 5.40660 5.44027 5.54178 5.66940 5.79483 5.88609 5.95903 6.03645 6.11925 6.27694 6.44879 6.47404 6.68723 6.82807 6.87619 7.06271 7.40570 7.42901 7.57449 8.16661 8.25851 8.49984 8.92055 9.70261 11.07411 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.059706 B = 0.005410 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.848535 B = 5174.238244 C = 5300.515054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.552 6.552 4 N -0.607 5.607 5 C 0.073 3.927 6 C 0.131 3.869 7 H 0.101 0.899 8 C -0.133 4.133 9 C -0.103 4.103 10 C -0.074 4.074 11 H 0.063 0.937 12 C 0.018 3.982 13 C -0.596 4.596 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 1.067 2.933 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.283 1.283 21 C -0.130 4.130 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.005 0.995 33 H 0.007 0.993 34 H 0.267 0.733 35 H 0.061 0.939 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.636 6.419 5.855 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.431 6.431 4 N -0.340 5.340 5 C -0.070 4.070 6 C 0.028 3.972 7 H 0.119 0.881 8 C -0.172 4.172 9 C -0.141 4.141 10 C -0.093 4.093 11 H 0.082 0.918 12 C -0.019 4.019 13 C -0.634 4.634 14 H 0.067 0.933 15 C -0.190 4.190 16 N -0.552 5.552 17 Si 0.895 3.105 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.209 1.209 21 C -0.168 4.168 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.092 5.883 5.640 14.582 hybrid contribution -1.310 0.960 0.262 1.645 sum -13.402 6.843 5.903 16.164 Atomic orbital electron populations 1.21934 0.92149 1.05092 1.03965 1.20810 0.90556 0.83300 0.75749 1.90697 1.70835 1.31195 1.50350 1.47978 1.07120 1.06115 1.72738 1.21820 0.96937 0.86404 1.01885 1.22123 0.77751 1.01303 0.95977 0.88065 1.22526 0.98615 0.99016 0.96996 1.22020 0.95520 1.00020 0.96567 1.21863 0.93243 0.99800 0.94425 0.91826 1.19252 0.96585 0.91417 0.94664 1.22040 1.00790 1.14909 1.25666 0.93306 1.25813 1.04957 0.93501 0.94715 1.70788 1.15591 1.39993 1.28841 0.83576 0.74886 0.76263 0.75765 1.21508 1.21499 1.20855 1.22973 0.98164 0.99110 0.96579 0.89583 0.89300 0.89479 0.92564 0.91072 0.90128 0.91958 0.92216 0.91405 0.92264 0.97649 0.97495 0.92213 0.92062 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.87 36.00 0.32 -1.15 16 2 C 0.51 6.97 7.78 -10.99 -0.09 6.88 16 3 O -0.55 -10.01 16.45 5.56 0.09 -9.92 16 4 N -0.61 -8.05 2.86 -172.04 -0.49 -8.55 16 5 C 0.07 0.71 9.11 59.85 0.55 1.26 16 6 C 0.13 2.06 3.26 -66.27 -0.22 1.84 16 7 H 0.10 1.77 6.98 -51.93 -0.36 1.41 16 8 C -0.13 -2.03 6.43 -25.61 -0.16 -2.19 16 9 C -0.10 -1.90 5.87 -25.61 -0.15 -2.05 16 10 C -0.07 -1.51 2.85 -88.95 -0.25 -1.77 16 11 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 12 C 0.02 0.45 3.67 -27.88 -0.10 0.34 16 13 C -0.60 -16.75 8.67 -34.44 -0.30 -17.05 16 14 H 0.05 1.35 7.68 -52.49 -0.40 0.95 16 15 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 16 N -0.92 -28.02 13.65 55.43 0.76 -27.27 16 17 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 C -0.13 -2.23 5.85 -24.73 -0.14 -2.37 16 22 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 23 H 0.09 0.75 8.12 -51.93 -0.42 0.32 16 24 H 0.09 0.59 7.40 -51.93 -0.38 0.20 16 25 H 0.06 0.48 7.89 -51.93 -0.41 0.07 16 26 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 27 H 0.08 0.87 6.12 -51.93 -0.32 0.55 16 28 H 0.06 0.87 6.93 -51.93 -0.36 0.51 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.33 7.77 -51.93 -0.40 0.93 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 33 H 0.01 0.18 7.92 -51.93 -0.41 -0.23 16 34 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.14 6.05 -51.93 -0.31 0.82 16 LS Contribution 287.23 15.07 4.33 4.33 Total: -1.00 -32.85 287.23 -6.79 -39.64 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.74 Total: -2.55 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -0.65 Total: -15.96 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.26 Total: -35.82 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.85 -6.79 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.162 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds