Wall clock time and date at job start Mon Mar 30 2020 03:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99884 * 2 1 4 4 N 1.34779 * 119.99746 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99741 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47175 * 35.00237 * 5 4 2 7 7 C 1.53006 * 109.46998 * 275.00368 * 5 4 2 8 8 C 1.52997 * 109.47127 * 299.99786 * 7 5 4 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 12 12 C 1.52997 * 109.46975 * 180.02562 * 10 9 8 13 13 C 1.50700 * 109.47531 * 294.99745 * 12 10 9 14 14 H 1.08003 * 119.99126 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00569 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99767 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00102 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47036 * 90.00234 * 17 15 13 19 19 H 1.48501 * 109.47232 * 209.99306 * 17 15 13 20 20 H 1.48497 * 109.47127 * 329.99988 * 17 15 13 21 21 C 1.52997 * 109.47204 * 155.00342 * 5 4 2 22 22 H 1.09006 * 109.47449 * 269.99735 * 1 2 3 23 23 H 1.08993 * 109.47434 * 29.99833 * 1 2 3 24 24 H 1.08997 * 109.47531 * 150.00237 * 1 2 3 25 25 H 0.96997 * 120.00149 * 0.02562 * 4 2 1 26 26 H 1.08998 * 109.46505 * 179.97438 * 7 5 4 27 27 H 1.08996 * 109.46884 * 60.00538 * 7 5 4 28 28 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 31 31 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 32 32 H 1.09004 * 109.47610 * 54.99797 * 12 10 9 33 33 H 1.09001 * 109.47532 * 174.99616 * 12 10 9 34 34 H 0.97005 * 119.99608 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.47045 * 299.99966 * 21 5 4 36 36 H 1.09001 * 109.47375 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0094 -0.3251 0.5887 7 6 4.1553 -1.0424 -1.4374 8 6 3.6450 -2.2245 -2.2638 9 6 4.1552 -3.5315 -1.6535 10 6 3.6457 -3.6563 -0.2163 11 1 2.5558 -3.6563 -0.2158 12 6 4.1565 -4.9630 0.3941 13 6 3.5559 -6.1311 -0.3446 14 1 2.8773 -5.9587 -1.1669 15 6 3.8717 -7.4198 0.0300 16 7 4.6976 -7.6297 1.0318 17 14 3.1266 -8.8678 -0.8853 18 1 4.0102 -9.2452 -2.0177 19 1 2.9889 -10.0207 0.0405 20 1 1.7888 -8.4885 -1.4063 21 6 4.1561 -2.4742 0.6102 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6958 -2.0073 0.0005 26 1 5.2452 -1.0419 -1.4377 27 1 3.7918 -0.1113 -1.8720 28 1 4.0083 -2.1358 -3.2877 29 1 2.5550 -2.2245 -2.2634 30 1 3.7920 -4.3736 -2.2426 31 1 5.2452 -3.5315 -1.6540 32 1 5.2428 -5.0017 0.3132 33 1 3.8686 -5.0104 1.4443 34 1 4.9196 -8.5364 1.2956 35 1 3.7931 -2.5631 1.6341 36 1 5.2461 -2.4744 0.6093 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261037514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:29 Heat of formation + Delta-G solvation = -94.995133 kcal Electronic energy + Delta-G solvation = -16000.265087 eV Core-core repulsion = 13481.888060 eV Total energy + Delta-G solvation = -2518.377026 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.13536 -39.14571 -35.66335 -34.41649 -32.79508 -31.60365 -29.53028 -28.47222 -25.09428 -23.35754 -22.13759 -21.74820 -19.87204 -18.47671 -17.81199 -16.74219 -16.60609 -16.36123 -15.93239 -15.11588 -14.81329 -14.58570 -14.34338 -13.62913 -13.57904 -13.45008 -13.12922 -12.92628 -12.85452 -12.82155 -12.47455 -12.43864 -11.98980 -11.78900 -11.51142 -11.15670 -10.89579 -10.85295 -10.58797 -10.49119 -9.95424 -8.14662 -6.23406 1.42493 1.42672 1.53225 1.71669 2.40164 2.43990 3.19374 3.81378 3.91061 3.96228 4.05479 4.31748 4.38480 4.54109 4.62398 4.66669 4.69188 4.71570 4.75863 4.91546 5.06906 5.14101 5.18797 5.20969 5.30063 5.44752 5.49614 5.54339 5.63111 5.64797 5.86287 5.93272 6.32323 6.66199 6.93777 7.32412 7.45193 8.97158 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038107 B = 0.006289 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.590348 B = 4451.063789 C = 4595.412862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.504 3.496 3 O -0.602 6.602 4 N -0.713 5.713 5 C 0.151 3.849 6 H 0.073 0.927 7 C -0.121 4.121 8 C -0.107 4.107 9 C -0.101 4.101 10 C -0.067 4.067 11 H 0.062 0.938 12 C 0.030 3.970 13 C -0.525 4.525 14 H 0.064 0.936 15 C -0.003 4.003 16 N -0.937 5.937 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.261 1.261 21 C -0.114 4.114 22 H 0.108 0.892 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.410 0.590 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.046 0.954 32 H -0.013 1.013 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 11.332 -4.268 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.293 3.707 3 O -0.484 6.484 4 N -0.366 5.366 5 C 0.046 3.954 6 H 0.091 0.909 7 C -0.160 4.160 8 C -0.144 4.144 9 C -0.138 4.138 10 C -0.086 4.086 11 H 0.081 0.919 12 C -0.007 4.007 13 C -0.563 4.563 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.578 5.578 17 Si 0.782 3.218 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.185 1.185 21 C -0.152 4.152 22 H 0.126 0.874 23 H 0.114 0.886 24 H 0.120 0.880 25 H 0.248 0.752 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.583 11.925 -4.171 14.246 hybrid contribution -0.041 -1.499 -0.022 1.499 sum -6.624 10.426 -4.193 13.045 Atomic orbital electron populations 1.21907 0.88542 1.06040 1.06078 1.21551 0.92211 0.82801 0.74151 1.90666 1.72158 1.32993 1.52622 1.46300 1.07202 1.09186 1.73888 1.20837 0.80318 0.97542 0.96721 0.90926 1.21830 1.01124 0.98168 0.94856 1.21457 1.00759 0.93503 0.98719 1.21437 0.99731 0.96985 0.95684 1.20991 0.99221 0.93526 0.94861 0.91938 1.19046 0.94628 0.92543 0.94465 1.21668 1.26803 0.91710 1.16092 0.91763 1.25925 0.95815 1.02210 0.96027 1.70107 1.36739 1.21539 1.29380 0.85563 0.79269 0.78663 0.78256 1.20217 1.21309 1.18479 1.21824 1.01240 0.93198 0.98966 0.87397 0.88609 0.88004 0.75237 0.90778 0.92392 0.91415 0.91828 0.92836 0.93533 0.99418 0.99356 0.93100 0.92116 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.30 71.24 0.73 -1.84 16 2 C 0.50 12.79 7.90 87.66 0.69 13.48 16 3 O -0.60 -20.57 16.76 -3.03 -0.05 -20.62 16 4 N -0.71 -17.72 4.23 -442.53 -1.87 -19.59 16 5 C 0.15 4.21 2.78 44.99 0.13 4.34 16 6 H 0.07 2.18 7.58 -2.39 -0.02 2.16 16 7 C -0.12 -3.23 5.60 30.60 0.17 -3.06 16 8 C -0.11 -2.87 5.77 30.59 0.18 -2.70 16 9 C -0.10 -3.42 5.01 30.59 0.15 -3.27 16 10 C -0.07 -2.47 1.97 -10.80 -0.02 -2.49 16 11 H 0.06 2.16 6.50 -2.39 -0.02 2.15 16 12 C 0.03 1.50 4.45 29.85 0.13 1.63 16 13 C -0.52 -28.17 8.41 25.60 0.22 -27.95 16 14 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 15 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 16 N -0.94 -56.16 13.29 21.45 0.28 -55.88 16 17 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 C -0.11 -3.61 4.89 30.59 0.15 -3.46 16 22 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.41 9.15 6.87 -92.71 -0.64 8.51 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.62 7.60 -2.39 -0.02 1.60 16 30 H 0.05 1.99 6.95 -2.39 -0.02 1.98 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -66.70 288.11 3.79 -62.91 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.41 Total: 13.01 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 2.99 Total: -25.00 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.59 Total: -75.47 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.62 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -66.70 3.79 -62.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.086 kcal (2) G-P(sol) polarization free energy of solvation -66.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds