Wall clock time and date at job start Mon Mar 30 2020 03:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21281 * 119.99886 * 2 1 4 4 N 1.34779 * 120.00355 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99966 * 0.02562 * 4 2 1 6 6 C 1.46498 * 120.00421 * 179.97438 * 4 2 1 7 7 H 1.09001 * 110.53779 * 358.84357 * 6 4 2 8 8 C 1.54270 * 110.48741 * 121.45180 * 6 4 2 9 9 C 1.53879 * 106.59679 * 142.28749 * 8 6 4 10 10 C 1.54265 * 106.59700 * 0.02562 * 9 8 6 11 11 H 1.08995 * 110.49199 * 95.19774 * 10 9 8 12 12 C 1.53005 * 110.48072 * 217.70602 * 10 9 8 13 13 C 1.50695 * 109.47088 * 293.54505 * 12 10 9 14 14 H 1.07995 * 120.00496 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99572 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.54887 * 110.49042 * 236.23426 * 6 4 2 22 22 H 1.09001 * 109.47101 * 239.99814 * 1 2 3 23 23 H 1.08998 * 109.47352 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47092 * 120.00190 * 1 2 3 25 25 H 1.09004 * 109.46947 * 270.00104 * 5 4 2 26 26 H 1.09004 * 109.47362 * 29.99549 * 5 4 2 27 27 H 1.08999 * 109.47657 * 149.99777 * 5 4 2 28 28 H 1.08998 * 110.02925 * 23.01085 * 8 6 4 29 29 H 1.08999 * 110.07462 * 261.59918 * 8 6 4 30 30 H 1.08998 * 110.03285 * 240.71694 * 9 8 6 31 31 H 1.09005 * 110.02332 * 119.28863 * 9 8 6 32 32 H 1.09002 * 109.46935 * 173.54470 * 12 10 9 33 33 H 1.08998 * 109.47061 * 53.55264 * 12 10 9 34 34 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 35 35 H 1.08999 * 110.75854 * 85.05966 * 21 6 4 36 36 H 1.09006 * 110.75187 * 321.68936 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4485 -2.4359 0.0005 6 6 3.6459 -1.1672 0.0000 7 1 4.0283 -0.1467 -0.0215 8 6 4.1863 -1.9204 1.2331 9 6 5.4328 -2.6921 0.7653 10 6 5.6066 -2.3803 -0.7355 11 1 6.3074 -1.5574 -0.8755 12 6 6.0849 -3.6233 -1.4886 13 6 7.4771 -3.9803 -1.0356 14 1 7.9713 -3.3810 -0.2854 15 6 8.1200 -5.0723 -1.5792 16 7 7.5185 -5.8018 -2.4932 17 14 9.8455 -5.5153 -1.0173 18 1 9.8348 -5.7946 0.4413 19 1 10.7636 -4.3823 -1.2975 20 1 10.3097 -6.7217 -1.7483 21 6 4.1876 -1.9744 -1.2059 22 1 -0.3633 -0.5139 0.8900 23 1 -0.3634 1.0276 0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 1.2664 -2.7503 1.0282 26 1 0.4962 -2.3058 -0.5136 27 1 2.0377 -3.1957 -0.5129 28 1 3.4341 -2.6163 1.6047 29 1 4.4577 -1.2115 2.0152 30 1 5.2855 -3.7623 0.9101 31 1 6.3092 -2.3569 1.3201 32 1 6.0923 -3.4189 -2.5592 33 1 5.4111 -4.4548 -1.2822 34 1 6.6223 -5.5720 -2.7847 35 1 4.2403 -1.3491 -2.0971 36 1 3.5735 -2.8565 -1.3873 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261020918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:59 Heat of formation + Delta-G solvation = -83.272671 kcal Electronic energy + Delta-G solvation = -15825.589260 eV Core-core repulsion = 13307.720558 eV Total energy + Delta-G solvation = -2517.868702 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17358 -39.14549 -36.35921 -35.03382 -31.89120 -30.53703 -29.18394 -27.96144 -26.63895 -24.44205 -21.86131 -20.89565 -19.96614 -18.79910 -18.16906 -17.08239 -16.66161 -16.36339 -15.66217 -15.32970 -14.68164 -14.60617 -14.36653 -13.96850 -13.72231 -13.56832 -13.16089 -13.03823 -12.89469 -12.68127 -12.55717 -12.31694 -12.00663 -11.91292 -11.59591 -11.44970 -11.25523 -10.89043 -10.59213 -10.51431 -9.64239 -8.65023 -6.34503 1.52788 1.58924 1.60834 1.79972 2.03116 2.57914 3.18789 3.56262 3.65192 3.83338 3.90734 4.23050 4.39225 4.41141 4.48299 4.52175 4.54331 4.59004 4.65235 4.75396 4.79598 4.89718 4.93911 5.03791 5.08951 5.16750 5.20745 5.34465 5.42158 5.56556 5.64009 6.05430 6.22406 6.43421 6.62514 7.14153 7.46234 8.75662 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.059706 B = 0.005410 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.848535 B = 5174.238244 C = 5300.515054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.498 3.502 3 O -0.606 6.606 4 N -0.608 5.608 5 C 0.066 3.934 6 C 0.138 3.862 7 H 0.080 0.920 8 C -0.119 4.119 9 C -0.098 4.098 10 C -0.075 4.075 11 H 0.051 0.949 12 C 0.022 3.978 13 C -0.608 4.608 14 H 0.049 0.951 15 C -0.040 4.040 16 N -0.941 5.941 17 Si 1.114 2.886 18 H -0.268 1.268 19 H -0.272 1.272 20 H -0.284 1.284 21 C -0.120 4.120 22 H 0.113 0.887 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.055 0.945 32 H -0.020 1.020 33 H -0.006 1.006 34 H 0.255 0.745 35 H 0.055 0.945 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.964 6.360 7.199 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.289 3.711 3 O -0.489 6.489 4 N -0.339 5.339 5 C -0.076 4.076 6 C 0.034 3.966 7 H 0.099 0.901 8 C -0.157 4.157 9 C -0.136 4.136 10 C -0.094 4.094 11 H 0.070 0.930 12 C -0.015 4.015 13 C -0.646 4.646 14 H 0.067 0.933 15 C -0.237 4.237 16 N -0.578 5.578 17 Si 0.936 3.064 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.210 1.210 21 C -0.158 4.158 22 H 0.132 0.868 23 H 0.107 0.893 24 H 0.130 0.870 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.073 0.927 32 H -0.001 1.001 33 H 0.012 0.988 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.462 5.815 6.994 16.247 hybrid contribution -0.924 0.976 -0.194 1.358 sum -14.386 6.792 6.800 17.301 Atomic orbital electron populations 1.21954 0.87643 1.06041 1.06383 1.21805 0.92654 0.82340 0.74295 1.90675 1.72293 1.33069 1.52822 1.48067 1.05987 1.07611 1.72221 1.22098 0.97686 0.84287 1.03525 1.21778 0.79953 0.99717 0.95143 0.90135 1.22397 0.97394 0.99067 0.96861 1.21916 0.97174 0.99637 0.94882 1.21736 0.94892 0.97077 0.95680 0.93031 1.19158 0.95485 0.93132 0.93677 1.22438 1.02049 1.14761 1.25337 0.93250 1.27342 1.08588 0.93586 0.94149 1.70921 1.15343 1.41096 1.30487 0.82969 0.70593 0.76426 0.76440 1.19315 1.19773 1.20979 1.22830 0.96264 0.99563 0.97153 0.86818 0.89264 0.87019 0.90603 0.87777 0.91316 0.89880 0.91214 0.92744 0.92657 1.00133 0.98756 0.93607 0.92639 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 8.87 71.23 0.63 -1.53 16 2 C 0.50 12.70 7.78 87.65 0.68 13.39 16 3 O -0.61 -21.79 16.45 -3.03 -0.05 -21.84 16 4 N -0.61 -14.80 2.86 -816.59 -2.34 -17.13 16 5 C 0.07 1.06 9.11 127.77 1.16 2.22 16 6 C 0.14 4.21 3.26 46.07 0.15 4.37 16 7 H 0.08 2.83 6.98 -2.39 -0.02 2.81 16 8 C -0.12 -3.42 6.43 31.32 0.20 -3.22 16 9 C -0.10 -3.57 5.87 31.32 0.18 -3.38 16 10 C -0.07 -3.10 2.85 -9.71 -0.03 -3.13 16 11 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 12 C 0.02 1.16 3.67 29.85 0.11 1.27 16 13 C -0.61 -34.69 8.67 25.60 0.22 -34.47 16 14 H 0.05 2.75 7.68 -2.91 -0.02 2.73 16 15 C -0.04 -2.31 5.46 84.66 0.46 -1.85 16 16 N -0.94 -58.65 13.65 21.45 0.29 -58.35 16 17 Si 1.11 50.65 29.90 68.60 2.05 52.70 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 C -0.12 -4.11 5.85 31.89 0.19 -3.93 16 22 H 0.11 0.94 8.11 -2.39 -0.02 0.93 16 23 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 24 H 0.11 0.99 7.40 -2.39 -0.02 0.97 16 25 H 0.08 0.97 7.89 -2.38 -0.02 0.95 16 26 H 0.10 1.01 6.44 -2.38 -0.02 0.99 16 27 H 0.07 1.31 6.12 -2.39 -0.01 1.29 16 28 H 0.08 2.07 6.93 -2.39 -0.02 2.05 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 2.12 7.77 -2.39 -0.02 2.10 16 31 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 32 H -0.02 -1.10 8.01 -2.39 -0.02 -1.12 16 33 H -0.01 -0.31 7.92 -2.39 -0.02 -0.33 16 34 H 0.25 16.03 7.22 -92.70 -0.67 15.36 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.50 6.05 -2.38 -0.01 2.49 16 Total: -1.00 -73.10 287.23 5.06 -68.04 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.14 Total: 6.84 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 3.97 Total: -30.26 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -2.05 Total: -75.49 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.05 Total: -21.84 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.70 kcal Total: -73.10 5.06 -68.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.232 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds