Wall clock time and date at job start Mon Mar 30 2020 03:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99884 * 2 1 4 4 N 1.34779 * 119.99746 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99741 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47175 * 35.00237 * 5 4 2 7 7 C 1.53006 * 109.46998 * 275.00368 * 5 4 2 8 8 C 1.52997 * 109.47127 * 299.99786 * 7 5 4 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 12 12 C 1.52997 * 109.46975 * 180.02562 * 10 9 8 13 13 C 1.50700 * 109.47531 * 294.99745 * 12 10 9 14 14 H 1.08003 * 119.99126 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00569 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99767 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00102 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47036 * 90.00234 * 17 15 13 19 19 H 1.48501 * 109.47232 * 209.99306 * 17 15 13 20 20 H 1.48497 * 109.47127 * 329.99988 * 17 15 13 21 21 C 1.52997 * 109.47204 * 155.00342 * 5 4 2 22 22 H 1.09006 * 109.47449 * 269.99735 * 1 2 3 23 23 H 1.08993 * 109.47434 * 29.99833 * 1 2 3 24 24 H 1.08997 * 109.47531 * 150.00237 * 1 2 3 25 25 H 0.96997 * 120.00149 * 0.02562 * 4 2 1 26 26 H 1.08998 * 109.46505 * 179.97438 * 7 5 4 27 27 H 1.08996 * 109.46884 * 60.00538 * 7 5 4 28 28 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 31 31 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 32 32 H 1.09004 * 109.47610 * 54.99797 * 12 10 9 33 33 H 1.09001 * 109.47532 * 174.99616 * 12 10 9 34 34 H 0.97005 * 119.99608 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.47045 * 299.99966 * 21 5 4 36 36 H 1.09001 * 109.47375 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0094 -0.3251 0.5887 7 6 4.1553 -1.0424 -1.4374 8 6 3.6450 -2.2245 -2.2638 9 6 4.1552 -3.5315 -1.6535 10 6 3.6457 -3.6563 -0.2163 11 1 2.5558 -3.6563 -0.2158 12 6 4.1565 -4.9630 0.3941 13 6 3.5559 -6.1311 -0.3446 14 1 2.8773 -5.9587 -1.1669 15 6 3.8717 -7.4198 0.0300 16 7 4.6976 -7.6297 1.0318 17 14 3.1266 -8.8678 -0.8853 18 1 4.0102 -9.2452 -2.0177 19 1 2.9889 -10.0207 0.0405 20 1 1.7888 -8.4885 -1.4063 21 6 4.1561 -2.4742 0.6102 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6958 -2.0073 0.0005 26 1 5.2452 -1.0419 -1.4377 27 1 3.7918 -0.1113 -1.8720 28 1 4.0083 -2.1358 -3.2877 29 1 2.5550 -2.2245 -2.2634 30 1 3.7920 -4.3736 -2.2426 31 1 5.2452 -3.5315 -1.6540 32 1 5.2428 -5.0017 0.3132 33 1 3.8686 -5.0104 1.4443 34 1 4.9196 -8.5364 1.2956 35 1 3.7931 -2.5631 1.6341 36 1 5.2461 -2.4744 0.6093 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261037514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:29 Heat of formation + Delta-G solvation = -76.013696 kcal Electronic energy + Delta-G solvation = -15999.441990 eV Core-core repulsion = 13481.888060 eV Total energy + Delta-G solvation = -2517.553929 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94550 -37.84296 -34.04109 -32.83590 -31.17936 -30.50674 -28.44092 -26.70562 -23.27232 -22.05773 -20.95962 -20.27687 -18.55505 -16.84738 -16.31962 -15.49700 -15.32814 -14.79068 -14.40557 -13.83767 -13.58520 -13.22734 -12.70048 -12.59436 -12.23033 -11.88891 -11.82582 -11.70176 -11.60863 -11.13957 -10.77313 -10.69388 -10.44597 -10.21847 -9.90691 -9.73661 -9.58097 -9.16270 -8.89295 -8.75477 -8.36834 -6.01776 -4.03605 2.76412 3.29381 3.36370 3.38446 3.44184 4.43550 4.89228 5.13006 5.15690 5.24817 5.26238 5.34700 5.36810 5.63294 5.72235 5.76096 5.91222 5.96744 6.03122 6.13562 6.19098 6.33673 6.45663 6.57591 6.71249 6.75336 6.99979 7.04937 7.14323 7.64878 7.71184 7.79174 7.98001 8.37445 8.40716 9.02960 9.60317 11.09484 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038107 B = 0.006289 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.590348 B = 4451.063789 C = 4595.412862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.508 3.492 3 O -0.559 6.559 4 N -0.717 5.717 5 C 0.145 3.855 6 H 0.079 0.921 7 C -0.126 4.126 8 C -0.118 4.118 9 C -0.105 4.105 10 C -0.078 4.078 11 H 0.052 0.948 12 C 0.026 3.974 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.123 4.123 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.404 0.596 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.063 0.937 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 10.975 -3.033 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.295 3.705 3 O -0.438 6.438 4 N -0.369 5.369 5 C 0.040 3.960 6 H 0.097 0.903 7 C -0.165 4.165 8 C -0.156 4.156 9 C -0.143 4.143 10 C -0.097 4.097 11 H 0.071 0.929 12 C -0.011 4.011 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.161 4.161 22 H 0.109 0.891 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.240 0.760 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.917 11.574 -2.925 12.911 hybrid contribution -0.584 -1.389 -0.446 1.571 sum -5.501 10.185 -3.370 12.057 Atomic orbital electron populations 1.21885 0.92278 1.04625 1.04587 1.20769 0.90470 0.83746 0.75562 1.90682 1.70904 1.31587 1.50622 1.46309 1.07777 1.08655 1.74178 1.21008 0.79291 0.99089 0.96580 0.90302 1.21874 1.00702 0.98442 0.95460 1.21563 1.00341 0.95459 0.98213 1.21528 1.00254 0.95786 0.96708 1.21173 0.98802 0.95610 0.94087 0.92936 1.19138 0.96470 0.89741 0.95719 1.21235 1.27149 0.90880 1.16106 0.92637 1.25018 0.95292 0.99014 0.95152 1.69966 1.35046 1.20938 1.27555 0.86652 0.79596 0.82434 0.79650 1.20732 1.21306 1.19953 1.21961 1.01367 0.93379 0.99430 0.89051 0.89251 0.90184 0.76016 0.91345 0.92398 0.92913 0.92669 0.91153 0.92686 0.96519 0.96685 0.93058 0.91865 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.30 36.01 0.37 -1.24 16 2 C 0.51 6.96 7.90 -10.98 -0.09 6.87 16 3 O -0.56 -9.87 16.76 5.56 0.09 -9.78 16 4 N -0.72 -9.61 4.23 -53.80 -0.23 -9.84 16 5 C 0.14 2.12 2.78 -67.93 -0.19 1.93 16 6 H 0.08 1.22 7.58 -51.93 -0.39 0.82 16 7 C -0.13 -1.80 5.60 -26.73 -0.15 -1.95 16 8 C -0.12 -1.73 5.77 -26.73 -0.15 -1.88 16 9 C -0.11 -1.84 5.01 -26.73 -0.13 -1.97 16 10 C -0.08 -1.45 1.97 -90.62 -0.18 -1.63 16 11 H 0.05 0.95 6.50 -51.93 -0.34 0.61 16 12 C 0.03 0.64 4.45 -27.88 -0.12 0.51 16 13 C -0.52 -13.80 8.41 -34.44 -0.29 -14.09 16 14 H 0.06 1.44 7.06 -52.48 -0.37 1.07 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 17 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.12 -1.98 4.89 -26.73 -0.13 -2.11 16 22 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.40 5.00 6.87 -40.82 -0.28 4.71 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.79 7.60 -51.93 -0.39 0.39 16 30 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 288.11 15.07 4.34 4.34 Total: -1.00 -30.84 288.11 -7.16 -38.01 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.92 Total: 0.86 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.16 Total: -14.10 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.51 Total: -35.44 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.84 -7.16 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.008 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds