Wall clock time and date at job start Mon Mar 30 2020 03:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21288 * 119.99623 * 2 1 4 4 N 1.34774 * 120.00245 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00085 * 5.15828 * 4 2 1 6 6 C 1.46502 * 119.99865 * 185.15265 * 4 2 1 7 7 H 1.08996 * 110.81607 * 1.88924 * 6 4 2 8 8 C 1.54887 * 110.75804 * 238.54661 * 6 4 2 9 9 C 1.54264 * 104.19509 * 203.74789 * 8 6 4 10 10 C 1.53878 * 106.60041 * 23.60905 * 9 8 6 11 11 H 1.09001 * 110.03132 * 240.66908 * 10 9 8 12 12 C 1.52998 * 110.03045 * 119.28820 * 10 9 8 13 13 C 1.50699 * 109.47228 * 66.45571 * 12 10 9 14 14 H 1.07992 * 120.00080 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99793 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99862 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99830 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46994 * 179.97438 * 17 15 13 19 19 H 1.48492 * 109.47414 * 299.99990 * 17 15 13 20 20 H 1.48506 * 109.46916 * 60.00197 * 17 15 13 21 21 C 1.54261 * 106.59782 * 0.02562 * 10 9 8 22 22 H 1.09005 * 109.46724 * 185.35579 * 1 2 3 23 23 H 1.09000 * 109.47282 * 305.35777 * 1 2 3 24 24 H 1.08995 * 109.47084 * 65.36217 * 1 2 3 25 25 H 1.09004 * 109.47110 * 275.20194 * 5 4 2 26 26 H 1.09002 * 109.47333 * 35.20046 * 5 4 2 27 27 H 1.09000 * 109.47373 * 155.20094 * 5 4 2 28 28 H 1.08995 * 110.48114 * 85.06818 * 8 6 4 29 29 H 1.08993 * 110.59855 * 322.47732 * 8 6 4 30 30 H 1.09002 * 110.02927 * 264.32736 * 9 8 6 31 31 H 1.09003 * 110.03740 * 142.89834 * 9 8 6 32 32 H 1.08999 * 109.46969 * 306.45233 * 12 10 9 33 33 H 1.08998 * 109.47091 * 186.45852 * 12 10 9 34 34 H 0.96999 * 120.00651 * 359.97438 * 16 15 13 35 35 H 1.09002 * 110.48926 * 95.06592 * 21 10 9 36 36 H 1.09002 * 110.49014 * 217.70905 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4530 -2.4332 -0.1152 6 6 3.6416 -1.1697 0.1134 7 1 4.0233 -0.1546 0.2232 8 6 4.2863 -1.8695 -1.1086 9 6 5.6638 -2.3360 -0.5942 10 6 5.5442 -2.4563 0.9352 11 1 6.2499 -1.7812 1.4191 12 6 5.8159 -3.8977 1.3704 13 6 7.2561 -4.2434 1.0924 14 1 7.9120 -3.5087 0.6494 15 6 7.7362 -5.4981 1.4029 16 7 6.9374 -6.3929 1.9420 17 14 9.5213 -5.9268 1.0577 18 1 9.7849 -7.3258 1.4802 19 1 9.7913 -5.7890 -0.3959 20 1 10.4068 -5.0062 1.8153 21 6 4.0980 -2.0593 1.2967 22 1 -0.3633 -1.0232 0.0959 23 1 -0.3634 0.5947 0.8381 24 1 -0.3633 0.4284 -0.9341 25 1 1.1123 -2.7471 0.8716 26 1 0.5928 -2.2997 -0.7711 27 1 2.1123 -3.1951 -0.5311 28 1 4.4050 -1.1658 -1.9324 29 1 3.6866 -2.7242 -1.4216 30 1 6.4270 -1.6019 -0.8524 31 1 5.9155 -3.3046 -1.0264 32 1 5.1662 -4.5736 0.8144 33 1 5.6173 -3.9987 2.4373 34 1 6.0105 -6.1702 2.1216 35 1 3.4673 -2.9450 1.3743 36 1 4.0792 -1.4936 2.2282 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261020920.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:03 Heat of formation + Delta-G solvation = -81.705939 kcal Electronic energy + Delta-G solvation = -15856.887674 eV Core-core repulsion = 13339.086910 eV Total energy + Delta-G solvation = -2517.800764 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17192 -39.17796 -36.38223 -35.03464 -31.88402 -30.49279 -29.19938 -27.94960 -26.67422 -24.47146 -21.98068 -20.64014 -20.04130 -18.76204 -18.23711 -17.15160 -16.60690 -16.43483 -15.66547 -15.40976 -14.59917 -14.42376 -14.25906 -14.17680 -13.79208 -13.69368 -13.06192 -13.03180 -12.83816 -12.61965 -12.55399 -12.33498 -12.03617 -11.93353 -11.58832 -11.51686 -11.15848 -10.90168 -10.59031 -10.50901 -9.64175 -8.64540 -6.33933 1.52956 1.56346 1.60851 1.80000 2.02546 2.58001 3.19211 3.58477 3.64320 3.83807 3.89928 4.23493 4.38157 4.43737 4.46286 4.48894 4.52797 4.61964 4.64191 4.73011 4.79180 4.88302 4.92968 5.02836 5.08473 5.15739 5.19964 5.38691 5.45674 5.54173 5.65111 6.05899 6.22992 6.42650 6.63280 7.12770 7.46466 8.76206 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.059307 B = 0.005520 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.003281 B = 5070.951081 C = 5256.012310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.500 3.500 3 O -0.605 6.605 4 N -0.607 5.607 5 C 0.066 3.934 6 C 0.139 3.861 7 H 0.085 0.915 8 C -0.119 4.119 9 C -0.104 4.104 10 C -0.075 4.075 11 H 0.049 0.951 12 C 0.024 3.976 13 C -0.608 4.608 14 H 0.049 0.951 15 C -0.039 4.039 16 N -0.940 5.940 17 Si 1.114 2.886 18 H -0.284 1.284 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.118 4.118 22 H 0.107 0.893 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.055 0.945 32 H -0.006 1.006 33 H -0.019 1.019 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 8.182 -5.887 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.291 3.709 3 O -0.487 6.487 4 N -0.339 5.339 5 C -0.075 4.075 6 C 0.034 3.966 7 H 0.103 0.897 8 C -0.158 4.158 9 C -0.142 4.142 10 C -0.094 4.094 11 H 0.068 0.932 12 C -0.013 4.013 13 C -0.646 4.646 14 H 0.067 0.933 15 C -0.236 4.236 16 N -0.578 5.578 17 Si 0.935 3.065 18 H -0.210 1.210 19 H -0.194 1.194 20 H -0.198 1.198 21 C -0.156 4.156 22 H 0.125 0.875 23 H 0.119 0.881 24 H 0.126 0.874 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.012 0.988 33 H -0.001 1.001 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.886 7.508 -5.776 15.199 hybrid contribution -0.884 1.010 0.258 1.366 sum -12.770 8.518 -5.519 16.312 Atomic orbital electron populations 1.21993 0.87767 1.06595 1.06104 1.21776 0.92580 0.82341 0.74161 1.90673 1.72166 1.33003 1.52828 1.48048 1.06438 1.07699 1.71681 1.22088 0.97742 0.84456 1.03255 1.21927 0.79948 0.99560 0.95122 0.89712 1.22610 0.95913 1.00180 0.97051 1.21968 0.96715 1.00750 0.94736 1.21525 0.95091 0.96600 0.96165 0.93233 1.19207 0.95700 0.92798 0.93608 1.22449 0.97185 1.00756 1.44236 0.93308 1.27320 1.09546 0.93276 0.93475 1.70918 1.07162 1.37186 1.42555 0.82973 0.70013 0.76075 0.77410 1.20976 1.19389 1.19784 1.22678 0.96262 0.99131 0.97543 0.87455 0.88147 0.87441 0.91280 0.87647 0.90879 0.90943 0.90380 0.92248 0.92633 0.98780 1.00077 0.93570 0.91057 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.89 71.24 0.70 -1.61 16 2 C 0.50 12.86 7.77 87.66 0.68 13.54 16 3 O -0.60 -21.54 16.49 -3.05 -0.05 -21.59 16 4 N -0.61 -15.09 2.89 -815.33 -2.36 -17.45 16 5 C 0.07 1.13 8.31 127.77 1.06 2.19 16 6 C 0.14 4.25 3.29 46.29 0.15 4.40 16 7 H 0.08 2.94 7.02 -2.39 -0.02 2.93 16 8 C -0.12 -3.56 6.36 31.67 0.20 -3.36 16 9 C -0.10 -3.83 6.05 31.32 0.19 -3.64 16 10 C -0.07 -3.09 2.89 -10.07 -0.03 -3.12 16 11 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 12 C 0.02 1.23 3.44 29.85 0.10 1.33 16 13 C -0.61 -34.56 8.40 25.60 0.21 -34.35 16 14 H 0.05 2.72 7.67 -2.91 -0.02 2.69 16 15 C -0.04 -2.27 5.46 84.66 0.46 -1.80 16 16 N -0.94 -58.32 13.65 21.45 0.29 -58.02 16 17 Si 1.11 50.53 29.90 68.60 2.05 52.58 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 C -0.12 -4.03 5.91 31.68 0.19 -3.84 16 22 H 0.11 0.90 5.82 -2.38 -0.01 0.89 16 23 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.11 1.07 6.63 -2.39 -0.02 1.06 16 27 H 0.07 1.41 6.32 -2.39 -0.02 1.39 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.15 6.33 -2.39 -0.02 2.14 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 2.29 7.36 -2.39 -0.02 2.28 16 32 H -0.01 -0.33 8.01 -2.39 -0.02 -0.34 16 33 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 34 H 0.25 15.94 7.22 -92.71 -0.67 15.28 16 35 H 0.07 2.38 6.83 -2.39 -0.02 2.36 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -72.12 286.25 5.01 -67.11 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.14 Total: 7.61 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 3.93 Total: -30.24 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -2.06 Total: -75.47 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -72.12 5.01 -67.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020920.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.595 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds